BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53025.1 Length=2029 Score E Sequences producing significant alignments: (Bits) Value Ahg923840 jgi|Araly1|923840|scaffold_105121.1 2567 0.0 Ahg923838 jgi|Araly1|923838|scaffold_105119.1 130 4e-29 > Ahg923840 jgi|Araly1|923840|scaffold_105121.1 Length=1678 Score = 2567 bits (1390), Expect = 0.0 Identities = 1591/1686 (94%), Gaps = 22/1686 (1%) Strand=Plus/Plus Query 130 AAACTTTGGGAATTTCGTCAATGGAGCCTGACGTGGTGGAGATCCCTCCTCCTCCTCTGA 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAACTTTGGGAATTTCGTCAATGGAGCCTGACGTGGTGGAGATCCCTCCTCCTCCTCTGA 60 Query 190 TCGCTTCGGGTTCTAGAACTCGTAAACCCAGAAAGGCTGTTCCTGAAGTGATTGATGTGG 249 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCGCTTCGGGCTCTAGAACTCGTAAACCCAGAAAGGCTGTTCCTGAAGTGATTGATGTGG 120 Query 250 AAAGTTATGAATTCCGCAATGTTGGTGTTGTTAA--G-GATAACAATGTTGTTGATAAGA 306 ||| |||||||||||| |||||||||| | |||| | | |||||||||||||||||||| Sbjct 121 AAAATTATGAATTCCGGAATGTTGGTGGTCTTAATGGTGGTAACAATGTTGTTGATAAGA 180 Query 307 AGAACAAAGGGAAGGCAATACAAGTTGACTCCTTTTCTTTCAACAACGTTCAATCTCATC 366 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 181 AGAACAAAGGGAAGGCAATACAAGTTGACTGCTTTTCTTACAACAACGTTCAATCTCATC 240 Query 367 ATCATGGATCGTCGCTGCTTAACTTAGAGACGTTCCAAGACTATTATGGTCATAAGAATA 426 ||| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATCCTGGATCTTCGCCGATTAACTTAGAGACGTTCCAAGACTATTATGGTCATAAGAATA 300 Query 427 TCCCTTTTAGTGAATTTGCTAATCAACCAATTGATGTTGATGACTACTCAATGTATCAAG 486 |||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||| Sbjct 301 ACCCTTTTAGTCAATTTTCTAATCAACCAATTGATGTTGATGACTACACAATGTTTCAAG 360 Query 487 ACGTTCTAGATCCTAAGGATGTTCCAGCTGGTGCAGAGGTGACG---GTACCTTGGGGTT 543 ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||| Sbjct 361 ACGTTCTAGATCCTAAGAATGTCCCAGCCGGTGCAGAGGTGACGACAGTACCTTGGGGTT 420 Query 544 TAAATTCGAGCAGTAAGGGAACTGCGAAATCAAGTATAAGCA-TTATGAGAAGTCAATCC 602 |||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||| Sbjct 421 TAAATTCGAGCAGTAAGGGAACAGCGAAATCAAGTAGAAGCAGTT-TGAGAAGTCAATCG 479 Query 603 ATGAAAGGA-TATGGAACAGT-ATCTCTGGCAACGACTAATGTTCCTCAATTATGGGATT 660 |||||| || |||||||| | |||||||||||| ||| ||||||||||||||||||||| Sbjct 480 ATGAAA-GAGTATGGAAC-CTCATCTCTGGCAACTACTCATGTTCCTCAATTATGGGATT 537 Query 661 ATACTTTGCCTCAGCAGAATCAGGCTATCTATTCTTCTGTATCGTTTTCTGCGGTTCAAC 720 || |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 538 ATTCTTTGCCTCAACAGAATCAGCCTATCTATTCTTCTGTATCGTTTTCTGTGGTTCAAC 597 Query 721 CTCAGACTCCTGATGTAGTGATGGTCACC-AATCCTACTCCAAACCCTTTTAG-TTATGA 778 ||||||||||||||||| |||||||| || ||||||||||||||||||||||| || ||| Sbjct 598 CTCAGACTCCTGATGTATTGATGGTC-CCGAATCCTACTCCAAACCCTTTTAGATT-TGA 655 Query 779 TGCTTCTGCTAGTTCTTCTCATCCTATAGCGGCTGAGCCTATTTCTTCAGTTCAGGATTC 838 |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| Sbjct 656 TGCTTCTGCTAGTTCTTCTCGCCCTATAGCGGCTGGGCCTATTTCTTCAGTCCAGGATTC 715 Query 839 TTCCAATGCT-AGGAAACTTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACACCG 897 |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 716 TTCCAATG-TCAGGAAAATTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACACTG 774 Query 898 TCGAGGATTTCTCAGATCATCACTATGCTTCAAAGGGTAAATCTTCAAAGCAGCACTCGA 957 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 775 TTGAGGATTTCTCAGATCATCACTATGCTTCTAAGGGTAAATCTTCAAAGCAGCACTCCA 834 Query 958 AGAATTGGGTGAAAAAGGTTCAAGCAGATTGGAAGATTCTTGAGAATGATTTGCCAGAGG 1017 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 835 AGAATTGGGTGAAAAAGGTGCAAGCAGATTGGAAGATTCTTGAGAATGATTTGCCAGAGG 894 Query 1018 CAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAG 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 CAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAG 954 Query 1078 CTGAGGGAACTCCTTACCATGACGGTCTTTTCTTCTTCGATATTCAGTTCCCAGATACTT 1137 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 955 CCGAGGGAACTCCTTACCATGATGGTCTTTTCTTCTTCGATATTCAGTTCCCAGATACCT 1014 Query 1138 ATCCTTCAGTGCCACCGAATGTTCATTACCATTCTGGTGGGCTTAGAATCAACCCGAATC 1197 |||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct 1015 ATCCTTCAGTACCACCAAAAGTTCATTACCATTCCGGTGGGCTTAGAATCAACCCGAATC 1074 Query 1198 TATACAATTGTGGGAAAGTATGCTTGAGTCTTCTCGGTACCTGGGCAGGTAGCGCGAGGG 1257 ||||||||||||| |||||||||||||||||||||||||||||||| || || || |||| Sbjct 1075 TATACAATTGTGGTAAAGTATGCTTGAGTCTTCTCGGTACCTGGGCCGGCAGTGCTAGGG 1134 Query 1258 AGAAATGGCTCCCAAATGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAAGCACTCA 1317 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 AGAAATGGCTCCCAAAGGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAAGCACTCA 1194 Query 1318 TCTTGAATGAAAAACCATACTTTAACGAACCTGGCTACGTACAGAGCGCGGGGACTGCAT 1377 |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 1195 TCTTGAATGAAAAACCATACTTTAACGAGCCTGGCTACGTACAGAGCATGGGGACTGCAT 1254 Query 1378 CAGGCGAGTCCAAGTCTAAAGTTTACAGTGAGAACGTATTTCTATTGTCGTTAAAGACTA 1437 ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1255 CAGGCGAGTCCCATTCTAAAGTTTACAGTGAGAACGTATTCCTATTGTCGTTAAAGACTA 1314 Query 1438 TGGTTTACAGCATAAGAAGACCACCCCAGCATTTTGAAGAGTATGTTCAAAACCATTACT 1497 ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1315 TGGTTTACAGCATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAACCATTTCT 1374 Query 1498 TTGTCCGGTCTCACGACATTGTGAAAGCATGCAATGCTTATAAAGCTGGAGCTCCGCTTG 1557 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1375 TCGTCCGGTCTCACGACATTGTGAAAGCGTGCAATGCTTATAAAGCTGGAGCTCCGCTTG 1434 Query 1558 GATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAAGAAGCTAGACAGAGCGGCTCCAAGA 1617 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 1435 GATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAACAAGCTAGCCAGAGCGGCTCCAAGA 1494 Query 1618 AGTTTAAGACCGATGTAGCTAGCTTTATGCAGACAGTGGTTGATGAATTCGTCAAACTAG 1677 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 1495 AGTTTAAGACCGATGTAGCTCGCTTTATGCAGACAGTTGTTGATGAATTCGTCAAACTAG 1554 Query 1678 GAGTCAAGGAGCTTGCAGAAAAACCAGAACCGCCT-ATGAGCAATGCTAACACAGAGAAT 1736 |||||||||||||||||||||||||| |||| ||| | ||||| |||||||||||||||| Sbjct 1555 GAGTCAAGGAGCTTGCAGAAAAACCAAAACCACCTGA-GAGCAGTGCTAACACAGAGAAT 1613 Query 1737 CAGAGCAAGaaaa-aaaCCCGTAAGAGAAGCAGATCATCGAGGTGAGCCAAATCCACCAA 1795 |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1614 CAGAGCAATAAAACAAACC-GTAAGAGAAGCAGATCATCGAGGTGAGCCAAATCCACCAA 1672 Query 1796 ATGTTT 1801 |||||| Sbjct 1673 ATGTTT 1678 > Ahg923838 jgi|Araly1|923838|scaffold_105119.1 Length=851 Score = 130 bits (70), Expect = 4e-29 Identities = 74/76 (97%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 1025 TGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCTGAGGG 1084 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3 TGTCAGAGCTTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCCGAGGG 62 Query 1085 AACTCCTTACCATGAC 1100 |||||||||||||||| Sbjct 63 AACTCCTTACCATGAC 78 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76294760735 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5