BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53080.1 Length=852 Score E Sequences producing significant alignments: (Bits) Value Ahg474427 jgi|Araly1|474427|fgenesh2_kg.1__4381__AT1G53080.1 1225 0.0 Ahg914486 jgi|Araly1|914486|Al_scaffold_0001_4740 296 2e-79 > Ahg474427 jgi|Araly1|474427|fgenesh2_kg.1__4381__AT1G53080.1 Length=834 Score = 1225 bits (663), Expect = 0.0 Identities = 783/841 (93%), Gaps = 8/841 (1%) Strand=Plus/Plus Query 1 ATGCAGATCCACAAACTCTGTATTTTTGTTCTGTTCATATCTTTGTTAAGCTCTAAAACC 60 ||||||||||| ||||||||| |||||| |||||||||||||||||| ||| |||||||| Sbjct 1 ATGCAGATCCAAAAACTCTGTTTTTTTGCTCTGTTCATATCTTTGTTCAGCACTAAAACC 60 Query 61 ATTTCCGCCGTCAAATTCAACTTCAACCGTTTCGACGGAACAAATCTAATCTTCATCGGG 120 |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||| Sbjct 61 ATTTCCGCCGTCAAATTCAACTTCAACCATTTCGACGGTACAGATCTAATCTTCCTCGGG 120 Query 121 TACGCCGAGCTAGGACCAGCAACCGATGGCATGAGCCGGTCCGGAGCTCTCTCCATGACC 180 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TACGCGGAGCTGGGACCAGCAACCGATGGCATGAGCCGGTCCGGAGCTCTCTCCATGACC 180 Query 181 CGTGACAACATTCCATTCTCACATGGTCAAGGTCTCTACACAGATCCAATCCCATTCAAA 240 |||| ||| | ||| ||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 181 CGTGGCAAAAATCCTTTCTCACATGGTCGAGGTCTCTACACAGATCTAATCCCATTCAAA 240 Query 241 TCTTCCAACAACACATCTTCTTCTGTTTACTCTTTCAAAACATCTTTCACTTTCTCCATC 300 ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 241 TCTTCCAACAACATTTCTTCTTCTGTTTACTCTTTTAAAACATCTTTCACTTTCTCTATC 300 Query 301 ACTCCTCGACGGTCAAACCCTAACCCTGGTCATGGTATCGCCTTCATCGTGGTCCCAACC 360 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 301 ACTCCTCGCCGGTCAAACCCTAACCCTGGTCATGGTCTCGCCTTCATCGTGGTCCCAACC 360 Query 361 GTAGCCTACGAGTACGACCAAGACTCAACCCGCGGCTTCCTCGGTCTAGTTAACCTCACA 420 | ||| | |||||||||||||||||||| |||||||| ||||||||||||| |||| Sbjct 361 --A---TAC-ACTACGACCAAGACTCAACCCGTGGCTTCCTTGGTCTAGTTAACCGCACA 414 Query 421 ACCAATGGCAATCCTAATAACCATCTCTTTGCGGTCGAATTCGATGTTTTCCAAGACAAA 480 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 415 ACCAATGGCAATCCTAATAACCATCTTTTTGCGGTTGAATTCGATGTTTTCCAAGACAAA 474 Query 481 CGTTTTGGTGATATTAATGATAATCATGTTGGTGTTAATATTAACTCTGTTAACTCAAAG 540 ||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| Sbjct 475 CGTTTTGGTGATATTAATGATAATCATGTTGGTATCAATATTAACTCTGTTACCTCAAAA 534 Query 541 GTTTCTGAGAAAGCTGGGTATTGGATTCAGACAAGAACTAGAGGGAAGAATCAATGGTTG 600 ||||||||||||||||| |||||| |||||||||||||| |||| || |||||||||||| Sbjct 535 GTTTCTGAGAAAGCTGGTTATTGGGTTCAGACAAGAACTGGAGGAAACAATCAATGGTTG 594 Query 601 TTTAAGGAAGTGAAGCTTAGTAGCGGAGACAACTACAAAGCTTGGATTGAGTATAAGAAC 660 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| Sbjct 595 TTTAAGGAAGTGAAGCTTAGTAGCGGAGATAACTACAAAGCTTGGATCGAGTACAAGAAC 654 Query 661 AGTAAAGTCATTGTTTGGCTTGCACCTGCGCATTTAAAGAAACCGAAGAGGCCATTGATC 720 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 655 AGTAAAGTCATTGTTTGGCTCGCACCTGCCCATTTAAAGAAACCGAAGAGGCCATTGATC 714 Query 721 GAAACACAAGTTGATCTCTCGGAGGTGGTTCTTGAGACTATGTATACCGGCTTTTCC-GG 779 |||||||||||||||||||| |||||||||||||| || |||||||| || |||| | || Sbjct 715 GAAACACAAGTTGATCTCTCTGAGGTGGTTCTTGAAACAATGTATACTGG-TTTTGCTGG 773 Query 780 TTCGATGGGTCGTGGCGTCGAGCGTCACGACATTTGGAGCTGGAGTTTTGAGAACACCGC 839 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 774 TTCGATGGGTCGTGGCATCGAGCGTCACGACATTTGGAGCTGGAGTTTCGAGAACACCGC 833 Query 840 C 840 | Sbjct 834 C 834 > Ahg914486 jgi|Araly1|914486|Al_scaffold_0001_4740 Length=729 Score = 296 bits (160), Expect = 2e-79 Identities = 565/752 (75%), Gaps = 62/752 (8%) Strand=Plus/Plus Query 119 GGT-ACGCCGAGCTA-GGACCAGCA-ACCGATGGCATGAGCCGGTCCGGAGCTCTCTCCA 175 ||| |||||||| || | |||| | ||||||| |||||| ||| |||||||| | | Sbjct 13 GGTGACGCCGAG-TATGCTCCAG-AGCCCGATGGTATGAGCAAGTCAGGAGCTCT-TGGA 69 Query 176 -TGACCCGTGACAACATTCCATTCTCACATGGTCAAGGTC-TCTACA-CAGATCCAATCC 232 ||| ||||||||| | || ||||| ||||||| | | | | | || || ||||||||| Sbjct 70 TTGAGCCGTGACAATGTCCCTTTCTCTCATGGTCGA-GCCATTTTCATCA-ATCCAATCC 127 Query 233 CATTCAAATCTTCCAACAAC-ACATCTTCTTCTGTTTACTCTTTCAAAACATCTTTCACT 291 | |||||| | | || | | ||||| ||||| |||||||||||||| ||||||||| Sbjct 128 CTTTCAAA-C--CTAA-TGCTTCTTCTTCCTCTGTCTACTCTTTCAAAACTTCTTTCACT 183 Query 292 TTC-TCCATCACTCCTCGACGGTCAAACCCTAA-CCCTGGTCATGGTATCGCCTTCATCG 349 ||| | ||| | |||||| ||| ||| ||||| ||| |||||||| ||||||| || | Sbjct 184 TTCGT-CATTAGTCCTCGCCGGAAAAATCCTAATCCC-GGTCATGGCCTCGCCTTTATTG 241 Query 350 TGGT-CCCAACCGTAGCCTACGAGTACGAC-CAAGAC-TCAACCCGCGGCTTCCTCGGTC 406 | || ||||| || | || | ||||| | | | || |||| |||| ||| Sbjct 242 TCGTCCCCAA-CG-A---TA--AAAACGACTC-TG-CTTCTGGTTTAGGCTACCTCAGTC 292 Query 407 TAGTTAACC--TCACAACCAATGGCAATCCTAATAACCATCTCTTTGCGGTCGAATTCGA 464 | || |||| | || ||| || ||||| || |||||||||||||||||||||||||| Sbjct 293 TTGTGAACCGGT-TTAA-CAACGGTAATCCCAAGAACCATCTCTTTGCGGTCGAATTCGA 350 Query 465 TGT-TTTCCAAGACAAACGT-T-TTGGTGATATTAATGATAATCATGTTGGTGTTAATAT 521 ||| ||| ||||||| || | |||| || ||||| ||||| |||||||| | || || Sbjct 351 TGTCTTTA-AAGACAA--GTCTCTTGGCGACATTAACGATAACCATGTTGGAATCAACAT 407 Query 522 TAACTCTGTTAACTCAAAGGTTTCTGAGAAAGCTGGGTATTGGATTCAGA-CAAGAACTA 580 ||| || ||||| |||| ||||||| ||||||| || ||||||||||| | ||||||| Sbjct 408 TAATTCGGTTAATTCAACGGTTTCTAAGAAAGCCGGTTATTGGATTCA-ATCAAGAACCG 466 Query 581 GAGGGAAGAATCAA-TGGTTGTTTAAGGAAGTGAAGCTTAGTAGCGGA-GACAACTACAA 638 |||| || || | |||||||| |||||| ||||||| ||| | | | | |||| Sbjct 467 GAGGAAA-AAGCCGGTGGTTGTTCAAGGAATTGAAGCTAAGT-GAAAATGG-A--TACAG 521 Query 639 AGCTTGGATTGAGTATAAGAACAGTAAAGTCATTGTTTGGCTTGCACCTGCGCATTTAAA 698 |||||||| ||||| ||||| | ||||| | || | | | || | | || ||| Sbjct 522 GGCTTGGATAGAGTACGAGAACGGGAAAGTGACAGTCACGATCGGACGTTCTCAGG-AAA 580 Query 699 GAAACCGAAGAGGCCATTGATCGAAAC-ACAAGTTGATCTCTCGGAGGTGGTTCTT-GAG 756 || ||||||||||||||||||||| | | | || ||||| || |||| || || ||| Sbjct 581 -AA-CCGAAGAGGCCATTGATCGAAGCGAGA-GTCGATCTTTCTAAGGTTTTT-TTCGAG 636 Query 757 ACTATGTATACCGGCTTTT-CCGGTTCGATGGGTCGTGGCGTCGAGCGTCACGACAT-TT 814 | |||||| |||| |||| ||||||| ||||| |||||||||||||||||||| || || Sbjct 637 AAAATGTATGCCGG-TTTTGCCGGTTCAATGGGACGTGGCGTCGAGCGTCACGAGATCTT 695 Query 815 GGAGCTGGAGTTTTGAGAACACCGCCAAAAAC 846 ||| ||||||||||||||||| ||||||||| Sbjct 696 GGA-CTGGAGTTTTGAGAACAGTGCCAAAAAC 726 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31527652359 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5