BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53510.1
Length=2380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474479 jgi|Araly1|474479|fgenesh2_kg.1__4433__AT1G53510.1 3607 0.0
Ahg478884 jgi|Araly1|478884|fgenesh2_kg.3__1585__AT3G14720.1 1483 0.0
Ahg488785 jgi|Araly1|488785|fgenesh2_kg.6__1919__AT5G19010.1 459 6e-128
> Ahg474479 jgi|Araly1|474479|fgenesh2_kg.1__4433__AT1G53510.1
Length=2378
Score = 3607 bits (1953), Expect = 0.0
Identities = 2258/2400 (94%), Gaps = 42/2400 (2%)
Strand=Plus/Plus
Query 1 ATTTTTATTCAAATTTAGAAAAAATATCTCAAATTCGGTATTTTTAAAATCCtctctcg- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTTTATTCAAATTTAGAAAAAATATCTCAAATTCGGTATTTTTAAAATCCTCTCTCGT 60
Query 60 --tcttcttcttcttcgatcgctggatctaggttttgctcttctctgtatcgtcttcttC 117
||||||||||||||||||||||||||||||||||| |||||||| |||| | || |
Sbjct 61 CTTCTTCTTCTTCTTCGATCGCTGGATCTAGGTTTTGTTCTTCTCTCTATC-AC-TC-T- 116
Query 118 A-CAGACTGGGCTTGATTTTGAGTTCTTCTAGTTTTCGGATTCTTAGCAATCTAGGtttt 176
| | | || ||| | || | || | || |||||||||||||||||||
Sbjct 117 ATC-GTCT--TCTTCA--CAGA-CTGGGCTTG-ATT-GGATTCTTAGCAATCTAGG---- 164
Query 177 ttttttttttttACTTTTCGAAAAGCCGATCCAGATTTT-TGATAATTTTGAAGAAGAAG 235
|||||||||| ||||| ||||| |||||||||||||| | | |||||| |||||||
Sbjct 165 GCTTTTTTTTTTCCTTTT-GAAAACCCGATCCAGATTTTATTA-AATTTTTTTGAAGAAG 222
Query 236 ATGCAACAAAATCAAGTGAAGAAGGGCACGAAAGAGATGGAGTTTTTCACAGAGTATGGT 295
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 223 ATGCAACAAAATCAAGTGAAGAAGGGGACGAAAGAGATGGAATTTTTCACAGAGTATGGT 282
Query 296 GATGCAAACAGATATAGGATTCTGGAAGTTATTGGTAAAGGAAGCTATGGAGTTGTGTGT 355
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GATGCTAATAGATATCGGATTCTGGAAGTTATTGGTAAAGGAAGCTATGGAGTTGTGTGT 342
Query 356 GCAGCTATTGATACACATACTGGAGAGAAAGTTGCTATTAAGAAGATTAATGATGTCTTT 415
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 343 GCAGCTATTGATACACATACTGGAGAGAAAGTTGCTATTAAAAAGATTAATGATGTCTTT 402
Query 416 GAACATATTTCTGATGCGCTTCGTATTCTCCGTGAAGTGAAGCTTCTTCGGCTTTTACGG 475
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GAACATATCTCTGATGCGCTTCGTATTCTCCGTGAAGTGAAGCTTCTTCGGCTTTTACGG 462
Query 476 CATCCTGATATTGTGGAGATCAAAAGCATTATGCTGCCTCCTTCTAAGAGAGAGTTTAAA 535
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CATCCAGATATTGTGGAAATCAAAAGCATTATGCTGCCTCCTTCTAAGAGAGAGTTTAAA 522
Query 536 GATATCTATGTTGTGTTTGAGCTCATGGAATCAGATCTTCATCAAGTTATTAAAGCTAAT 595
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GACATTTATGTTGTGTTTGAGCTCATGGAATCAGATCTTCATCAAGTTATTAAAGCTAAT 582
Query 596 GATGATTTGACTCGTGAACACCACCAGTTTTTCCTTTATCAGATGCTTCGTGCTTTAAAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GATGATTTGACTCGTGAACACCACCAGTTTTTCCTTTATCAGATGCTTCGTGCTTTAAAG 642
Query 656 TTCATGCATACAGCTAATGTTTATCACCGTGATCTTAAGCCAAAGAATATACTTGCAAAC 715
||||||||||| |||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 643 TTCATGCATACTGCTAATGTTTATCATCGTGATCTTAAGCCAAAGAATATACTGGCTAAT 702
Query 716 GCAAATTGCAAGTTGAAAGTTTGTGACTTTGGATTGGCTAGAGTAGCGTTTAATGATACT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GCAAATTGCAAGTTGAAAGTTTGTGACTTTGGATTGGCTAGAGTAGCGTTTAATGATACT 762
Query 776 CCTACGACAGTCTTTTGGACGGACTATGTTGCCACAAGATGGTATAGAGCACCTGAGCTC 835
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CCTACAACAGTCTTTTGGACGGACTATGTTGCCACAAGATGGTATAGAGCACCTGAGCTC 822
Query 836 TGTGGATCATTCTTTTCGAAGTACACTCCAGCTATCGACGTTTGGAGCATTGGCTGCATC 895
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 823 TGTGGATCATTCTTTTCGAAGTACACTCCAGCTATCGACATTTGGAGCATTGGCTGCATC 882
Query 896 TTTGCAGAGGTACTAACAGGGAAGCCATTGTTTCCGGGAAAAAGTGTTGTCCATCAGTTG 955
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 883 TTTGCAGAGGTACTTACAGGGAAGCCATTGTTTCCAGGAAAAAGTGTCGTCCATCAGTTG 942
Query 956 GAGTTGATTACTGATCTTCTTGGCACACCAAAATCAGAAACAATTTCTGGAGTTCGTAAT 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 943 GAGTTGATTACTGATCTTCTTGGCACACCAAAATCAGAAACAATTTCTGGAGTTCGAAAT 1002
Query 1016 GATAAAGCTAGAAAATACTTGACTGAAATGAGGAAGAAAAATCCTGTCACCTTCTCGCAA 1075
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1003 GATAAAGCTAGAAAATACTTGACCGAAATGAGGAAGAAAAATCCTGTCACCTTCTCGCAA 1062
Query 1076 AAATTTTCCAAAGCAGATCCATTAGCACTCCGTCTTTTGCAGAGGCTGTTGGCTTTCGAT 1135
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 AAATTCTCCAAAGCAGATCCATTAGCACTCCGTCTTTTGCAGAGGCTGTTGGCTTTCGAT 1122
Query 1136 CCAAAGGATCGACCGACTCCTGCAGAGGCATTAGCTGATCCTTACTTCAAGGGTCTTTCT 1195
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1123 CCAAAGGATCGACCGACTCCTGCAGAGGCATTGGCTGATCCTTACTTCAAGGGTCTTTCT 1182
Query 1196 AAGATTGAAAGAGAACCTTCAAGTCAGCAAATCTCGAAAATGGAGTTTGAATTTGAGAGG 1255
||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1183 AAGGTTGAAAGAGAACCTTCAAGTCAGCCAATCTCGAAGATGGAGTTTGAATTTGAGAGA 1242
Query 1256 CGAAGGTTGACAAAGGACGACATTAGAGAACTAATATACAGAGAAATACTGGAGTACCAT 1315
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1243 CGAAGGTTGACAAAGGACGACATTAGAGAACTAATATACAGAGAAATCCTGGAATACCAT 1302
Query 1316 CCTCAGTTGCTCAAGGACTATATGAGCGGATCTGAGGGGTCTAATTTTGTATATCCTAGC 1375
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 CCTCAGTTGCTCAAGGATTATATGAGCGGATCTGAGGGGTCTAATTTTGTATATCCTAGC 1362
Query 1376 GCCATTGGACATCTTAGACAGCAGTTCACTTACTTAGAGGAAAATAGCAGTAGAAATGGG 1435
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1363 GCCATTGGACATCTTAGACAGCAGTTCACTTACTTAGAGGAAAATAGTAGCAGAAATGGG 1422
Query 1436 CCGGTCATACCTCTCGAGAGGAAACACGCATCACTACCGCGGTCTACGGTTCACTCAACT 1495
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1423 CCGGTCATACCTCTCGAGAGGAAACATGCATCGCTTCCGCGGTCTACGGTTCACTCAACT 1482
Query 1496 GTAGTCCATTCCACCTCGCAACCCAACTTGGGTGCAACAGATAGTAGACGTGTTTCTTTC 1555
||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1483 GTAGTCCATTCCACCACACAACCCAACTTGAGTGCAACAGATAGTAGACGTGTTACTTTC 1542
Query 1556 GAGCCTTCAAAAAATGGAGCTTC-TTCTGCAGGACATCCATCAACTTCCGCGTATCCTAC 1614
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1543 GAGCCTTCAAAAAATGGAG-TTCCTTCTGCAGGACATCCATCAACTTCCGCGTATCCTAC 1601
Query 1615 TAAATCCATCGGACCTCCACCAAGAGTTCCACCATCAGGTAGACCAGGTCGTGTTGTGGA 1674
|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1602 TAAATCTATCGGACCTCCACCAAGGGTTCCACCATCAGGTAGACCAGGTCGAGTTGTGGA 1661
Query 1675 ATCATCTGTATCTTATGAGAATGGCAGGAACCTCAAAGAAGCTTATTTCAGAAGCGCGGT 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 ATCATCTGTATCTTATGAGAATGGCAGGAACCTCAAAGAAGCTTATTTCAGAAGCGCGGT 1721
Query 1735 TTCATCTCCTCATTGCTACTTCCGACCAAACACCATGACAAACCCGGAGAACCGCAACAT 1794
||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |
Sbjct 1722 TTCATCTCCTCATTGCTACTTCCGAGCAAACACCATGACGAACCCAGAGAACCGCAACGT 1781
Query 1795 AGAAGCTTCGTCTTTTCCACCAAAGCCACAAAATCCTGTCCACCAATTCAGT-CCCACTG 1853
||| |||||||||||||| ||||| |||||||||||||||||||||||| || ||||| |
Sbjct 1782 AGAGGCTTCGTCTTTTCCGCCAAAACCACAAAATCCTGTCCACCAATTC-GTTCCCACCG 1840
Query 1854 AGCCACCAGCTGCTACAACTAACCAAGCAGACGTTGAGACTATGAACCACCCAAACCCTT 1913
|||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1841 AGCCGCCAGCTGCTACAACTAACCAAACAGACGCTGAGACTATGAACCACCCAAACCCTT 1900
Query 1914 ACTTTCAACCACAGCTCCCGAAGACAGATCAATTAAACAACAACA-CACA--TATGGCCA 1970
||||||||||||||||||| || | ||||||| |||||||||||| |||| ||||||||
Sbjct 1901 ACTTTCAACCACAGCTCCCCAATATAGATCAACTAAACAACAACAACACACATATGGCCA 1960
Query 1971 TTGATGCTAAGCTGTTGCAGGCACAATCACAGTTTGGTCCAGCAGGAGCTGCAGCGGTTG 2030
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1961 TTGATGCTAAGCTGTTACAGGCACAATCACAGTTTGGTCCAGCTGGAGCTGCAGCAGTTG 2020
Query 2031 CAGTAGCAGCACACCGGAACATAGGCACAATTAGTTACAGCGCAGCATCATAGACAACAC 2090
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2021 CAGTAGCAGCACACCGGAACATAGGCACAATTAGTTACGGCGCAGCATCATAGACAACAC 2080
Query 2091 TTCAGACA-GATCTTTAACCACCACATCTTCCTCCACCAGGT---GATT-CTCT--AGTT 2143
|||||||| | ||||||||| ||||||||||||||| | | | || |||| ||||
Sbjct 2081 TTCAGACAAG-TCTTTAACCTCCACATCTTCCTCCAGGTGATTCTGGTTTCTCTCTAGTT 2139
Query 2144 TTTATGTAAGTATTATT---CAGTCCAGGCTCTGATATGAACTACGTTGCAATGATATAA 2200
||||||||||||||||| ||||| |||||||||| |||||| ||||||||| |||| |
Sbjct 2140 TTTATGTAAGTATTATTATTCAGTC-AGGCTCTGATTTGAACTTCGTTGCAATAATATGA 2198
Query 2201 GAAAGACTTTTATTTAGTTGTAACTCTCCAGAACAAGATCGCCTTGGATTAGTCTGATTG 2260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2199 TAAAGACTTTTATTTAGTTGTAACTCTCCAGAACAAGATCGCCTTGGATTAGTCTGATTG 2258
Query 2261 CGGGTCAGTCCCGGTTATTGTTTCGGTTATCTTGTTGGCTCCATAATCTTTGAATTTGCC 2320
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2259 CGGGTCAGCCCCGGTTATTGTTTCAGTTATCTTGTTGGCTCCATAATCTTTGAATTTTCC 2318
Query 2321 ATAAGCGTAGTTCACCGTAGAGAAGAATATCGTGGTGATTATATACTTCTTAAACTTCTT 2380
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2319 ATAAGCGTAGTTCACAGTAGAGAAGAATATCGTGGTGATTATATACTTCTTAAACTTCTT 2378
> Ahg478884 jgi|Araly1|478884|fgenesh2_kg.3__1585__AT3G14720.1
Length=2355
Score = 1483 bits (803), Expect = 0.0
Identities = 1272/1496 (85%), Gaps = 42/1496 (3%)
Strand=Plus/Plus
Query 230 AAGAAGATGCAACAAAATCAAGTGAAGAAGGGCACGAAAGAGATGGAGTTTTTCACAGAG 289
|||| ||||||||||| ||| | ||||||| || ||||||||||||||||||||| |||
Sbjct 437 AAGAGGATGCAACAAAGTCAGGAGAAGAAGAACATGAAAGAGATGGAGTTTTTCACTGAG 496
Query 290 TATGGTGATGCAAACAGATATAGGATTCTGGAAGTTATTGGTAAAGGAAGCTATGGAGTT 349
||||||||||||||| | ||| ||||||| ||||| ||||| ||||||||||||||||||
Sbjct 497 TATGGTGATGCAAACCGTTATCGGATTCTTGAAGTCATTGGGAAAGGAAGCTATGGAGTT 556
Query 350 GTGTGTGCAGCTATTGATACACATACTGGAGAGAAAGTTGCTATTAAGAAGATTAATGAT 409
|| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 557 GTTTGTGCAGCTATTGATACACATACAGGAGAGAAAGTTGCGATAAAGAAGATTAATGAT 616
Query 410 GTCTTTGAACATATTTCTGATGCGCTTCGTATTCTCCGTGAAGTGAAGCTTCTTCGGCTT 469
|||||||||||| | |||||||| |||||||| |||||||| || |||||||| ||||||
Sbjct 617 GTCTTTGAACATGTCTCTGATGCTCTTCGTATCCTCCGTGAGGTTAAGCTTCTGCGGCTT 676
Query 470 -TTACGGCATCCTGATATTGTGGAGATCAAAAGCATTATGCTGCCTCCTTCTAAGAGAGA 528
||| |||| ||||||||||| || ||||||||||| ||||| || ||||||||||| ||
Sbjct 677 CTTA-GGCACCCTGATATTGTTGAAATCAAAAGCATCATGCTTCCGCCTTCTAAGAGGGA 735
Query 529 GTTTAAAGATATCTATGTTGTGTTTGAGCTCATGGAATCAGATCTTCATCAAGTTATTAA 588
|||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| || ||
Sbjct 736 GTTTAAAGATATTTATGTGGTTTTTGAGCTCATGGAATCGGATCTTCACCAAGTCATCAA 795
Query 589 AGCTAATGATGATTTGACTCGTGAACACCACCAGTTTTTCCTTTATCAGATGCTTCGTGC 648
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 796 AGCTAACGATGATTTGACTCGTGAACACCACCAGTTTTTTCTTTATCAGATGCTTCGTGC 855
Query 649 TTTAAAGT-TCATGCATACAGCTAATGTTTATCACCGTGATCTTAAGCCAAAGAATATAC 707
||| |||| | |||||||||||||||||||| || || |||||||| || ||||| |||
Sbjct 856 TTTGAAGTAT-ATGCATACAGCTAATGTTTACCATCGCGATCTTAAACCGAAGAACATA- 913
Query 708 TTG-CAAACGCAAATTGCAAGTTGAAAGTTTGTGACTTTGGATTGGCTAGAGTAG-CGTT 765
||| |||| ||||| |||||||||||||| |||||||||||| | || ||||| | ||||
Sbjct 914 TTGGCAAATGCAAACTGCAAGTTGAAAGTCTGTGACTTTGGACTAGCAAGAGT-GTCGTT 972
Query 766 TAATGATACTCCTACGACAGTCTTTTGGACGGACTATGTTGCCACAAGATGGTATAGAGC 825
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 973 TAATGATACACCTACAACAGTCTTTTGGACGGATTATGTTGCCACAAGATGGTACAGGGC 1032
Query 826 ACCTGAGCTCTGTGGATCATTCTTTTCGAAGTACACTCCAGCTATCGACGTTTGGAGCAT 885
||| ||||||||||||||||||| ||| ||||| |||||||| || ||| ||||||||||
Sbjct 1033 ACCGGAGCTCTGTGGATCATTCTGTTCTAAGTATACTCCAGCAATTGACATTTGGAGCAT 1092
Query 886 TGGCTGCATCTTTGCAGAGGTACTAACAGGGAAGCCATTGTTTCCGGGAAAAAGTGTTGT 945
|||||||||||| || |||||| ||||||||||||| |||||||| ||||||||||| ||
Sbjct 1093 TGGCTGCATCTTCGCTGAGGTATTAACAGGGAAGCCTTTGTTTCCTGGAAAAAGTGTCGT 1152
Query 946 CCATCAGTTGGAGTTGATTACTGATCTTCTTGGCACACCAAAATCAGAAACAATTTCTGG 1005
||||||||| || |||||||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct 1153 CCATCAGTTAGACTTGATTACCGATCTTCTTGGCACACCAAAATCAGAAACCATTGCTGG 1212
Query 1006 AGTTCGTAATGATAAAG-CTAGAAAATACTTGA-CTGAAATGAGGAAGAAAAATCCTGTC 1063
|||||| ||||| |||| |||||||||| |||| | ||||||||||||||||||| ||||
Sbjct 1213 AGTTCGAAATGA-AAAGGCTAGAAAATATTTGAAC-GAAATGAGGAAGAAAAATCTTGTC 1270
Query 1064 ACCTTCTCGCAAAAATTTTCCAAA-GCAGATCCATTAGCACTCCGTCTTTTGCAGAGGCT 1122
|||| |||||||| ||| || || || ||||| |||||| | || |||||||| || ||
Sbjct 1271 CCCTTTTCGCAAAAGTTT-CCTAACGCCGATCCTTTAGCATTGCGCCTTTTGCAAAGACT 1329
Query 1123 GTTGGCTTTCGATCCAAAGGATCGACCGACTCCTGCAGAGGCATTAGCTGATCCTTACTT 1182
||||||||| |||||||||||| | |||||| |||||||||| | ||||||||||||||
Sbjct 1330 GTTGGCTTTTGATCCAAAGGATAGGCCGACTGCTGCAGAGGCGCTGGCTGATCCTTACTT 1389
Query 1183 CAAGGGTCTTT-CTAAGATTGAAAGAGAACCTTCAAGTCAGCAAATCTCGAAAATGGAGT 1241
|||| || || ||||| |||||||||||||||| |||||| |||||||| ||||| |
Sbjct 1390 TAAGG-TCCTTGCTAAGGTTGAAAGAGAACCTTCTTGTCAGCCGATCTCGAAGATGGAAT 1448
Query 1242 TTGAATTTGAGAGGCGAAGGTTGACAAAGGACGACATTAGAGAACTAATATACAGAGAAA 1301
|||| ||||| || ||| ||||||||||||| || |||||||||||||||||||| || |
Sbjct 1449 TTGAGTTTGAAAGACGACGGTTGACAAAGGATGATATTAGAGAACTAATATACAGGGAGA 1508
Query 1302 TACTGGAGTACCATCCTCAGTTGCTCAAGGACTATATGAGCGGATCTGAGGGGTCTAATT 1361
|||| || |||||||| ||| |||||||||| ||||||| | ||||| || || ||||
Sbjct 1509 TACTAGAATACCATCCGCAGCTGCTCAAGGATTATATGAAC---TCTGAAGGCTCAAATT 1565
Query 1362 TTGTATATCCTAGCGCCATTGGACATCTT-AGACAGCAGTTCACTTACTTAGAGGAAAAT 1420
|| |||||||||| |||||||| ||| || ||| | || || | ||| |||||||||||
Sbjct 1566 TTCTATATCCTAGTGCCATTGGTCAT-TTGAGAAAACAATTTGCATACCTAGAGGAAAAT 1624
Query 1421 AGCAGTAGAAA-TGGGCCGGTCATACCTCTC-GAGAGGAAACACGCATCACTACCGCGGT 1478
|| | | ||| |||||| |||||||||| | || ||||| || || ||||| || || |
Sbjct 1625 AGTGGCA-AAAGTGGGCCAGTCATACCTC-CAGACAGGAAGCATGCTTCACTTCCTCGAT 1682
Query 1479 CTACGGTTCACTCAACTGTAGTCCATTCCACCTCGCAACCCAACTTGGGTGCAACAGATA 1538
|||| |||||||| | || ||| | |||| | | ||||||| ||| ||| |||| |
Sbjct 1683 CTACAGTTCACTCCAGTGCAGTTAACTCCAACGCTCAACCCAGCTTAAACGCATCAGACA 1742
Query 1539 GTAGACGTGTTTCTTTCGAGCCTTCAAAAAATGGAGCTTCTTCTGCAGGACATCCATCAA 1598
|| ||||||||||| |||||||||||| |||||||| | || ||||||||
Sbjct 1743 GTCGACGTGTTTCTATCGAGCCTTCAAGAAATGGAG-T--------AGT---TCCATCAA 1790
Query 1599 CTTCCGCGTATCCTACTAAATCC-ATCGGACCTCCACCAAGAGTTCCACCATCAGGTAGA 1657
|||| || ||| | || ||| || || || |||||||||||||| ||| |||||||||
Sbjct 1791 CTTCAGCATATTCAACAAAA-CCTATAGGGCCTCCACCAAGAGTGCCA---TCAGGTAGA 1846
Query 1658 CCAGGTCGTGTTGTGGAATCATCTGTATCTTATGAGAATGGCAGGAACCTCAAAGA 1713
||||| || ||||||||||||||||| ||||||| |||| ||| ||||| |||||
Sbjct 1847 CCAGGCCGCATTGTGGAATCATCTGTAACTTATGAAAATGACAGAAACCTTAAAGA 1902
Score = 108 bits (58), Expect = 2e-22
Identities = 89/104 (86%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 1953 ACAACACACATATGGCCATTGATGCTAAGCTGTTGCAGGCACAATCACAGTTTGGTCCAG 2012
|||||||| | ||| ||||||||||||||| |||| |||||||| || | |||||| |
Sbjct 2113 ACAACACA-AGGTGGGTATTGATGCTAAGCTGCTGCATGCACAATCCCAATATGGTCCTG 2171
Query 2013 CAGGAGCTGCAGCGGTTGCAGTAGCAGCACACCGGAACATAGGC 2056
| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 2172 CTGGAGCCGCCGCGGTTGCAGTAGCAGCACACCGGAACATTGGC 2215
> Ahg488785 jgi|Araly1|488785|fgenesh2_kg.6__1919__AT5G19010.1
Length=2295
Score = 459 bits (248), Expect = 6e-128
Identities = 813/1076 (76%), Gaps = 77/1076 (7%)
Strand=Plus/Plus
Query 278 TTT-TTCACAGAGTATGGTGATGCAAACAGATATAGGATTCTGGAAGTTATTGGTAAAGG 336
||| ||||| || || ||||| | || |||||| || || ||||||||||||||||||
Sbjct 459 TTTCTTCACGGAATACGGTGAAGGAAGCAGATACAGAATAGAGGAAGTTATTGGTAAAGG 518
Query 337 AAGCTATGGAGTTGTGTG-TGCAGCT-ATTGATACACATACTGGAGAGAAAGTTGCTATT 394
||||||||||||||| || | | ||| | ||||||||||| |||||||||||||| |||
Sbjct 519 AAGCTATGGAGTTGTTTGCT-CGGCTTAC-GATACACATACCGGAGAGAAAGTTGCGATT 576
Query 395 AAGAAGATTAATGATGTCTTT-GAACATATTTCTGATGCG-CTTCGTATTCTCCGTGA-A 451
|||||||| |||||| | ||| || ||| |||| ||||| || || ||||||||||| |
Sbjct 577 AAGAAGATCAATGATAT-TTTCGAGCATGTTTCGGATGCAACT-CGCATTCTCCGTGAGA 634
Query 452 GTGAAGCTTCTTCGG-CTTTTACGGCATCCTGATATTGTGGAGATCAAA-AGCAT-TATG 508
| || ||||| | | || ||||| ||||| || ||||| ||||||||| | ||| | ||
Sbjct 635 -TCAAACTTCT-CAGACTCTTACGCCATCCAGACATTGTTGAGATCAAACA-CATCT-TG 690
Query 509 CTGCCTCCTTCTAAGA-GAGAGTTTAAAGATATCTATGTTGTGTTT-GAGCTCATGGAAT 566
|||| ||||| |||| ||||||||||||| || ||||| || ||| |||||||||||||
Sbjct 691 TTGCCGCCTTC-AAGAAGAGAGTTTAAAGACATTTATGTGGT-TTTCGAGCTCATGGAAT 748
Query 567 CAGATCTT-CATCAAGTTATTAAAGCTAATGATGATTTGACTCGTGAACACCACCAGTTT 625
| ||| || ||||| |||||||| || |||||||||||||||||||| || ||||||||
Sbjct 749 CTGAT-TTGCATCAGGTTATTAAGGCAAATGATGATTTGACTCGTGAGCATTACCAGTTT 807
Query 626 TTCCTTTATCAGATGCTTCGTG-CTTTAAAGT-TCATGCATACAGCTAATGT-TTATCAC 682
|| || |||||| | ||||||| | | || || | || || ||||||||||| || |||
Sbjct 808 TTTCTCTATCAGCTTCTTCGTGGCCTCAA-GTAT-ATACACACAGCTAATGTCTT-TCAT 864
Query 683 CGTGATCTTAAGCCAAAGAATATACTTGCAAACGCAAATTGCAAGTTGAAAGTT-TGTGA 741
|| ||||| || ||||| || ||||| ||||| || ||||||| | || | | |||||
Sbjct 865 CGGGATCTAAAACCAAAAAACATACTGGCAAATGCTGATTGCAAACTCAA-GATCTGTGA 923
Query 742 CTTTGGA-TTGGCTAGAGTAGCGTTTAATGATACTCCTAC-GAC-AGTCTTTTGGACGGA 798
|||||| ||| | ||||| || || |||||||| || || | | | | || ||||| ||
Sbjct 924 TTTTGGACTTG-CAAGAGTCGCATTCAATGATACACCAACCG-CGA-TATTCTGGACTGA 980
Query 799 CTATGTTGCCACAAGATGGTATAGAGCACCTGAGCTCTGTGGATCATTCTTT-TCGAAGT 857
||||| || || ||||||| || || || || || ||||||||||| ||| || ||||
Sbjct 981 TTATGTAGCTACTCGATGGTACAGGGCTCCAGAACTGTGTGGATCATT-TTTCTCAAAGT 1039
Query 858 ACACTCCAGCTATCGACGTTTGGAGCATTGGCTGCATCTTT-GCAGAGGTACT-AACAGG 915
| || || || || || | |||||||| || ||||| ||| |||||| | || ||||||
Sbjct 1040 ATACACCGGCAATAGATATATGGAGCATCGGGTGCAT-TTTCGCAGAGCT-CTTAACAGG 1097
Query 916 GAAGCCAT-TGTTTCC-GGG-AAAAAGTGTTGTCCATCAGTTGGAGT-TGATTACTGATC 971
||| || | | ||||| ||| ||||| ||| |||||||| ||||| | |||| || |||
Sbjct 1098 GAAACC-TCT-TTTCCCGGGGAAAAA-TGTGGTCCATCAATTGGA-TCTGATGACGGATA 1153
Query 972 TTCTTGGCA-CACCAAAAT-CAGAAACAATTTCT-GGAGTTCGTAATGATAAAGCTAGAA 1028
| |||| | | ||| | | ||| | ||| || || | || || |||||| |||
Sbjct 1154 TG-TTGGGAACTCCATC-TGCTGAAGCCATTGGAAGG-GTGAGGAACGAGAAAGCTCGAA 1210
Query 1029 AATACTTGA-CTGAAATGAGGAAGAAAAATCCTGTCACCTTCT-CGCAAAAATTTTCCAA 1086
|||||| | | | | |||||||||| || ||| | |||| | | || || || |||
Sbjct 1211 GATACTTAAGCAGCA-TGAGGAAGAAGAAGCCTATT-CCTTTTTCACATAAGTTC-CCAC 1267
Query 1087 A-GCAGATCCA-TTAGCACTCCGTCTTTT-GCAGAGGCTGTTGGCTTTCGATCCAAAGGA 1143
| || ||||| || || || |||||| | | | || ||||| |||| || || |||||
Sbjct 1268 ATGCTGATCCTCTT-GCTCTTCGTCTTCTAGAAAAGA-TGTTGTCTTTTGAACCCAAGGA 1325
Query 1144 TCGACCGACTCCTGCAGAGGCA-TTAGCTGATCCT-TACTTCAAGGGTCTTT-CTAAGAT 1200
|| || || ||| |||||| || || ||| | ||||||| |||| || ||||| |
Sbjct 1326 CCGGCCTACAGCTGAAGAGGCGCTT-GCAGATG-TATACTTCATGGGT-TTAGCTAAGGT 1382
Query 1201 TGAAAGAGAACCTTCAAG-TCAGCAAATCTCGAAAATGGAGTTTGAATTTGAGAGGCGAA 1259
||||||||| || || | ||| | || | || | || ||||| ||||| ||||| |
Sbjct 1383 TGAAAGAGAGCCCTCT-GCTCAACCTGTCACCAAGTTAGAATTTGAGTTTGAAAGGCGGA 1441
Query 1260 GGTTGACAAAGGACGACATTAGAGAACTAATATACAGAGAAA-TACTGGAGTACCA 1314
|| | ||||| || ||| | |||| || ||||||||||| | |||||||||||
Sbjct 1442 GGATCACAAAAGAAGACGTGCGAGAGCTCATATACAGAGAGTCT-CTGGAGTACCA 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89664436730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5