BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52730.2 Length=1379 Score E Sequences producing significant alignments: (Bits) Value Ahg474398 jgi|Araly1|474398|fgenesh2_kg.1__4352__AT1G52730.2 1967 0.0 Ahg479012 jgi|Araly1|479012|fgenesh2_kg.3__1713__AT3G15610.1 1157 0.0 > Ahg474398 jgi|Araly1|474398|fgenesh2_kg.1__4352__AT1G52730.2 Length=1245 Score = 1967 bits (1065), Expect = 0.0 Identities = 1173/1224 (96%), Gaps = 11/1224 (1%) Strand=Plus/Plus Query 1 CTTCCCGTCTAGATGTAGAAATCCCTAAAACTTGCTACTGTTTTGC-ATACGGGGCTTGT 59 ||||| || | ||||||||||||||||||||||||||||| ||||| |||| |||| Sbjct 1 CTTCCTGTGTCGATGTAGAAATCCCTAAAACTTGCTACTG-TTTGCAATAC----TTTGT 55 Query 60 ACAAATAAAAACCACCCAATTCCTACGCTTTCCTCTACAAATTGTCCCCttttttttttA 119 |||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||| Sbjct 56 ACAAATAAAAACCACCCAATTCCTTCGCTTTCCTCTACAAATT-TCCAC---TTTTTTT- 110 Query 120 ACTTTTATACTTTCAATTCATCTTTGGTTCTGTAGAATTCCCAGGAATCAGCATTCCACT 179 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 111 ACTTTTCTACTTTCAATTCATCTTTGGTTCTGTAGAATTCTCAGGAATCAGCATTCCACT 170 Query 180 GGTTTAGGATAGATGGAGAAGAAGAAGGTGACGATTCCACAAGTGTGTCATGGCCATTCA 239 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 171 GGTTTAGGATAAATGGAGAAGAAGAAGGTGACGATTCCACAAGTGTGTCATGGACATTCA 230 Query 240 AGACCTGTTGTTGATTTGTTCTACAGTCCAATTACTCCTGACGGTTTCTTCCTCATCAGC 299 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 231 AGACCTGTTGTTGATTTGTTCTACAGTCCAATTACGCCTGATGGTTTCTTCCTCATCAGC 290 Query 300 GCTAGCAAAGATTCGCATCCAATGTTGAGAAATGGGGAAACTGGAGACTGGATTGGTACA 359 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 291 GCTAGCAAAGATTCGCATCCAATGTTGAGAAATGGAGAAACTGGAGACTGGATTGGTACA 350 Query 360 TTTGAAGGGCATAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 TTTGAAGGGCATAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCT 410 Query 420 GCATCTGCTTCTGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGCTG 479 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 GCATCTGCTTCAGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGCTG 470 Query 480 CATTCTTTTGAGCACAAGCATATTGTCCGAGCATGCGCCTTCTCAGAGGATACAAAATCG 539 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 471 CATTCTTTTGAGCACAAGCATATTGTGCGAGCATGCGCCTTCTCAGAGGATACAAAATTG 530 Query 540 TTGCTCACAGGAGGGTTTGAGAAAATTCTTCGTGTTTTTGACATGAATCGGTTGGATGCA 599 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 531 TTGCTCACAGGAGGGTTTGAGAAAATTCTTCGCGTTTTTGACATGAATCGGTTGGATGCA 590 Query 600 CCTCCTACAGAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 CCTCCTACAGAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGT 650 Query 660 GATCAAACAATATTAAGTTCATGTACTGATATTGGCGGTGTAAGGTTATGGGATGTGAGG 719 |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct 651 GATCAAACAATATTAAGTTCCTGCACTGATATTGGTGGTGTAAGGTTATGGGATGTGAGG 710 Query 720 AGTGGGAAAATTGTGCAAACGTTAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGC 779 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 AGTGGGAAAATTGTCCAAACGTTAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGC 770 Query 780 CAAGATGGACGGTATATAACAACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAAC 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 771 CAAGATGGACGGTATATAACAACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCAAAC 830 Query 840 CATTTTGGACTAGTGAAGAGTTACGACATGCCCTGCAATATTGAATCTGCATCGTTGGAG 899 || ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct 831 CACTTTGGACTAGTTAAGAGTTACGACATGCCCTGCAATATTGAATCTGCGTCCTTGGAG 890 Query 900 CCAAAGTCTGGTGAAAAATTTGTTGCTGGTGGAGAGGATATGTGGGTCCGAGTGTTTGAT 959 |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 891 CCAAAGTCTGGTGAGAAGTTTGTTGCTGGTGGAGAGGATATGTGGGTCCGAGTATTTGAT 950 Query 960 TTCTACACTGGCGAAGAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTT 1019 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 951 TTCTACACTGGCGAAGAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTG 1010 Query 1020 AGGTTTACTCCCACTGGTTTATCCTATGCCTCGGGATCTGAAGACGGGACAATCAGAATC 1079 |||||||| |||||||| | || |||||||||||||||||||||||||| ||||||||| Sbjct 1011 AGGTTTACCCCCACTGGCCTGTCTTATGCCTCGGGATCTGAAGACGGGACCATCAGAATC 1070 Query 1080 TGGCAAACAACACCAGCAAATCCCGAAGAGAACGAAACTAGCTCGAGGAGAGTGAAGCAT 1139 ||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||| Sbjct 1071 TGGCAAACAACACCAGCAAATCCCGAAGAAAACGAAGCAAGCTCAAGGAGAGTGAAGCAT 1130 Query 1140 AGCGTGGATGAAGTTTCAAAGAAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAACC 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 AGCGTGGATGAAGTTTCAAAGAAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAACC 1190 Query 1200 GCAGAGAAACCATCTGATACTTAA 1223 |||||||||||||||||||||||| Sbjct 1191 GCAGAGAAACCATCTGATACTTAA 1214 > Ahg479012 jgi|Araly1|479012|fgenesh2_kg.3__1713__AT3G15610.1 Length=1371 Score = 1157 bits (626), Expect = 0.0 Identities = 910/1045 (87%), Gaps = 28/1045 (3%) Strand=Plus/Plus Query 190 AGATGGAGAAGAAGAAGGTGA-CGATTCCACAAGTGTGTCATGGCCATTCAAGACCTGTT 248 |||||||||||||||| || | ||| ||| | |||||| ||||||||||| ||||||||| Sbjct 252 AGATGGAGAAGAAGAAAGT-AGCGACTCCGCTAGTGTGCCATGGCCATTCGAGACCTGTT 310 Query 249 GTTGATTTGTTCTACAGTCCAATTACTCCTGACGGTTTCTTCCTCATCAGCGCTAGCAAA 308 || |||||||||||||||||||| || ||||| |||||||||||||||||||| |||||| Sbjct 311 GTGGATTTGTTCTACAGTCCAATCACACCTGATGGTTTCTTCCTCATCAGCGCAAGCAAA 370 Query 309 GATTCGCATCCAATGTTGAGAAATGGGGAAACTGGAGACTGGATTGGTACATTTGAAGGG 368 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 371 GATTCTCATCCAATGTTGAGAAATGGGGAAACTGGAGATTGGATTGGTACATTTGAAGGG 430 Query 369 CATAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCTGCATCTGCT 428 ||||||||||| || |||||||||||| |||||||||| || |||||||| || ||||| Sbjct 431 CATAAAGGTGCTGTGTGGAGTTCTTGTTTGGATAACAACGCTTTACGTGCAGCTTCTGCA 490 Query 429 TCTGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGCTGCATTCTTTT 488 ||||| ||||||||||| |||||||||||||| || || ||||||||| ||||||||||| Sbjct 491 TCTGCTGATTTTTCAGCGAAACTTTGGGATGCTTTGACCGGGGATGTGTTGCATTCTTTT 550 Query 489 GAGCACAAGCATATTGTCCGAGCATGCGCCTTCTCAGAGGATACAAAATCGT-TGCTCAC 547 ||||||||||||||||| ||||||||||||||||| ||||||| |||| | | |||| Sbjct 551 GAGCACAAGCATATTGTTCGAGCATGCGCCTTCTCTCAGGATACGAAAT-TTCTAATCAC 609 Query 548 AGGAGGGTTTGAGAAAATTCTTCGTGTTTTTGACATGAATCGGTTGGATGCACCTCCTAC 607 |||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct 610 AGGAGGATTTGAGAAAATTCTTCGTGTTTTCGACTTGAATCGCTTGGATGCACCTCCTAC 669 Query 608 AGAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGTGATCAAAC 667 |||| |||||||||||||||||||||||||||| || || ||||||||| |||||||||| Sbjct 670 AGAAATTGATAAATCTCCTGGTTCTATCAGAACACTAACTTGGCTTCACGGTGATCAAAC 729 Query 668 AATATTAAGTTCATGTACTGATATTGGCGGTGTAAGGTTATGGGATGTGAGGAGTGGGAA 727 ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| || Sbjct 730 CATATTAAGTTCTTGCACTGATATTGGCGGTGTGAGGTTATGGGATGTGAGGAGTGGCAA 789 Query 728 AATTGTGCAAACGT-TAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATG 786 |||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 790 AATTGTGCAAAC-TCTAGAAACCAAGTCTCCTGTCACCAGTGCTGAAGTGAGTCAAGATG 848 Query 787 GACGGTATATAACAACTGCTGATGGG-TCAACTGTTAAATTCTGGGACGCTAACCATTTT 845 |||||||||| |||||||| || ||| |||||||||||||| ||||| || || |||||| Sbjct 849 GACGGTATATCACAACTGCCGA-GGGATCAACTGTTAAATTTTGGGATGCAAATCATTTT 907 Query 846 GGACTAGTGAAGAGTTACGACATGCCCTGCAATATTGAATCTGCATCG-TTGGAGCC-AA 903 ||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |||| || Sbjct 908 GGACTAGTGAAGAGTTACGACATGCCCTGCAATATCGAATCTGCGTCGCTTG-AGCCTAA 966 Query 904 AGTCTGGTGAAAAATTT-GTTGCTGGTGGAGAGGATATGTGGGTCCGAGTGTTTGATTTC 962 | ||||| || || || |||||||||||||| ||||||||||| ||| | ||||||||| Sbjct 967 A-TCTGGC-AACAAGTTCGTTGCTGGTGGAGAAGATATGTGGGTTCGACTCTTTGATTTC 1024 Query 963 TACACTGGCGAAGAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTTAGG 1022 |||| || || |||||||||||||||||||||||||| ||||| || ||||| || || Sbjct 1025 CACACGGGAGAGGAGATTGGATGCAACAAGGGACATCATGGTCCGGTTCACTGTGTGAGA 1084 Query 1023 TTTACTCCCACTGGTTTA-TCCTATGCCTC-GGGATCTGAAGACGGGACAATCAGAATCT 1080 ||| | || || ||| | || ||||| || ||| |||||||| || ||||||||||||| Sbjct 1085 TTTGCACCAACAGGTG-AGTCTTATGCTTCAGGG-TCTGAAGATGGTACAATCAGAATCT 1142 Query 1081 GGCAAACAACACCAGCAAATCCCGAAGAGAAC-GAAACTAGCTCGAGGAGAGTGAAGCAT 1139 ||||||| || | ||||| ||||||||| | | | || | | | |||||| Sbjct 1143 GGCAAACTGGTCCGGTGAATCCTGAAGAGAACAGTGA--A--TCAA--A-ACCGAAGCAG 1195 Query 1140 AGCGTGGATGAAGTTTCAAAG-AAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAAC 1198 || |||||||| ||| | | |||||||||||||||||||| ||||| ||||| ||||| Sbjct 1196 AGTGTGGATGAGGTTACTC-GTAAGATTGAAGGCTTTCACATTAACAAGGAAGGGAAAAC 1254 Query 1199 CGCAGAGAAACCATCTGATACTTAA 1223 ||||||||||||||||||| ||||| Sbjct 1255 CGCAGAGAAACCATCTGATGCTTAA 1279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51618429618 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5