BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53090.1 Length=2690 Score E Sequences producing significant alignments: (Bits) Value Ahg914489 jgi|Araly1|914489|Al_scaffold_0001_4743 3563 0.0 Ahg929326 jgi|Araly1|929326|scaffold_301783.1 521 8e-147 > Ahg914489 jgi|Araly1|914489|Al_scaffold_0001_4743 Length=2361 Score = 3563 bits (1929), Expect = 0.0 Identities = 2247/2395 (94%), Gaps = 44/2395 (2%) Strand=Plus/Plus Query 94 ATGAAGGGTTCTTCAGAATCTAGTTCCAGAGGATTAAACAACACCTCTGGTGTTTCAGAG 153 |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGAAGGGTTCTTCAGAATCTAATTCCAGAGGATTAAACAACACATCTGGTGTTTCAGAG 60 Query 154 TTTTGTACAGATGGTTCTAAGTCTTTGTCTCACATTGATTATGTCAGAAGCTTACTTGGT 213 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTTTGTACTGATGGTTCTAAGTCTTTGTCTCACATTGATTATGTCAGAAGCTTACTTGGT 120 Query 214 TCACATAAAGAAGCTAACTTGGGAGGACTTGATGATGACTCTATTGTCAGAGCTTTGGAA 273 ||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 121 TCACACAAAGAAGATAACTTGGTTGGACTTGATGATGACTCTATTGTTAGAGCTTTGGAA 180 Query 274 TGTGAGGATGTTAGCTTGCGTCAGTGGTTAGACAATCCAGACCGATCCGTTGATGCCTTT 333 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 TGTGAGGATGTTAGCTTGCGTCAGTGGTTAGACAATCCGGACCGATCCGTTGATGCCTTT 240 Query 334 GAGTGTTTTCATGTTTTCAGACAGATTGTTGAGATTGTTAATGCAGCTCACTCTCAAGGC 393 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 241 GAGTGTTTTCACGTTTTCAGACAGATTGTTGAGATTGTGAATGCAGCTCACTCCCAAGGC 300 Query 394 ATTGTTGTTCATAATGTTAGGCCTTCTTGTTTCGTTATGTCTTCGTTTAACAATGTTTCG 453 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 301 ATTGTTGTTCATAATGTTAGGCCTTCTTGTTTCGTTATGTCTTCGTTTAACCATGTTTCG 360 Query 454 TTTATCGAATCCGCTTCTTGTTCGGATTCCGGGTCTGATGAGGATGCAACAACAAAGTCT 513 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTTATCGAATCCGCTTCATGTTCGGATTCCGGGTCTGATGAGGATGCAACAACAAAGTCT 420 Query 514 CGAGAGATTGGTAGCTCGAGACAAGAGGAGATTCTATCAGAGAGACGAAGCAAACAACAA 573 ||||||||||||||||||||| |||| ||| |||||| | | Sbjct 421 CGAGAGATTGGTAGCTCGAGAAAAGATGAGTTTCTAT--------------------C-A 459 Query 574 GAGGAAGTAAAGAAGCAACCTTTCCCTATGAAACAGATATTAGCAATGGAGATGAGTTGG 633 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 GAGGAAGTAACGAAGCAACCTTTCCCTATGAAACAGATATTAGCAATGGAGATGAGTTGG 519 Query 634 TATACAAGTCATGAAGAAGATAATGGTTCTCTGTGTAATTGTGCTTCTGATATTTACCGT 693 || ||||||| |||||||||||||||||||| | ||||||||||||||||| |||| ||| Sbjct 520 TACACAAGTCCTGAAGAAGATAATGGTTCTCCGAGTAATTGTGCTTCTGATGTTTATCGT 579 Query 694 CTTGGTGTTCTTCTCTTTGAGCTATTCTGCCCTGTCTCCTCAAGAGAAGAGAAGTCAAGA 753 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 580 CTTGGTGTTCTTCTCTTTGAGCTATTTTGCCCTGTCTCCTCAAGAGAAGAGAAGTCAAGA 639 Query 754 ACTATGTCTAGTTTAAGACATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAA 813 |||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| Sbjct 640 ACTATGTCTAGTTTAAGACATCGTGTTCTTCCACCTCAGATATTGCTCAATAGGCCTAAA 699 Query 814 GAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGAGCCTAGCTGTCGACCATCGATGAGT 873 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 700 GAAGCTTCCTTTTGCCTGTGGTTACTGCATCCTGAGCCTAGCTATCGACCATCGATGAGT 759 Query 874 GAGTTGCTACAAAGTGAGTTTATCAACGAACCTAGAGAGAATTTGGAAGAACGTGAAGCT 933 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 760 GAGTTGCTACAAAGTGAGTTTATCAACGAACCTAGAGAGAATTTGGAAGAACGCGAAGCT 819 Query 934 GCAATGGAGCTACGGGATAGAATCGAGGAACAAGAGTTATTACTCGAGTTCTTGTTTCTG 993 || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 820 GCGATGGAGCTACGGGATAGAATCGAGGAACAAGAGTTATTGCTTGAGTTCTTGTTTCTG 879 Query 994 ATTCAACAGAGGAAACAAGAAGCTGCAGACAAATTGCAGGATACAATATCGCTTCTCTCT 1053 ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||| Sbjct 880 ATTCAACAGAGAAAACAAGAAGCTGCAGACAAATTGCGGGATACGATATCGCTTCTTTCT 939 Query 1054 TCTGATATCGATCAAGTCGTAAAGCGACAGTTGGTTTTACAGCAAAAAGGGAGAGATGTC 1113 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 940 TCTGATATTGATCAAGTCGTAAAGCGACAGTTGGTTTTACAGCAAAAAGGGAGTGATGTC 999 Query 1114 CGTTCGTTCTTAGCCTCAAGAAAACGGATTAGACAAGGAGCTGAGACCA-CTGCAGCAGA 1172 |||||||| || |||||||||||||||||||||||||||| ||||| || |||| ||| | Sbjct 1000 CGTTCGTTTTTGGCCTCAAGAAAACGGATTAGACAAGGAGTTGAGA-CAGCTGCGGCAAA 1058 Query 1173 GGAAGAAAATGATGATAATAGCATTGATGAGGAATCTAAGCTTGATGATACTCTAGAAAG 1232 ||||| ||| ||| || | | | |||||||||||||||||||||||||||||||| Sbjct 1059 GGAAG-AAA--ATG---AT-G-A--G--GAGGAATCTAAGCTTGATGATACTCTAGAAAG 1106 Query 1233 TACACTTCTTGAAAGCTCTAGATTAATGAGAAATTTGAAGAAACTGGAATCAGTCTACTT 1292 |||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1107 TACACTACTTGAAAGCTCTCGGTTAATGAGAAATTTGAAGAAACTGGAATCAGTCTACTT 1166 Query 1293 TGCAACACGATACAGACAAATCAAGGCTGCTACTGCTGCTGAAAAACCGTTGGCTAGATA 1352 ||||| || |||||||| || ||||||||| |||||||||||||||||||||||||||| Sbjct 1167 TGCAATGCGGTACAGACAGATTAAGGCTGCTGCTGCTGCTGAAAAACCGTTGGCTAGATA 1226 Query 1353 TTATTCGGCATTGAGTTGTAACGGTAGAAGTTCAGAAAAGAGTTCAAT--G-AG-CC-A- 1406 |||||||||||||||| |||| ||||||||||||||||| |||||||| | || || | Sbjct 1227 TTATTCGGCATTGAGTAGTAATGGTAGAAGTTCAGAAAAAAGTTCAATGAGCAGCCCGAC 1286 Query 1407 AC--C-ATCAAAAGATCCTATCAATGATTCTAGACAAGGCGGGTGGATCGATCCATTCCT 1463 || | | |||||||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 1287 ACAACTACCAAAAGATCCTATCAATGATTCAAGACAGGGCGGTTGGATCGATCCATTCCT 1346 Query 1464 CGAGGGTTTGTGCAAGTATTTGTCTTTTAGTAAGCTAAGAGTGAAAGCAGATTTGAAGCA 1523 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1347 CGAGGGTTTGTGCAAGTATTTATCTTTTAGTAAGCTAAGAGTGAAAGCCGATTTGAAGCA 1406 Query 1524 AGGAGACTTGTTGAACTCGTCTAACCTTGTTTGCGCAATTGGGTTTGATCGTGATGGAGA 1583 ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || Sbjct 1407 AGGAGACTTGTTGAACTCGTCTAACCTTGTTTGTGCAATTGGGTTTGACCGTGATGGGGA 1466 Query 1584 GTTTTTCGCCACGGCAGGCGTCAACAAAAAGATCAAGATATTCGAATGCGAGTCGATAAT 1643 ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1467 GTTTTTCGCTACGGCAGGCGTCAACAAAAAGATTAAGATATTTGAATGCGAGTCGATAAT 1526 Query 1644 AAAAGATGGCCGGGACATTCATTACCCTGTTGTGGAACTTGCTAGCCGGTCTAAGCTTAG 1703 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1527 AAAAGATGGGCGGGACATTCATTACCCGGTTGTGGAACTTGCTAGCCGGTCTAAGCTTAG 1586 Query 1704 TGGTATATGTTGGAACAGTTACATTAAGAGCCAAGTCGCATCAAGTAACTTTGAAGGCGT 1763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1587 TGGTATATGTTGGAACAGTTACATTAAGAGCCAAGTCGCATCAAGTAACTTTGAAGGCGT 1646 Query 1764 GGTTCAAGTTTGGGATGTTGCAAGAAACCAGTTGGTTACAGAGATGAAGGAGCATGAGAA 1823 ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1647 AGTTCAGGTTTGGGATGTTGCAAGAAGCCAGTTGGTTACAGAGATGAAAGAGCATGAGAA 1706 Query 1824 GCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCTAGTGGTAGTGA 1883 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1707 GCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCCAGCGGTAGTGA 1766 Query 1884 TGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGGGGGTTAGTATTGGAACCATCAAGAC 1943 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1767 CGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGGGGGTTAGTATTGGAACCATCAAGAC 1826 Query 1944 AAAGGCAAACATATGTTGTGTTCAGTTTCCATCAGAGACGGGTCGGTCTTTAGCATTTGG 2003 ||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||| Sbjct 1827 AAAGGCAAACATATGTTGTGTCCAGTTTCCGTCAGAGTCGGGTCGGTCTTTAACATTTGG 1886 Query 2004 CTCAGCAGATCACAAAGTTTACTACTATGATCTAAGGAACCCCAAGCTTCCTCTTTGCAC 2063 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 1887 TTCAGCAGATCACAAAGTTTACTACTATGATCTAAGGAGCCCCAAGCTTCCTCTTTGTAC 1946 Query 2064 AATGATTGGTCACCACAAGACCGTGAGTTATGTTAGATTTGTAGATTCATCAACACTTGT 2123 ||||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||| Sbjct 1947 AATGATTGGTCACAACAAGACCGTGAGTTATGTCAGATTTATGGATTCATCAACACTTGT 2006 Query 2124 TTCTTCTTCGACGGATAACACGCTGAAGCTATGGGACTTATCAATGTCTATTTCCGGTAT 2183 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2007 GTCGTCTTCTACGGATAACACGCTGAAGCTATGGGACTTATCAATGTCTATTTCCGGTGT 2066 Query 2184 TAATGAAACGCCTCTTCACTCATTCATGGGACACACTAATGTTAAGAACTTTGTTGGATT 2243 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2067 TAACGAAACACCTCTTCACTCATTCATGGGACACACTAATGTTAAGAACTTTGTTGGATT 2126 Query 2244 ATCAGTCTCTGACGGGTATATAGCAACAGGCTCTGAGACTAACGAGGTTTTTGTGTACCA 2303 ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 2127 ATCGGTCTCTGACGGGTATATAGCAACAGGCTCGGAGACTAATGAGGTTTTTGTGTACCA 2186 Query 2304 CAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTTCAAAACTATAGACCCTGTGTCGGA 2363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2187 CAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTTCAAAACTATAGACCCTGTGTCGGA 2246 Query 2364 ACTCGAAGTAGACGATGCCTCGCAGTTCATATCCTCAGTCTGCTGGCGGGGACAGTCGTC 2423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2247 TCTCGAAGTAGACGATGCCTCGCAGTTCATATCCTCAGTCTGCTGGCGGGGACAGTCCTC 2306 Query 2424 GACCTTAGTTGCTGCAAACTCCACCGGCAATATCAAGATTTTGGAGATGGTATGA 2478 ||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||| Sbjct 2307 GACCTTAGTCGCTGCAAACTCCACTGGCAACATCAAGATTCTGGAGATGGTATGA 2361 > Ahg929326 jgi|Araly1|929326|scaffold_301783.1 Length=2612 Score = 521 bits (282), Expect = 8e-147 Identities = 476/566 (84%), Gaps = 27/566 (5%) Strand=Plus/Plus Query 553 GAGAGACGAA--GCAAACAACAAGAGGAAGTAAAGAAGCAACCTTTCCCTATGAAACAGA 610 |||||||||| | | | ||| |||||||| |||||| |||||||| || |||||||| | Sbjct 567 GAGAGACGAATTG-AGA-AACTAGAGGAAGAAAAGAATCAACCTTTTCCGATGAAACATA 624 Query 611 TATTAGCAATGGAGATGAGTTGGTATACAAGTCATGAAGAAGATAATGGTTC-TCTGTGT 669 ||||||||||||||| |||||||||||||| | |||||| ||| || ||| || || Sbjct 625 TATTAGCAATGGAGACAAGTTGGTATACAAGCCCTGAAGAGGATGTTGATTCTTC-AAGT 683 Query 670 AATTGTGCTTCTGATATTTACCGTCTTGGTGTTCTTCTCTTT-GAGCTATTCTGCCCTGT 728 | ||||||||| ||| |||| || ||||| |||||||| ||| |||||||| |||||||| Sbjct 684 ACTTGTGCTTCAGATGTTTATCGCCTTGGCGTTCTTCT-TTTCGAGCTATTTTGCCCTGT 742 Query 729 CTCC-TCAAGAGAAGAGAAGTCAAGAACTATGTCTAGTTTAAGACATCGTGTTCTTCCCC 787 || |||||||||||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct 743 -ACCTTCAAGAGAAGAGAAATCAAGAACTATGTCTAGTTTAAGACATCGCGTTCTTCCGC 801 Query 788 CTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTT-TGCTTGTGGTTACTGCATCCT 846 |||||||||| ||||| || || ||||||||||| ||| ||||||||||||||||||||| Sbjct 802 CTCAGATATTGCTCAAATGTCCAAAAGAAGCTTC-TTTCTGCTTGTGGTTACTGCATCCT 860 Query 847 GAGCCTAGCTGTCGACCATCGATGAGTGAGTTGCTACAAAGTGAGTTTATCAAC-GAACC 905 ||||| || ||||||||||| |||||||| ||||| ||||| |||||||| ||| ||||| Sbjct 861 GAGCCAAGTTGTCGACCATCAATGAGTGACTTGCTGCAAAGCGAGTTTAT-AACTGAACC 919 Query 906 TAGAGAGAATTTGGAAGAACGTGAAGCTGCAATGGAGCT-ACGGGATAGAATCGAGGAAC 964 ||||| |||||||||||||||||||||||||| |||| | |||| ||||||||||||| Sbjct 920 AAGAGATAATTTGGAAGAACGTGAAGCTGCAATCAAGCTTA-GGGACAGAATCGAGGAAC 978 Query 965 AAGAGTTATTACTCGAGTTCTTGTTTCTGATTCAACAGAGGAAA-CAAGAAGCTGCAG-A 1022 | |||| ||||||||||||||||| |||||||||||||| ||| || ||| |||| | | Sbjct 979 AGGAGTCGTTACTCGAGTTCTTGTTACTGATTCAACAGAG-AAAGCAGGAATCTGC-GTA 1036 Query 1023 CAAATTGCAG-GATACAATAT-CGCTTCTCTCTTCTGATATCGATCAAGTCGTAAAGCGA 1080 | ||||| | ||||| | | | ||||| |||||||| || || ||||| |||||| || Sbjct 1037 TAGATTGC-GTGATACGGT-TGCACTTCTTTCTTCTGACATTGAGCAAGTTGTAAAGAGA 1094 Query 1081 CAGTTGGTTTT-ACAGCAAAAAGGGA 1105 || || |||| | || ||||||||| Sbjct 1095 CAATTAATTTTGA-AG-AAAAAGGGA 1118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101472412680 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5