BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52230.1
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474340 jgi|Araly1|474340|fgenesh2_kg.1__4294__AT1G52230.1 922 0.0
> Ahg474340 jgi|Araly1|474340|fgenesh2_kg.1__4294__AT1G52230.1
Length=640
Score = 922 bits (499), Expect = 0.0
Identities = 583/620 (94%), Gaps = 19/620 (3%)
Strand=Plus/Plus
Query 1 ACAAATTACATCAATCCACTCACTTACTTTGGcaacaaacaaacaacaacaaAGAGAGAA 60
|||||||||||||||||||||||||||||||| | ||| | ||||||||||||||
Sbjct 1 ACAAATTACATCAATCCACTCACTTACTTTGG---C-AAC--A-AACAACAAAGAGAG-- 51
Query 61 ATTAACATGGCGTCTTTTGCAACCATCGCCGCCGTACAACCTTCTGCCGCCGTGAAAGGA 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 A--AACATGGCGTCTTTTGCAACCATCGCCGCCGTACAACCTTCTGCCGCCGTGAAAGGA 109
Query 121 CTTGGAGGTAGCTCTCTTGCCGGAGCTAAGCTCTTCATCAAACCTTCTCGCCAAAGCTTC 180
|| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 110 CTCGGAGGTAGCTCTCTCGCCGGAGCTAAGCTCTTTATCAAGCCTTCTCGCCAAAGCTTC 169
Query 181 AAAACCAAATCCACCAGAGCTGGTGCTGTGGTGGCTAAGTATGGAGACAAAAGTGTATAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 170 AAAACCAAATCCACCAGAGCTGGTGCTGTGGTGGCTAAGTATGGAGACAAAAGTGTCTAC 229
Query 241 TTTGATTTAGAAGATTTGGGTAACACAACAGGACAATGGGATGTGTATGGATCTGATGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TTTGATTTAGAAGATTTGGGTAACACAACAGGACAATGGGATGTGTATGGATCTGATGCT 289
Query 301 CCTTCTCCTTATAACCCACTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CCTTCTCCTTATAACCCACTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACA 349
Query 361 AAGAGAGGTTTGCTTCTCAAATTTTTGATTCTTGGAGGAGGCTCTTTGCTTACATATGTT 420
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 350 AAGAGAGGTTTGCTTCTCAAGTTTTTGATTCTTGGAGGAGGTTCTTTGCTTACTTATGTC 409
Query 421 AGTGCGAACTCTACCGGCGATGTTCTTCCGATTAAGAGAGGTCCTCAAGAGCCACCTAAG 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AGCGCGAACTCTACCGGCGATGTTCTTCCGATTAAGAGAGGTCCTCAAGAGCCACCTAAG 469
Query 481 CTCGGTCCTCGCGGCAAGCTTTAAATTAGCTTTCTAAAATCTTTCAAAAAGTCAG-AAAC 539
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||
Sbjct 470 CTCGGTCCTCGCGGCAAGCTTTAAATTAGCTTTCTAAA-TCTTTGAAAAAGTCTGGAAAC 528
Query 540 TTTCTCCCCAATTCTATGAACCCTATTTA-TG-TATAT-TGTACTGT-GT-T-GTGTTAA 593
||||| ||||||||| |||||||| |||| || | ||| | || ||| || | |||||||
Sbjct 529 TTTCTTCCCAATTCTGTGAACCCTTTTTAGTGATTTATGTATATTGTTGTGTTGTGTTAA 588
Query 594 TTGCTTTGTAAGCTAGTGAT 613
||||||||||||||||||||
Sbjct 589 TTGCTTTGTAAGCTAGTGAT 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24360543963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5