BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52600.1 Length=877 Score E Sequences producing significant alignments: (Bits) Value Ahg474386 jgi|Araly1|474386|fgenesh2_kg.1__4340__AT1G52600.1 1110 0.0 Ahg479026 jgi|Araly1|479026|fgenesh2_kg.3__1727__AT3G15710.1 510 6e-144 > Ahg474386 jgi|Araly1|474386|fgenesh2_kg.1__4340__AT1G52600.1 Length=727 Score = 1110 bits (601), Expect = 0.0 Identities = 657/683 (96%), Gaps = 7/683 (1%) Strand=Plus/Plus Query 1 GTGCCTTAAAGCTGACTCTGAGAGAAACTCTTCTTCTTCACTGCAAACGCTTTTGAGACA 60 |||||||||||||||| |||||||||| | ||||||||||||| ||||||||||| ||| Sbjct 1 GTGCCTTAAAGCTGACCCTGAGAGAAA--C-TCTTCTTCACTGC-AACGCTTTTGAAACA 56 Query 61 AAGTTCGTCACTTCGATCTGAATTATAACACTTCGTGCGAGAATC-GAAATAATCGAAGG 119 |||||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||| Sbjct 57 AAGTTCGTCACTTCGATCTGAATTATAATACTTCG-GCGAGAATCTG-AATAATCGAAGG 114 Query 120 TTCAAGATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTCAGATTCGTCAG 179 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 115 TTCAAGATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTCAGATCCGTCAG 174 Query 180 CTTTTCACTCAGGCCATCAGTCTAGGGATGATTGTCACATCTGCTTTGATCATATGGAAA 239 ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 175 CTTTTCACTCAAGCGATCAGTCTAGGGATGATTGTTACATCTGCTTTGATCATATGGAAA 234 Query 240 GCTTTGATGTGTGTCACTGGAAGCGAATCTCCGGTGGTGGTTGTTCTCTCTGGAAGCATG 299 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 235 GCTTTGATGTGTGTCACTGGAAGTGAATCTCCGGTGGTGGTTGTTCTTTCTGGAAGCATG 294 Query 300 GAACCCGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAAGACCCGATTCGA 359 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 295 GAACCTGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAGGACCCTATTCGA 354 Query 360 GCAGGTGAAATTGTTGTTTTCAATGTTGATGGTCGTGATATTCCCATTGTCCATCGTGTC 419 ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 355 GCAGGCGAAATTGTTGTTTTTAATGTTGATGGTCGTGATATTCCCATCGTCCATCGTGTC 414 Query 420 ATTAAGGTTCACGAAAGGGAAAATACAGGAGAAGTTGATGTTCTAACGAAAGGTGACAAT 479 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 415 ATTAAGGTTCACGAAAGGGAAAATACAGGAGAAGTTGATGTTTTAACAAAAGGTGACAAT 474 Query 480 AACTATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCAT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 AACTATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCAT 534 Query 540 ATAATGGGTCGTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACA 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 ATAATGGGTCGTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACA 594 Query 600 GAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACGTCA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 595 GAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACCTCC 654 Query 660 AAGGATTGAGTCTTTTGGAAAGG 682 ||||||||||||||||||||||| Sbjct 655 AAGGATTGAGTCTTTTGGAAAGG 677 > Ahg479026 jgi|Araly1|479026|fgenesh2_kg.3__1727__AT3G15710.1 Length=817 Score = 510 bits (276), Expect = 6e-144 Identities = 456/543 (84%), Gaps = 11/543 (2%) Strand=Plus/Plus Query 126 ATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTC-AGATTCGTCAGCTTTT 184 ||||||| || ||||||||||||||||| || ||||||| || |||| ||||||||| | Sbjct 109 ATGGGTTTCATTGGAGAAACTGTAGATTCCATTAAATCTA-TCAAGATCCGTCAGCTTCT 167 Query 185 CACTCAGGCCATCAGTCTAGGGATGATTGTCACATCTGCTTTGATCATATGGAAAGCTTT 244 ||||||||| |||| ||| || ||||| || |||||||| ||||| || ||||| || || Sbjct 168 CACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCATT 227 Query 245 GATGTGTGTCACTGGAAGCGAATCTCCGGTGGTGGTTGTTCTCTCTGGAAGCATGGAACC 304 ||| ||||||||||| || ||||| || ||||| ||||||||||| | |||||||||||| Sbjct 228 GATATGTGTCACTGGCAGTGAATCACCTGTGGTTGTTGTTCTCTCAGAAAGCATGGAACC 287 Query 305 CGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAAGACCCGATTCGAGCAGG 364 || ||| |||| ||||||||||||||||||| |||| | || || ||||||||||| Sbjct 288 TGGCTTTCAGAGAGGGGATATATTGTTCTTGCGGATGACCGATGAGCCTATTCGAGCAGG 347 Query 365 TGAAATTGTTGTTTTCAATGTTGATGGTCGTGATATTCCCATTGTCCATCGTGTC-ATTA 423 || ||||||||||| | ||||||||||||||| ||||||||||| ||||| | | || | Sbjct 348 CGAGATTGTTGTTTTTAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAG-CAATCA 406 Query 424 AGGTTCACGAAAGGGAAAATAC-AGGAGAAGTTGATGTTCTAACGAAAGGTGACAATAAC 482 | ||||| || |||| | |||| | |||||||||||||||||| ||||||||||| || Sbjct 407 AAGTTCATGAGAGGGGAGATACTA-AAGAAGTTGATGTTCTAACAAAAGGTGACAACAA- 464 Query 483 T-ATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCATAT 541 | | ||||||| ||| ||||| |||||||| |||||||||||| | || ||||| Sbjct 465 TGACATTGATGACATTGGTCTCTATGCGGAAGGACAACTTTGGCTTCATAGGCACCATAT 524 Query 542 AATGGGTC-GTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACAG 600 ||||| | | ||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 525 CATGGG-CAGAGCTGTTGGGTTCCTGCCTTATGTTGGATGGGTGACTATTATCATGACAG 583 Query 601 AAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACGTC-A 659 |||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || | Sbjct 584 AAAAGCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAACATCCA 643 Query 660 AAG 662 ||| Sbjct 644 AAG 646 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32480725284 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5