BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52540.1
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337406 jgi|Araly1|337406|fgenesh1_pg.C_scaffold_1003971 1712 0.0
> Ahg337406 jgi|Araly1|337406|fgenesh1_pg.C_scaffold_1003971
Length=1053
Score = 1712 bits (927), Expect = 0.0
Identities = 1007/1047 (96%), Gaps = 0/1047 (0%)
Strand=Plus/Plus
Query 321 ATGCAAATTTTTAGTTGTTTCTGCTGTGGAAAAGGATTTGATCGGCAAAAGAAGGTGAAA 380
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAAATTTTTAGTTGCTTCTGCTGTGGAAAAGGATTTGATCGGCAAAAGAAGGTGAAA 60
Query 381 ACGGAGCCATCGTGGAGGATCTTTTCACTCAAGGAACTTCACGCAGCAACAAACAGTTTT 440
||||||||||| |||||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct 61 ACGGAGCCATCATGGAGGATTTTTTCACTGAAAGAACTTCACGCAGCCACAAACAGTTTT 120
Query 441 AATTACGATAACAAGCTCGGTGAAGGCAGATTTGGCAGTGTGTATTGGGGTCAGCTATGG 500
|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 121 AATTACGACAACAAGCTCGGTGAAGGCCGATTTGGAAGTGTGTATTGGGGTCAGCTATGG 180
Query 501 GATGGATCTCAAATTGCAGTCAAGAGATTGAAGGCATGGAGTAGCAGAGAAGAGATAGAT 560
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 181 GATGGATCTCAAATTGCAGTCAAGAGACTGAAGGCTTGGAGTAGCAGAGAAGATATAGAT 240
Query 561 TTTGCTGTAGAAGTCGAGATTCTTGCTCGTATCCGTCACAAGAATCTATTGAGTGTACGA 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 TTTGCTGTAGAAGTCGAGATTCTTGCTCGTATCCGTCACAAGAATCTATTGAGTGTTCGA 300
Query 621 GGTTACTGTGCAGAAGGACAAGAACGACTCATTGTATATGATTACATGCCAAATTTGAGC 680
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 GGTTACTGTGCGGAAGGACAAGAACGACTCATTGTATATGACTACATGCCAAATTTGAGC 360
Query 681 TTGGTCTCTCATCTTCATGGTCAACATTCATCTGAGTCGCTTCTTGATTGGACTAGGCGG 740
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 361 TTGGTCTCTCATCTTCATGGTCAGCATTCATCTGAGTCGCTTCTTGATTGGACCAGGCGG 420
Query 741 ATGAATATTGCTGTATCTTCTGCTCAGGCGATTGCCTACTTGCATCATTTTGCAACACCT 800
||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 ATGAATATTGCTGTAACCTCTGCTCAGGCGATTGCCTACTTACATCATTTTGCAACACCC 480
Query 801 AGAATAGTCCATGGAGATGTGAGAGCAAGCAATGTGCTGCTAGATTCTGAGTTTGAAGCT 860
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 481 CGAATAGTCCATGGAGATGTGAGAGCAAGCAATGTGCTCCTTGATTCTGAGTTTGAAGCT 540
Query 861 CGGGTTACAGATTTCGGATACGATAAGCTGATGCCAGATGATGGAGCTAACAAAAGCACC 920
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 CGGGTTACAGATTTCGGATACGATAAGCTGATGCCAGATGATGGAGCTAACAAAAGTACC 600
Query 921 AAGGGTAATAACATTGGGTATCTCTCACCAGAATGTATCGAATCTGGAAAAGAATCAGAC 980
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGGGTAATAACAATGGGTATCTCTCACCAGAATGTATCGAATCTGGAAAAGAATCAGAC 660
Query 981 ATGGGAGATGTGTATAGTTTCGGTGTTCTTTTGCTGGAGCTTGTAACTGGTAAGAGACCT 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGGGAGATGTGTATAGTTTCGGTGTTCTTTTGCTGGAGCTTGTAACTGGTAAGAGACCT 720
Query 1041 ACAGAGAGGGTAAACTTAACAACAAAGAGGGGTATTACCGAATGGGTTTTACCTCTTGTT 1100
|| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 ACTGAAAGGGTAAACTTAACAACAAAGCGGGGTATTACCGAATGGGTTTTACCTCTTGTA 780
Query 1101 TACGAAAGAAAGTTTGGTGAAATTGTGGATCAAAGGCTGAATGGGAAGTATGTGGAAGAA 1160
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 781 TACGAAAGAAAGTTTGGTGAAATTGTCGATCAAAGGCTGAATGGGAAGTATGTGGAAGAG 840
Query 1161 GAGCTGAAAAGGATAGTTTTGGTTGGTCTCATGTGTGCTCAGAGGGAGTCAGAGAAGAGA 1220
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 GAGCTGAAAAGGGTAGTTTTGGTTGGTCTCATGTGTGCTCAGAGGGAGCCAGAGAAGAGA 900
Query 1221 CCAACAATGTCTGAAGTTGTGGAGATGCTAATGATTGAATCAAAGGAGAAAATGGCTCAG 1280
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 901 CCAACAATGTCTGAAGTTGTGGAGATGCTAATGAATGAATCAAAGGAGAAAATGGCTCAG 960
Query 1281 CTTGAAGCTAATCCACTCTTCAATGGAAACAATGATGGTGAAGTTATAGATGAAAGCTCA 1340
||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct 961 CTTGAAGCTAATCCACTCTTCAATGAAAACAATGAAGGGGAAGTTATAGATGAAAGCTCA 1020
Query 1341 GAGATCATTTCTGAAGTGAGAGATCAT 1367
||||||||||| |||| ||||||||||
Sbjct 1021 GAGATCATTTCAGAAGAGAGAGATCAT 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60449218815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5