BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52690.1 Length=862 Score E Sequences producing significant alignments: (Bits) Value Ahg474395 jgi|Araly1|474395|fgenesh2_kg.1__4349__AT1G52690.1 1009 0.0 > Ahg474395 jgi|Araly1|474395|fgenesh2_kg.1__4349__AT1G52690.1 Length=752 Score = 1009 bits (546), Expect = 0.0 Identities = 642/688 (93%), Gaps = 8/688 (1%) Strand=Plus/Plus Query 76 CGAATTTCTTCGAAGAGTGAAAATGGCGTCTCATCAAGAACAGAGTTACAAAGCTGGTGA 135 ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 46 CGAGTTTTTTCGAAGAGAGAAAATGGCGTCTCATCAAGAACAGAGTTACAAAGCTGGTGA 105 Query 136 AACCAGAGGCAAGGCTCAGGAGAAAACTGGGGAAGCTATGGGAACGATGGGGGACAAAAC 195 ||| |||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 106 AACTAGAGGCAAGGTTCAGGAGAAAACAGGGGAAGCTATGGGAACCATGGGGGAGAAAAC 165 Query 196 ACAAGCAGCTAAGGACAAAACTCAAGAGACAGCCCAGTCAGCCCAACAAAAGGCTCATGA 255 ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| Sbjct 166 ACAAGCAGCTAAGGAAAAAACTCAAGAGACAGCCCAATCAGCCGAACAAAAGGCTCATGA 225 Query 256 AACAGCTCAGTCAGCTAAAGACAAGACGTCTCAAGCTGCACAAACGACTCAAGAGAGAGC 315 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| Sbjct 226 AACAGCTCAGTCAGCTAAAGACAAGACATCTCAAGCTGCACAGACGACTCAACAGAGAGC 285 Query 316 TCAAGAGTCCAAAGACAAGACAGGAAGCTACATGTCGGAAACTGGAGAAGCAATCAAGAA 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 TCAAGAGTCCAAAGACAAGACAGGAAGCTACATGTCGGAAACTGGAGAAGCAATCAAGAA 345 Query 376 CAAGGCACACGATGCAGCTGAATATACCAAAGAGACTGCAGAAGCAGGTAAGGAGAAGAC 435 |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 346 CAAGTCACAAGATGCAGCAGAATATACCAAAGAGACTGCAGAAGCAGGTAAGGAGAAGAC 405 Query 436 CAGTGGGATCTTGGGCCAGACCGGTGAGCAGGTGAAACAGATGGCTATGGGAGCTACTGA 495 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 406 GAGTGGGATCTTGGGCCAGACCGGTGAGCATGTAAAACAGATGGCTATGGGAGCTACTGA 465 Query 496 TGCGGTGAAGCACACTTTAGGGCTTCGCACTGATGAAGGAAACAAAGAACATGTTTCTTC 555 ||| ||||||||||||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 466 TGCAGTGAAGCACACTTTAGGGCTTGGCGCTGATGAAGGAAACAAAGAACAAGTTTCTTC 525 Query 556 AGCTCCAAGTACTACTACTACGACCACTACTCGTGAGACACAGAGGAAGTGAAGA-G-G- 612 |||||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 526 AGCTCCAAGTACTACTAC---GACCACTACTCGTGAGACACAGAGGAAGTGAAGAAGAGG 582 Query 613 ATAAATATTTGTTTCGTGTTCGTGGTTTTCATGTTTGTTTGCTTTGATTAGTGTTTGTTG 672 |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 583 ATAAATATTTGTTTTGTGTTCTTGGTTTTCATGTTTGTTTGCTTTGGTTAGTGTTTGTTG 642 Query 673 CGTTCGTGAGGTTATGCCGATCCTTGTTGTTGTTTATTGGGTTTGAATGTACTTCTACGT 732 ||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||||| Sbjct 643 TGTTCGTGAGATTATGTTTATCCTTCTTGTTGTTTATTGGGTTTGAATGTACTTTTACGT 702 Query 733 ATTATCATGTA--ATGGTTTTCTTTTAT 758 ||||| || | ||||||||||| ||| Sbjct 703 ATTATAATATGCGATGGTTTTCTTCTAT 730 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31908881529 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5