BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52600.1

Length=877
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474386 jgi|Araly1|474386|fgenesh2_kg.1__4340__AT1G52600.1        1110    0.0   
  Ahg479026 jgi|Araly1|479026|fgenesh2_kg.3__1727__AT3G15710.1         510    6e-144


> Ahg474386 jgi|Araly1|474386|fgenesh2_kg.1__4340__AT1G52600.1
Length=727

 Score = 1110 bits (601),  Expect = 0.0
 Identities = 657/683 (96%), Gaps = 7/683 (1%)
 Strand=Plus/Plus

Query  1    GTGCCTTAAAGCTGACTCTGAGAGAAACTCTTCTTCTTCACTGCAAACGCTTTTGAGACA  60
            |||||||||||||||| ||||||||||  | ||||||||||||| ||||||||||| |||
Sbjct  1    GTGCCTTAAAGCTGACCCTGAGAGAAA--C-TCTTCTTCACTGC-AACGCTTTTGAAACA  56

Query  61   AAGTTCGTCACTTCGATCTGAATTATAACACTTCGTGCGAGAATC-GAAATAATCGAAGG  119
            |||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||
Sbjct  57   AAGTTCGTCACTTCGATCTGAATTATAATACTTCG-GCGAGAATCTG-AATAATCGAAGG  114

Query  120  TTCAAGATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTCAGATTCGTCAG  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  115  TTCAAGATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTCAGATCCGTCAG  174

Query  180  CTTTTCACTCAGGCCATCAGTCTAGGGATGATTGTCACATCTGCTTTGATCATATGGAAA  239
            ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  175  CTTTTCACTCAAGCGATCAGTCTAGGGATGATTGTTACATCTGCTTTGATCATATGGAAA  234

Query  240  GCTTTGATGTGTGTCACTGGAAGCGAATCTCCGGTGGTGGTTGTTCTCTCTGGAAGCATG  299
            ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  235  GCTTTGATGTGTGTCACTGGAAGTGAATCTCCGGTGGTGGTTGTTCTTTCTGGAAGCATG  294

Query  300  GAACCCGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAAGACCCGATTCGA  359
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  295  GAACCTGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAGGACCCTATTCGA  354

Query  360  GCAGGTGAAATTGTTGTTTTCAATGTTGATGGTCGTGATATTCCCATTGTCCATCGTGTC  419
            ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  355  GCAGGCGAAATTGTTGTTTTTAATGTTGATGGTCGTGATATTCCCATCGTCCATCGTGTC  414

Query  420  ATTAAGGTTCACGAAAGGGAAAATACAGGAGAAGTTGATGTTCTAACGAAAGGTGACAAT  479
            |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct  415  ATTAAGGTTCACGAAAGGGAAAATACAGGAGAAGTTGATGTTTTAACAAAAGGTGACAAT  474

Query  480  AACTATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCAT  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  475  AACTATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCAT  534

Query  540  ATAATGGGTCGTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACA  599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  535  ATAATGGGTCGTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACA  594

Query  600  GAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACGTCA  659
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  595  GAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACCTCC  654

Query  660  AAGGATTGAGTCTTTTGGAAAGG  682
            |||||||||||||||||||||||
Sbjct  655  AAGGATTGAGTCTTTTGGAAAGG  677


> Ahg479026 jgi|Araly1|479026|fgenesh2_kg.3__1727__AT3G15710.1
Length=817

 Score =  510 bits (276),  Expect = 6e-144
 Identities = 456/543 (84%), Gaps = 11/543 (2%)
 Strand=Plus/Plus

Query  126  ATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTC-AGATTCGTCAGCTTTT  184
            |||||||  || ||||||||||||||||| || ||||||| || |||| ||||||||| |
Sbjct  109  ATGGGTTTCATTGGAGAAACTGTAGATTCCATTAAATCTA-TCAAGATCCGTCAGCTTCT  167

Query  185  CACTCAGGCCATCAGTCTAGGGATGATTGTCACATCTGCTTTGATCATATGGAAAGCTTT  244
            ||||||||| |||| ||| || ||||| || |||||||| ||||| || ||||| || ||
Sbjct  168  CACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCATT  227

Query  245  GATGTGTGTCACTGGAAGCGAATCTCCGGTGGTGGTTGTTCTCTCTGGAAGCATGGAACC  304
            ||| ||||||||||| || ||||| || ||||| ||||||||||| | ||||||||||||
Sbjct  228  GATATGTGTCACTGGCAGTGAATCACCTGTGGTTGTTGTTCTCTCAGAAAGCATGGAACC  287

Query  305  CGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAAGACCCGATTCGAGCAGG  364
             || ||| |||| |||||||||||||||||||  ||||   | || || |||||||||||
Sbjct  288  TGGCTTTCAGAGAGGGGATATATTGTTCTTGCGGATGACCGATGAGCCTATTCGAGCAGG  347

Query  365  TGAAATTGTTGTTTTCAATGTTGATGGTCGTGATATTCCCATTGTCCATCGTGTC-ATTA  423
             || ||||||||||| | ||||||||||||||| ||||||||||| ||||| | | || |
Sbjct  348  CGAGATTGTTGTTTTTAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAG-CAATCA  406

Query  424  AGGTTCACGAAAGGGAAAATAC-AGGAGAAGTTGATGTTCTAACGAAAGGTGACAATAAC  482
            | ||||| || |||| | |||| |  |||||||||||||||||| ||||||||||| || 
Sbjct  407  AAGTTCATGAGAGGGGAGATACTA-AAGAAGTTGATGTTCTAACAAAAGGTGACAACAA-  464

Query  483  T-ATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCATAT  541
            | |    |||||||    ||| ||||| |||||||| |||||||||||| | || |||||
Sbjct  465  TGACATTGATGACATTGGTCTCTATGCGGAAGGACAACTTTGGCTTCATAGGCACCATAT  524

Query  542  AATGGGTC-GTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACAG  600
             ||||| | | ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct  525  CATGGG-CAGAGCTGTTGGGTTCCTGCCTTATGTTGGATGGGTGACTATTATCATGACAG  583

Query  601  AAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACGTC-A  659
            |||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || |
Sbjct  584  AAAAGCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAACATCCA  643

Query  660  AAG  662
            |||
Sbjct  644  AAG  646



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32480725284


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5