BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52510.1 Length=1470 Score E Sequences producing significant alignments: (Bits) Value Ahg474375 jgi|Araly1|474375|fgenesh2_kg.1__4329__AT1G52510.1 2281 0.0 > Ahg474375 jgi|Araly1|474375|fgenesh2_kg.1__4329__AT1G52510.1 Length=1471 Score = 2281 bits (1235), Expect = 0.0 Identities = 1396/1473 (95%), Gaps = 13/1473 (1%) Strand=Plus/Plus Query 9 AAAAATGTCTTTGCTCTCTCCTCTTCCTCTGCTCCACTCATTCTCCTCCACCGTCGCCAC 68 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAATGTCTCTGCTCTCTCCTCTTCCTCTGCTCCACTCATTCTCCTCCACCGTCGCCAC 60 Query 69 AAAATCCACCGCCTCTAGAATCACTGCCACGCCGTCGAAAATCCGCTTCTCTGTCATAAA 128 |||||||||||||||||||||||||||| | ||||||||| |||||||||| ||| | || Sbjct 61 AAAATCCACCGCCTCTAGAATCACTGCCTCTCCGTCGAAACTCCGCTTCTCCGTCGTCAA 120 Query 129 CGCCACGTCGGAGAATGGAAACAGCGGTGGTAGTAAAAACGATCGTGATGAGGATCCATC 188 ||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| || Sbjct 121 CGCGACGCCGGAGAATGGAAACAGCGGTGGTCGTAAAAAAGATCGTGATGAGGATCCTTC 180 Query 189 TTTTAACCCATTTGGTTTCGTTACAGACAACCCGTCTAGCCGGAGTGCAATTCAGTTACC 248 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 181 TTTTAACCCATTTGGTTTCGTTACAGATAATCCGTCTAGCCGGAGTGCAATTCAGTTACC 240 Query 249 AGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACAGGACTGAAGATAAAGG 308 ||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 241 GGAGTCTCCGGCTGAAGACGGTAACGTCGGTCAAATGCTCTACAGGACTGAAGATAAAGG 300 Query 309 TAAAGAGTATGGCTCAACTATCAAATCTGGGAAGCTTAGATGGTTTGTGAGAGAGACTGG 368 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TAAAGAGTATGGTTCAACTATCAAATCTGGGAAGCTTAGATGGTTTGTGAGAGAGACTGG 360 Query 369 ATCAAAGGAGAGTCGTCGAGGAACCATTGTATTTGTTCATGGAGCTCCTACTCAGTCTTT 428 |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 361 GTCAAAGGAGAGTCGGCGAGGAACCATTGTTTTTGTTCATGGAGCTCCTACTCAGTCTTT 420 Query 429 TAGCTACAGAACTGTCATGTCTGAGTTGTCAGATGCTGGATTTCATTGCTTTGCACCTGA 488 ||| ||| | || || ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 421 TAGTTACCGGACCGTTATGTCTGAGATGTCAGATGCTGGATTTCATTGCTTTGCACCTGA 480 Query 489 CTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGA 548 ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 481 CTGGATAGGTTTCGGATTCAGTGACAAGCCGCAGCCGGGATACGGTTTTAATTACACAGA 540 Query 549 AAAAGAGTACCATGAGGCGTTTGATAAACTGCTTGAAGTGCTAGAGGTCAAATCTCCTTT 608 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 541 AAAAGAGTACCATGAGGCATTTGATAAACTGCTGGAAGTGCTAGAGGTCAAATCTCCTTT 600 Query 609 CTTTCTTGTTGTTCAGGGATTTCTTGTAGGTTCATATGGTTTAACTTGGGCTTTGAAAAA 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTTTCTTGTTGTTCAGGGATTTCTTGTAGGTTCATATGGTTTAACTTGGGCTTTGAAAAA 660 Query 669 TCCAAGCAAGGTTGAGAAACTCGCGATCCTTAATAGTCCGCTGACCGTTTCATCCCCAGT 728 ||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 661 TCCAAGCAAAGTTGAGAAAATCGCGATCCTTAATAGTCCACTGACCGTTTCATCCCCAGT 720 Query 729 TCCCGGATTATTTAAGCAGCTGAGGATTCCCCTGTTTGGTGAATTCACCTGCCAAAATGC 788 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TCCCGGATTATTTAAGCAACTGAGGATTCCCCTGTTTGGTGAATTCACCTGCCAAAATGC 780 Query 789 TATCTTGGCCGAGCGGTTCATTGAAGGAGGTAGCCCCTACGTCCTGAAGAATGAGAAAGC 848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TATCTTGGCCGAGCGGTTCATTGAAGGAGGTAGCCCCTACGTCCTGAAGAATGAGAAAGC 840 Query 849 TGATGTGTATCGTCTACCATATTTGTCAAGCGGAGGGCCTGGCTTTGCCTTGCTCGAGAC 908 |||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct 841 TGATGTCTATCGTCTACCTTATTTGTCAAGCGGAGGACCTGGGTTTGCCTTGCTCGAGAC 900 Query 909 TGCGAAGAAGATCAACTTTGGAGACACATTGAGTCAAATTGCAAATGGGTTTTCATCAGG 968 |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 901 TGCGAAAAAGATCAACTTTGGAGACACCTTGAGTCAAATTGCAAATGGGTTTTCATCGGG 960 Query 969 CAGCTGGGATAAACCTACGCTTCTGGCTTGGGGAATAGCTGATAAATATCTGCCTCAGTC 1028 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CAACTGGGATAAACCTACGCTTCTGGCTTGGGGAATAGCTGATAAATATCTGCCTCAGTC 1020 Query 1029 TATAGCAGAGGAATTTGAGAAACAGAACCCCCAAAATGTTAAGCTTCGACTCATCGAAGG 1088 |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1021 TATAGCAGAGGAGTTTGAGAAACAGAATCCCCAAAATGTCAAGCTTCGACTCATCGAAGG 1080 Query 1089 TGCTGGGCATTTGCCTCAAGAAGACTGGCCAGAGAAAGTAGTTGCTGCCCTCCGAGCATT 1148 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1081 TGCTGGGCATTTGCCTCAAGAAGACTGGCCGGAGAAAGTAGTTGCAGCCCTCCGAGCATT 1140 Query 1149 TTTCTGACTTCCAAATACAACAAAAAAGGACAGAGGTACTGTTTTGGTGGGGTGTTT-A- 1206 |||||||||||||||| || |||| ||||||| ||||| |||||||||||| | ||| | Sbjct 1141 TTTCTGACTTCCAAATTCACCAAACAAGGACAAAGGTAATGTTTTGGTGGGTT-TTTCAA 1199 Query 1207 GAGTCTTACCTCTTTGATGGATGTGTGCAAAGCTTCACATTGCTCTTTGGAGAGGCTAGA 1266 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1200 GAATCTTACCTCTTTGATGGATGTGTGCAAAGCTTCACATTGCTCTTTGGAAAGGCTAGA 1259 Query 1267 AGCAGTCTGCAACGGGTGGATTCTGGCCTGCGaaaaa-aaTAAACTAG-A-A-TTAATCG 1322 ||||| ||||||||||||||||||||||||||||||| || ||||||| | | ||||||| Sbjct 1260 AGCAGACTGCAACGGGTGGATTCTGGCCTGCGAAAAACAA-AAACTAGTAGAATTAATCG 1318 Query 1323 TACAGCATGTAAACCCGTTTCTTCTGTCGTCAAATGTACAGA----AAA-CAAAAGTGGA 1377 ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| Sbjct 1319 TACAGCATGTAAACCAGTTTCTTCTGTCGTCAAATGTACAGAGTTGAAAACAAAAGTGGA 1378 Query 1378 TACTTTGTGAATCAAATGAGTGGTTACATAGATGCTTTACTTCATTTCAAATGTAAATGT 1437 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1379 TACTTTGTGAATCAAATGAGTGGTTACATAGATGCTTTACTTCATTTCAAGTGTAAGTGT 1438 Query 1438 GTAAAGATCACTTACTTGGTACAGCACTTCATC 1470 |||||| |||||||||||||||||||||||||| Sbjct 1439 GTAAAGCTCACTTACTTGGTACAGCACTTCATC 1471 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55002313780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5