BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52880.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474412 jgi|Araly1|474412|fgenesh2_kg.1__4366__AT1G52880.1 1672 0.0
> Ahg474412 jgi|Araly1|474412|fgenesh2_kg.1__4366__AT1G52880.1
Length=1324
Score = 1672 bits (905), Expect = 0.0
Identities = 1156/1269 (91%), Gaps = 50/1269 (4%)
Strand=Plus/Plus
Query 2 CCATTTTGATTTGTCGTTTTAATGC-CTTCCATTTTTAAAAAGAAAGATTACTAACGCCG 60
||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||
Sbjct 1 CCATTTTGATTTGTCGTTTTATTGCGTTTCCA-TTTAAAAAAGAAAGATTACTAACGCCG 59
Query 61 ACTCTCTAAAACTCTCTCAAACCATAAAAAATATTCTCCGATCATCATTTTAATGGAGAG 120
||||||| |||||||||||| ||| ||||| | || | ||
Sbjct 60 ACTCTCTCAAACTCTCTCAA-CCA-AAAAA-TG------GA-------------G-AG-- 94
Query 121 TACAGATTCTTCCGGTGGTCCTCCGCCGCCGCAACCAAACCTCCCTCCAGGATTCCGGTT 180
||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 95 TACAGATTCCTCCGGTGATCCTCCGCCGCCGCAACCAAACCTCCCTCCAGGGTTCAGGTT 154
Query 181 TCATCCAACAGACGAAGAACTTGTAATTCATTACCTCAAACGCAAAGCAGATTCTGTTCC 240
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 155 TCATCCAACAGACGAAGAACTCGTAATTCATTACCTCAAACGCAAAGCTGATTCTGTTCC 214
Query 241 TTTACCAGTCGCGATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCC 300
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 215 TTTACCAGTAGCAATCATCGCCGACGTTGATCTTTACAAATTCGATCCATGGGAACTTCC 274
Query 301 CGCGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATCGGAAATA 360
||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 275 CGCGAAAGCTTCGTTTGGAAAACAAGAATGGTATTTTTTCAGTCCTCGTGATCGGAAATA 334
Query 361 TCCCAACGGAGCTAGACCTAACCGAGCTGCGACTTCCGGTTATTGGAAAGCGACTGGTAC 420
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TCCAAACGGAGCAAGACCTAACCGAGCTGCGACTTCCGGTTATTGGAAAGCGACTGGTAC 394
Query 421 AGATAAACCGGTGATTTCAACCGGCGGTGGTGGTAGTAAAAAAGTGGGAGTTAAAAAGGC 480
|||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||
Sbjct 395 AGATAAACCGGTGATTTCAACCGGTGGCGGTGGTAATAAAAAAGTGGGAGTTAAAAAAGC 454
Query 481 TCTAGTGTTTTACAGTGGTAAACCACCAAAAGGAGTTAAATCAGATTGGATTATGCATGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TCTAGTGTTTTACAGTGGTAAACCACCAAAAGGAGTTAAATCAGATTGGATTATGCATGA 514
Query 541 ATATCGGTTAACTGATAATAAACCTACTCATATTTGTGACTTCGGCAACAAGAAAAACTC 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 ATATCGATTAACTGATAATAAACCTACTCATATTTGTGACTTCGGCAACAAGAAAAACTC 574
Query 601 TCTCAGGCTTGATGATTGGGTGTTGTGTCGTATCTACAAGAAAAACAATAGTACAGcatc 660
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 575 TCTCAGGCTTGATGATTGGGTGTTGTGTCGAATCTACCAGAAAAACAATAGTACAACATC 634
Query 661 tagacatcatcatcatcttcatcatattcatctagataat---gatcatcatcgtcatga 717
| ||||||||||||||| ||||| | | ||||| |||||| |||||||||||||||||
Sbjct 635 TCGACATCATCATCATCATCATC-T-T-CATCTGGATAATAATGATCATCATCGTCATGA 691
Query 718 tatgatgattgatgatgatcgatTCCGTCATGTTCCTCCTGGTCTTCACTTCCCGGCGAT 777
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 692 TATGATGATTGATGATGAGCGATTTCGTCATGTTCCTCATGGTCTTCACTTCCCGGCGAT 751
Query 778 TTTTTCTGACAATAATGATCCGACGGCTATATATGATGGTGGCGGCGGCGGATACGGAGG 837
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 752 TTTTTCAGATAATAATGATCCGACGGCTATATATGATGGTGGTGGCGGCGGATACGGCGG 811
Query 838 TGGAAGTTACTCGATGAATCATTGTTTCGCATCTGGATCAAAGCAGGAGCAGTTGTTTCC 897
|||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 812 CGGAAATTACTCGATGAATCATAACTTCGCATCTGGATCGAAGCAGGAGCAGTTATTTCC 871
Query 898 ACCGGTGATGATGATGACTAGTCTAAATCAAGATTCCGGTATTGGATCGTCGTCGTCACC 957
|||||||||||||||||| | | ||||||||||||| |||||||||||||| ||||||||
Sbjct 872 ACCGGTGATGATGATGACGAATATAAATCAAGATTCTGGTATTGGATCGTCTTCGTCACC 931
Query 958 TAGCAAGAGATTTAACGGCGGCGGCGTTGGAGATTGTTCGACTTCTAT-GGCGGCGACGC 1016
|| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 932 TAACAAGAGATTTAACGGCGGCGGCGTTGGAGATTGTTCGACTTC-ATTGGCGGCGACGC 990
Query 1017 CGTTAATGCAGAACCAAGGTGGGATTTACCAATTGCCTGGTTTGAATTGGTATTCTTGAA 1076
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 991 CGTTAATGCAGAACCAAGGTGGGATTTACCAGTTGCCTGGTCTGAATTGGTACTCTTGAA 1050
Query 1077 A-ACAATTTACGATGA-AGAATTTTTAAAATTTGTGTATATATATACGGTTTGAGTGATT 1134
| | ||||| |||| | | |||||||||||||||| |||||||||||||||||| |||
Sbjct 1051 ATAAAATTT-CGATTTTATA-TTTTTAAAATTTGTGTGTATATATACGGTTTGAGTAATT 1108
Query 1135 AGGGGGCATTGGGGGATTTATTTACGGTTGATTATTATTGTA--GTGTTATAGAAC---T 1189
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
Sbjct 1109 AGGGGGCATTGGGGGATTTAATTACGGTTGATTATTATTGTATAGTGTTATAGAACGAAT 1168
Query 1190 -AAGGAGATTAAATTAAATAGATT---GGAGGAGAGGTATAAGGTAACATATAGAAATTA 1245
||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 1169 TAAGGAGATTAATTTAAATAGATTAATGGAGGAGAGGTG-A-GGTAACATATAGAAATTA 1226
Query 1246 TACAACAAT 1254
|||||||||
Sbjct 1227 TACAACAAT 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5