BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52342.1
Length=515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474355 jgi|Araly1|474355|fgenesh2_kg.1__4309__AT1G52342.1 496 9e-140
Ahg481219 jgi|Araly1|481219|fgenesh2_kg.4__279__AT1G52342.1 372 2e-102
Ahg936995 jgi|Araly1|936995|scaffold_501186.1 230 1e-59
> Ahg474355 jgi|Araly1|474355|fgenesh2_kg.1__4309__AT1G52342.1
Length=439
Score = 496 bits (268), Expect = 9e-140
Identities = 381/430 (89%), Gaps = 30/430 (7%)
Strand=Plus/Plus
Query 9 AAAATCTTAAATAAGAAGAATCTTTTAAATTTTTGTGTTGAGTGTGAAACaaaaaaaTAT 68
||||||||||||||||| ||||||| ||| ||||||| ||||||||||| |||||| ||
Sbjct 1 AAAATCTTAAATAAGAACAATCTTTAAAAAATTTGTGTGGAGTGTGAAACCAAAAAA-AT 59
Query 69 GTGTTACAAAATTCTTCTACCTCTTGTTATTCCTCCGGAGAGCTTCCACGAAAATACTCC 128
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 GTGTTACAAAATTCTTCCACCTCTTGTTATTCCTCCGGAGAGCTTCCACGAAAATACGAC 119
Query 129 GGTGGCAGAAGTGACGGTGGCAACAGATGTGGAAGCCACCGCTGGTCACCGTAGCGGTGG 188
||||||||||||||||| || ||||| |||||||||||||| |||||| ||||||||||
Sbjct 120 GGTGGCAGAAGTGACGGCCGCGACAGAGGTGGAAGCCACCGCGGGTCACGGTAGCGGTGG 179
Query 189 TGACGGTGGCGGTGGAAAGAAGAAGTGTGTGTGTTCACCGTCGAAGCATCCAAGATCGTT 248
|| | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TG--G-TGG------AAAGAAGAAGTGTGTGTGTTCACCGTCGAAGCATCCAAGATCGTT 230
Query 249 CAAGTGTAGGTATCATCAACATGAATATCAATGGcttccttcttcttcttcttcttcttc 308
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 231 CAAGTGTAGGTATCATCAACATGAATATCAATGGCTTCCTTCATCTTCATCTTC------ 284
Query 309 ttcttcATCCCTCCACAAATAACACATATCATCAATTCATCATGTAAACAATAATTATA- 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ------ATCCCTCCACAAATAACACATATCATCAATTCATCATGTAAACAATAATTATAG 338
Query 368 TTTT-T------ATTATTCATGGTTATTTTGATTCGTTAAGTATTTCAATCAAAGTAGAA 420
|||| | |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 339 TTTTATGTTTTTATTATTCATGGTTATTTTGATTTGCTAAGTATTTCAATCAAAGTAGAA 398
Query 421 ATTGTGTTGT 430
||||||||||
Sbjct 399 ATTGTGTTGT 408
> Ahg481219 jgi|Araly1|481219|fgenesh2_kg.4__279__AT1G52342.1
Length=252
Score = 372 bits (201), Expect = 2e-102
Identities = 222/232 (96%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 72 TTACAAAATTCTTCTACCTCTTGTTATTCCTCCGGAGAGCTTCCACGAAAATACTCCGGT 131
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 6 TTACAAAATTCTTCTACCTCTTGTTATCCCTCCGGAGAGCTTCCACGAAATTACCCCGGT 65
Query 132 GGCAGAAGTGACGGTGGCAACAGATGTGGAAGCCACCGCTGGTCACCGTAGCGGTGGTGA 191
|||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 66 GGCAGAAGTGACGGTGGCAACAGAGGTGGAAGCCACCGCGGGTCACGGTAGCGGTGGTGA 125
Query 192 CGGTGGCGGTGGAAAGAAGAAGTGTGTGTGTTCACCGTCGAAGCATCCAAGATCGTTCAA 251
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CGGTGGCGATGGAAAGAAGAAGTGTGTGTGTTCACCGTCGAAGCATCCAAGATCGTTCAA 185
Query 252 GTGTAGGTATCATCAACATGAATATCAA-TGGcttccttcttcttcttcttc 302
||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 186 GTGTAGGTATCATCAACATGAATAT-AAGTGGCTTCCTTCATCTTCTTCTTC 236
> Ahg936995 jgi|Araly1|936995|scaffold_501186.1
Length=237
Score = 230 bits (124), Expect = 1e-59
Identities = 132/136 (97%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 109 AGCTTCCACGAAAATACTCCGGTGGCAGAAGTGACGGTGGCAACAGATGTGGAAGCCACC 168
||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 65 AGCTTCCACGAAATTACCCCGGTGGCAGAAATGACGGTGGCAACAGATGTGGAAGCCACC 124
Query 169 GCTGGTCACCGTAGCGGTGGTGACGGTGGCGGTGGAAAGAAGAAGTGTGTGTGTTCACCG 228
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 125 GCTGGTCACCGTAGCGGTGGTGACGGTGGCGATGGAAAGAAGAAGTGTGTGTGTTCACCG 184
Query 229 TCGAAGCATCCAAGAT 244
||||||||||||||||
Sbjct 185 TCGAAGCATCCAAGAT 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18734394199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5