BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52870.2 Length=1441 Score E Sequences producing significant alignments: (Bits) Value Ahg474411 jgi|Araly1|474411|fgenesh2_kg.1__4365__AT1G52870.2 1908 0.0 > Ahg474411 jgi|Araly1|474411|fgenesh2_kg.1__4365__AT1G52870.2 Length=1391 Score = 1908 bits (1033), Expect = 0.0 Identities = 1292/1412 (92%), Gaps = 37/1412 (3%) Strand=Plus/Plus Query 16 ATAAGATAACGTCCGTTTCAAAT------TCCCCCAACTCGGAGAAACCGAAGCGAGTCT 69 ||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 1 ATAAGATAAAGTCCGTTTCAAATCCCCCCCCCCCCAACTCGGAGAAACCGAAGCAAGTCT 60 Query 70 GACTCTCTGAGTCGTCACCACCGAGTCAACTC-T-GTCTCCGCCATGGCTGCTGCTTCAC 127 ||||| |||| |||| |||||||||||||| | ||||||||||||||||||||||||| Sbjct 61 GACTCACTGA---GTCATCACCGAGTCAACTCTTCGTCTCCGCCATGGCTGCTGCTTCAC 117 Query 128 TCCACACTTCAATCTCACCACGTAGCTTCCTTCCTCTCTCCAAACCATCTCTAAAACCTC 187 ||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 118 TCCACACCTCAATCTCTCCACGTAGCTTCCTTCCTCTCTCTAAACCGTCTCTGAAACCTC 177 Query 188 ACCGTTCCCAAATTCTACTGAGAAACAAACAGAGGAATTGCGTTTCGTGCGCATTGATCC 247 |||||||||||||| | |||||||||||||||||| | ||||||| ||||||| Sbjct 178 ACCGTTCCCAAATTTTCCTGAGAAACAAACAGAGG-A--------CGTGCGCGTTGATCC 228 Query 248 GTGACGAAATCGACCTGATTCCGGTTCAGAGCCGAGATCGGACCGACCATGAGGAAGGTT 307 |||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||| Sbjct 229 GTGACGAAATCGACGTGATTCCGGTTCAGAGCCGAGATCGTACGGACCATGAGGAAGGTT 288 Query 308 CGGTGGTAGTGATGAGCACTGAGACGGCGGTTGATGGTAATGAATCGGTTGTTGTAGGTT 367 |||| || || ||||| ||||||||| | | |||| ||| ||| |||| |||||||| | Sbjct 289 CGGTCGTGGTTATGAGTGCTGAGACGGAGATAGATGTTAACGAACCGGTGGTTGTAGGGT 348 Query 368 TTAGTGCTGCGACGAGTGAAGGTCAGCTTTCGTTAGAAGGGTTTCCTTCTTCTTCTTCTT 427 |||||||||| ||||| ||||||||||||||||| |||||| | ||| |||||| Sbjct 349 TTAGTGCTGCAACGAGCGAAGGTCAGCTTTCGTTGGAAGGG------T-TTC--CTTCTT 399 Query 428 CGGGAGCTGATTTAGGAGATGAAAAGAGAAGAGAGAACGAAGAAATGGAGAAGATGATCG 487 |||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 400 CGGGAGGTGATTTGGGAGATGAGAAGAGAAGAGAGAACGAAGAAATGGAGAAGATGATTG 459 Query 488 ATCGAACCATTAACGCTACGATTGTTTTAGCTGCTGGTTCTTACGCTATTACCAAATTGC 547 || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 460 ATAGAACCATTAACGCTACGATTGTTTTAGCTGCTGGTTCTTACGCCATTACCAAATTGC 519 Query 548 TTACCATCGATCATGATTATTGGCATGGATGGACTCTGTTTGAGATACTAAGATATGCTC 607 | ||||| ||||||||||||||||||| |||||| |||||||| || ||||||||||||| Sbjct 520 TCACCATTGATCATGATTATTGGCATGTATGGACACTGTTTGAAATTCTAAGATATGCTC 579 Query 608 CTCAACATAACTGGATTGCTTACGAAGAAGCGCTAAAGCAAAACCCGGTTCTAGCAAAAA 667 |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| Sbjct 580 CTCAACATAACTGGATTGCTTACGAAGAAGCGTTAAAGCAAAACCCGGTTCTGGCGAAAA 639 Query 668 TGGTCATTAGTGGAGTTGTCTACTCTGTAGGAGATTGGATAGCTCAGTGTTACGAAGGCA 727 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 TGGTCATAAGTGGAGTTGTCTACTCTGTAGGAGATTGGATAGCTCAGTGTTACGAAGGCA 699 Query 728 AACCGTTGTTTGAAATTGATAGAGCAAGAACATTGAGATCAGGACTAGTAGGTTTCACTC 787 |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| Sbjct 700 AACCCTTGTTTGAAATTGATCGAGCAAGAACATTGAGATCAGGACTAGTGGGTTTTACTC 759 Query 788 TCCATGGCTCGTTATCGCATTTCTATTACCAGTTCTGTGAAGAGCTTTTCCCGTTTCAAG 847 ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 760 TCCATGGCTCGTTGTCTCATTTCTATTACCAGTTCTGTGAAGAGCTTTTCCCTTTTCAAG 819 Query 848 ATTGGTGGGTGGTTCCTGTGAAAGTTGCCTTTGATCAAACAGTCTGGTCAGCTATATGGA 907 ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| Sbjct 820 ATTGGTGGGTGGTTCCTGTGAAAGTTGTCTTTGATCAAACAGTATGGTCGGCTATATGGA 879 Query 908 ACAGTATTTACTTCACGGTTCTT-GGTTTCCTGCGT-TTCGAATCGCCTATCAGCATCTT 965 | ||||||||||||||||||||| ||||| |||||| || ||||| ||| |||| ||||| Sbjct 880 ATAGTATTTACTTCACGGTTCTTGGGTTT-CTGCGTCTT-GAATCTCCTCTCAGTATCTT 937 Query 966 CAAAGAACTAAAAGCTACGTTCTTGCCTATGCTAACAGCAGGTTGGAAGCTTTGGCCATT 1025 |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 938 CAAAGAACTAAAAGCTACCTTCTTGCCTATGCTAACCGCAGGTTGGAAACTTTGGCCATT 997 Query 1026 TGCTCATTTGATCACATACGGTTTGGTCCCAGTAGAACAACGACTTCTCTGGGTAGATTG 1085 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 998 TGCTCATTTGATCACATACGGTTTGGTCCCTGTAGAACAACGACTTCTCTGGGTAGATTG 1057 Query 1086 CGTGGAGCTTATTTGGGTCACTATACTTTCGACTTACTCGAACGAGAAATCAGAAGCTAG 1145 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1058 CGTGGAGCTTATTTGGGTCACTATACTTTCGACTTACTCGAATGAGAAATCAGAAGCTAG 1117 Query 1146 AATCTCGGAATCTGTCATTGAGACCTCTTCGAGTTCTACTACAACCATTGATCCCTCTAA 1205 ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| || Sbjct 1118 AATCTCGGAATCTGTCATTGAAACCTCTTCGAGTTCTACAACATCCATTGATCCCTCCAA 1177 Query 1206 GGAATGAGAAAGCAGAAAAGCCAAATCGGGTCTTATCAGCATCATATTGTATATATACA- 1264 |||||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||| Sbjct 1178 GGAATGAGAAAGCAGAAAAGGCAAATCAGGTCTAATCAGCTTCATATTGTATATATACAC 1237 Query 1265 -GAGTTTAGCCAATAAAGTGGCCAGAGATTTGAGATTGATACAGAGGAGATGGAGATATT 1323 |||||||||||| | |||||| |||||||||||||||||||||||||||| ||||||| Sbjct 1238 AGAGTTTAGCCAACAGAGTGGCTGGAGATTTGAGATTGATACAGAGGAGATGAAGATATT 1297 Query 1324 CAAATGGATGTATCTATTAATGTGTAAGAAAAATAACCAGAATCTTGAATACACAATAGA 1383 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1298 CAAATGGATGTATCTCTTAATGTGTAAGAATAATAACCAGAATCTTGAATACACAAGAGA 1357 Query 1384 AA-CAATTTTATTTGATCACAGTGCTCTAATA 1414 || || |||||||||||||||||||||||||| Sbjct 1358 AAACA-TTTTATTTGATCACAGTGCTCTAATA 1388 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53897696675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5