BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53540.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474482 jgi|Araly1|474482|fgenesh2_kg.1__4436__AT1G53540.1 802 0.0
Ahg937331 jgi|Araly1|937331|scaffold_501522.1 544 4e-154
Ahg485004 jgi|Araly1|485004|fgenesh2_kg.5__996__AT3G46230.1 534 2e-151
Ahg481866 jgi|Araly1|481866|fgenesh2_kg.4__926__AT2G29500.1 219 3e-56
> Ahg474482 jgi|Araly1|474482|fgenesh2_kg.1__4436__AT1G53540.1
Length=613
Score = 802 bits (434), Expect = 0.0
Identities = 533/581 (92%), Gaps = 6/581 (1%)
Strand=Plus/Plus
Query 2 AAACAGAGCAAACGCAAAGAGTAGCAATCACAAGAGGAAGTGAAACGATGTCTCTAATTC 61
||||||||| | ||| || | ||| || ||||||||||||||||||||||||||||||||
Sbjct 1 AAACAGAGCTATCGC-AA-A-TAGTAACCACAAGAGGAAGTGAAACGATGTCTCTAATTC 57
Query 62 CAAGCATCTTCGGAGGAAGAAGAACAAACGTTTTCGATCCGTTCTCGCTGGATGTTTTCG 121
||||||||||||||||||||||||| |||||||||||||| ||||| || || || | |
Sbjct 58 CAAGCATCTTCGGAGGAAGAAGAACGAACGTTTTCGATCCATTCTCTCTAGACGTATGGG 117
Query 122 ATCCGTTCGAAGGTTTCTTGACGCCGTCAGGATTGGCAAACGCACCCGCTATGGATGTGG 181
|||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 118 ATCCATTCGAAGGATTCTTGACGCCGTCAGGATTGGCAAACGCACCGGCTAAGGATGTGG 177
Query 182 CAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAGACACCTGAGGCGCACGTGTTCAAGG 241
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 178 CAGCGTTCACAAACGCTAAAGTTGATTGGAAGGAGACACCTGAGGCGCACGTGTTCAAGG 237
Query 242 CGGATTTACCGGGACTGAGGAAGGAAGAGGTGAAAGTGGAGGTTGAGGATGGCAACATAC 301
|||| |||||||| || | ||| ||||||||||| ||||||||||| ||||||||||| |
Sbjct 238 CGGACTTACCGGGGCTAAAGAAAGAAGAGGTGAAGGTGGAGGTTGAAGATGGCAACATCC 297
Query 302 TTCAGATAAGTGGAGAGAGGAGCAATGAGAATGAAGAGAAGAATGACAAGTGGCACCGTG 361
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTCAGATAAGCGGAGAGAGGAGCAATGAGAATGAAGAGAAGAATGACAAGTGGCACCGTG 357
Query 362 TGGAGCGGTCGAGTGGGAAGTTCACGAGGAGGTTTAGGCTGCCGGAGAATGCTAAGATGG 421
|||||||||| ||||||||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct 358 TGGAGCGGTCTAGTGGGAAGTTCATGAGGAGGTTTAAGCTACCGGAGAATGCTAAGATGG 417
Query 422 AGGAAATCAAAGCCAGTATGGAAAATGGTGTGTTGTCGGTTACCGTGCCCAAGGTGCCAG 481
| |||||||| ||||||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct 418 AAGAAATCAAGGCCAGTATGGAGAATGGTGTGTTGTCTGTTACCGTGCCTAAAGTGCCAG 477
Query 482 AGAAAAAGCCAGAGGTTAAGTCCATTGATATCTCTGGTTAAAGG-GAATTGTTTAAGACC 540
|||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 478 AGAAGAAGCCTGAGGTTAAGTCCATTGATATCTCCGGTTAAAGGTGAAT-GTTTAAGACC 536
Query 541 AAAAA-TGTGTGATGGTAGTGAAATAATTGGTGTGTGATGT 580
||||| |||||||| |||||||||||||||||||||| |||
Sbjct 537 AAAAAATGTGTGATTGTAGTGAAATAATTGGTGTGTGTTGT 577
> Ahg937331 jgi|Araly1|937331|scaffold_501522.1
Length=514
Score = 544 bits (294), Expect = 4e-154
Identities = 431/498 (87%), Gaps = 5/498 (1%)
Strand=Plus/Plus
Query 38 GAAGTGAAACGATGTCTCTAATTCCAAGCATCTTCGGAGGAAGAAGAACAAACGTTTTCG 97
|||||||| | |||||||| ||||| ||||| || ||||| |||| || ||||| ||||
Sbjct 10 GAAGTGAAGCAATGTCTCTGATTCCGAGCATTTTTGGAGGTCGAAGGACCAACGTGTTCG 69
Query 98 ATCCGTTCTCGCTGGATGTTTTCGATCCGTTCGAAGGTTTCTTGACGCCGTCAGGAT-TG 156
|||| || || || || || | ||||| || || || ||||||||| | ||||| | |
Sbjct 70 ATCCATTGTCACTCGACGTATGGGATCCTTTTGAGGGATTCTTGACGTCATCAGG-TGTT 128
Query 157 GCAAACGCACCCGCTATGGATGTGGCAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAG 216
||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 129 GCAAACGCACCGGCTAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAG 188
Query 217 ACACCTGAGGCGCACGTGTTCAAGGCGGATTTACCGGGACTGAGGAAGGAAGAGGTGAAA 276
||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||
Sbjct 189 ACACCTGAGGCGCACGTGTTCAAGGCGGACTTGCCGGGGTTGAAGAAGGAAGAGGTGAAG 248
Query 277 GTGGAGGTTGAGGATGGCAACATACTTCAGATAAGTGGAGAGAGGAGCAATGAGAATGAA 336
||||||||||| |||||||| |||||||||||||| ||||||||||| | ||||| ||||
Sbjct 249 GTGGAGGTTGAAGATGGCAATATACTTCAGATAAGCGGAGAGAGGAGTAGTGAGAGTGAA 308
Query 337 GAGAAGAATGACAAGTGGCACCGTGTGGAGCGGTCGAGTGGGAAGTTCACGAGGAGGTTT 396
||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct 309 GAGAAGAGTGACAAGTGGCACCGTGTGGAGAGGTCAAGTGGGAAGTTCATGAGGAGGTTT 368
Query 397 AGGCTGCCGGAGAATGCTAAGATGGAGGAAATCAAAGCCAGTATGGAAAATGGTGTGTTG 456
||| ||||||||||||| |||||||| ||| | || || |||||||| ||||||||||||
Sbjct 369 AGGTTGCCGGAGAATGCGAAGATGGAAGAAGTGAAGGCGAGTATGGAGAATGGTGTGTTG 428
Query 457 TCGGTTACCGTGCCCAAGGTGCCAGAGAAAAAGCCAGAGGTTAAGTCCATTGATATCTCT 516
|||||||| ||||| || ||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct 429 TCGGTTACGGTGCCGAAAGTGCCGGAGAAGAAGCCTGAGGTCAAGTCCATAGATATCTCC 488
Query 517 GGTTAA-AGG-GAA-TTG 531
|||||| ||| ||| |||
Sbjct 489 GGTTAACAGGAGAAGTTG 506
> Ahg485004 jgi|Araly1|485004|fgenesh2_kg.5__996__AT3G46230.1
Length=621
Score = 534 bits (289), Expect = 2e-151
Identities = 419/483 (87%), Gaps = 4/483 (1%)
Strand=Plus/Plus
Query 44 AAACGATGTCTCTAATTCCAAGCATCTTCGGAGGAAGAAGAACAAACGTTTTCGATCCGT 103
||||||||||||||||||| ||| | || ||||| ||||||||||||| ||||| || |
Sbjct 1 AAACGATGTCTCTAATTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCGACCCAT 60
Query 104 TCTCGCTGGATGTTTTCGATCCGTTCGAAGGTTTCTTGACGCCGTCAGGATTGGCAAACG 163
| || || || || | ||||| |||||||| ||| ||||||| | || ||| ||||||
Sbjct 61 TTTCACTAGACGTATGGGATCCATTCGAAGGATTCATGACGCC-T--GGGTTGACAAACG 117
Query 164 CACCCGCTATGGATGTGGCAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAGACACCTG 223
|||| || | ||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 118 CACCTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAGACACCTG 177
Query 224 AGGCGCACGTGTTCAAGGCGGATTTACCGGGACTGAGGAAGGAAGAGGTGAAAGTGGAGG 283
|||||||||||||||||||||| || ||||| || | ||||||||||||||| |||||||
Sbjct 178 AGGCGCACGTGTTCAAGGCGGACTTGCCGGGGCTTAAGAAGGAAGAGGTGAAGGTGGAGG 237
Query 284 TTGAGGATGGCAACATACTTCAGATAAGTGGAGAGAGGAGCAATGAGAATGAAGAGAAGA 343
|||| ||||| ||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 238 TTGAAGATGGGAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGAAGAGAAGA 297
Query 344 ATGACAAGTGGCACCGTGTGGAGCGGTCGAGTGGGAAGTTCACGAGGAGGTTTAGGCTGC 403
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 298 GTGACAAGTGGCACCGTGTGGAGAGGTCGAGTGGGAAGTTCATTAGGAGGTTTAGATTGC 357
Query 404 CGGAGAATGCTAAGATGGAGGAAATCAAAGCCAGTATGGAAAATGGTGTGTTGTCGGTTA 463
|||||||||| ||| |||||||| | || || |||||||| || ||||||||||| ||||
Sbjct 358 CGGAGAATGCGAAGGTGGAGGAAGTGAAGGCGAGTATGGAGAACGGTGTGTTGTCCGTTA 417
Query 464 CCGTGCCCAAGGTGCCAGAGAAAAAGCCAGAGGTTAAGTCCATTGATATCTCTGGTTAA- 522
| ||||| || ||||| |||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 418 CGGTGCCGAAAGTGCCGGAGAGTAAGCCCGAGGTCAAGTCCATTGATATCTCTGGTTAAG 477
Query 523 AGG 525
|||
Sbjct 478 AGG 480
> Ahg481866 jgi|Araly1|481866|fgenesh2_kg.4__926__AT2G29500.1
Length=589
Score = 219 bits (118), Expect = 3e-56
Identities = 260/327 (80%), Gaps = 16/327 (5%)
Strand=Plus/Plus
Query 202 GTGGATTGGAGGGAGACACCTGAGGCGCACGTGTTCAAGGCGGATTTACCGGGACTGAGG 261
||||| ||||| ||||| || ||||||||||||||||| |||||||| |||||| ||| |
Sbjct 148 GTGGACTGGAGAGAGACGCCGGAGGCGCACGTGTTCAAAGCGGATTTGCCGGGATTGAAG 207
Query 262 AAGGAAGAGGTGAAAGTGGAGGTTGAGGATGGCAACATACTT-CAGATAAGTGGAGAGAG 320
|| ||||| |||||||| ||| ||||||| | | | || |||| || |||||||
Sbjct 208 AAAGAAGAAGTGAAAGTTGAGATTGAGGAAGATAGTGT-TTTGAAGATCAGCGGAGAGA- 265
Query 321 GAGCA-AT-GAGAATGAAGAGAAGAATGACAAGTGGCACCGTGTGGAGCGGTCGAGTGGG 378
|| || | ||||| ||||| |||||||||| |||||||||||||||| | |||||| ||
Sbjct 266 GA-CACGTGGAGAAAGAAGATAAGAATGACACGTGGCACCGTGTGGAGAGATCGAGT-GG 323
Query 379 A-AGTTCACGAGGAGGTTTAGGCTGCCGGAGAATGCT-AAGATGGAGGAAATCAAAGCCA 436
| |||| |||||||||||||||||||||||||||| | |||||||| || | || ||
Sbjct 324 ACAGTTTACGAGGAGGTTTAGGCTGCCGGAGAATG-TGAAGATGGATCAAGTTAAGGCT- 381
Query 437 G-TATGGAAAATGGTGTGTTGTCGGTTACCGTGCCCAAGG-TGCCAGAGAAA-AAGCCAG 493
| |||||| |||||||||||| | || || ||||| |||| || ||| || ||| | |
Sbjct 382 GCTATGGAGAATGGTGTGTTGACTGTGACGGTGCCTAAGGCTG--AGACCAAGAAGGCTG 439
Query 494 AGGTTAAGTCCATTGATATCTCTGGTT 520
| || ||||| ||| | ||| ||||||
Sbjct 440 ATGTGAAGTCTATTCAGATCACTGGTT 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5