BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53590.1
Length=2635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314675 jgi|Araly1|314675|fgenesh1_pm.C_scaffold_1003455 1755 0.0
Ahg478877 jgi|Araly1|478877|fgenesh2_kg.3__1578__AT3G14590.1 1463 0.0
> Ahg314675 jgi|Araly1|314675|fgenesh1_pm.C_scaffold_1003455
Length=2196
Score = 1755 bits (950), Expect = 0.0
Identities = 1135/1217 (93%), Gaps = 42/1217 (3%)
Strand=Plus/Plus
Query 242 ATGGAGTCTTCTTTAATTCATCATATCATCATTGTGTTGCTGTTACTCTGGTTCATCTCT 301
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAGTCTTCGTTAATTCATCATATTATCATTGTGTTGTTGTTACTCTGGTTCATCTCT 60
Query 302 TCCTTGAATCGATCCCACGCCTTTTTCTATTTCCTCGCTCTCATTTATCTCTACCTGGTT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCTTGAATCGATCCCACGCCTTTTTCTATTTCCTCGCTCTCATTTATCTCTACCTGGTT 120
Query 362 CACGAACGGTATGTGATGAGATTGAAGAGAAAATTGCAGTTCGAAGAGAGGAAGCAAGCA 421
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 121 CACGAACGGTATGTGATGAGATTGAAGAGAACATTGCAGTTTGAAGAGAGGAAGCAAGCT 180
Query 422 AATCAGAGAAGGGTTCTATCTGATTCTGAATCTGTGAGATGGATGAATTATGCTGTGGAG 481
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTCAGAGACGGGTTCTATCTGATTCTGAATCTGTGAGATGGATGAATTATGCTGTGGAG 240
Query 482 AAGATATGGCCAATATGCATGGAACAGATAGCGTCTCAGAAGATTCTGGGTCCAATCATA 541
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 241 AAGATATGGCCTATATGCATGGAACAGATTGCCTCTCAGAAGATTCTGGGTCCAATAATA 300
Query 542 CCTTGGTTCTTGGAAAAATATAGACCTTGGACAGCGAAAAAAGCTGTGATACAGCACCTT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTTGGTTCTTGGAAAAATATAGACCTTGGACAGCGAAAAAAGCTGTGATACAGCACCTT 360
Query 602 TACATGGGAAGAAACCCACCTCTGTTGACTGATATTAGGGTCCTTCGTCAATCTACGGGT 661
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 361 TACATGGGAAGAAACCCACCTCTGTTGACTCATATTAGGGTCCTTCGCCAATCTACGGGT 420
Query 662 GATGATCACTTGGTACTGGAACTTGGTATGAATTTTCTCGCAGCAGATGATATGAGTGCA 721
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GATGATCACTTGGTATTGGAACTTGGAATGAATTTTCTCGCAGCAGATGATATGAGTGCA 480
Query 722 ATACTTGCTGTGAAATTAAGGAAAAGGCTTGGTTTTGGGATGTGGACAAAGTTGCATTTG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATACTTGCTGTGAAATTAAGGAAAAGGCTTGGTTTTGGGATGTGGACAAAGTTGCATTTG 540
Query 782 ACAGGAATGCACGTGGAAGGAAAGGTGTTGATCGGAGTGAAGTTCCTTCGTCGGTGGCCT 841
|| || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 541 ACGGGGATGCACGTGGAAGGAAAGGTGCTAATCGGAGTGAAGTTCCTTCGTCGGTGGCCT 600
Query 842 TTCTTGGGGCGTTTACGTGTGTGTTTTGCAGAGCCTCCATATTTCCAGATGACTGTTAAA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCTTGGGGCGTTTACGTGTGTGTTTTGCAGAGCCTCCATATTTCCAGATGACTGTTAAA 660
Query 902 CCAATCTTCACTCATGGGCTTGATGTTGCAGTACTCCCAGGTATCGCAGGATGGCTAGAT 961
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 661 CCAATCTTCACTCACGGGCTTGATGTTGCTGTACTTCCAGGTATCGCAGGATGGCTAGAT 720
Query 962 AAACTTCTTTCTATAGCATTTGAACAGACCCTTGTTCAGCCAAATATGCTTGTTGTTGAC 1021
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAACTTCTTTCTATCGCATTTGAACAGACCCTTGTTCAGCCAAATATGCTTGTTGTTGAC 780
Query 1022 ATGGAGAAATTTGTTAGCCCAACGTCAGAAAATTGGTTCTTTGTTGATGAGAAAGAACCG 1081
||||||||||||||||||| || | | | | | || || |||||
Sbjct 781 ATGGAGAAATTTGTTAGCC-AA----A-A---T-----C-------A-GA-AA-GAACCA 816
Query 1082 GTTGCACACGTCTTAGTTGAAGTCTTTGAAGCATCAGATCTTAAACCATCTGATCTAAAT 1141
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 817 GTTGCACACGTCTTAGTTGAAGTCTTTGAAGCATTAGATGTTAAACCATCTGATCTAAAT 876
Query 1142 GGTTTGGCTGATCCTTATGTGAAAGGGAAACTTGGTGCTTACCGATTCAAAACCAAGATA 1201
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 877 GGTTTGGCTGACCCTTATGTGAAAGGGAAACTTGGTGCTTACCGATTCAAAACCAAGACA 936
Query 1202 CAGAAGAAAACATTGTCCCCGAAATGGCACGAAGAGTTTAAGATACCAATCTTTACATGG 1261
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 937 CAGAAGAAAACATTGTCCCCAAAATGGCAAGAAGAGTTTAAGATACCAATCTTTACATGG 996
Query 1262 GATTCTCCTAGTATACTTAACATTGAAGTTGGAGACAAAGACCGATTTGTGGATGATACC 1321
|| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 997 GACTCTCCAAGTATACTTAACATTGAAGTTCGAGACAAAGACCGATTTGTGGATGATACC 1056
Query 1322 CTTGG-T--G------AA---T--G--T-T-CAGTGAATATTGAAGAGTTTAGAGGCGGC 1363
||||| | | || | | | | |||||||||||| ||||||||||||||||
Sbjct 1057 CTTGGGTTTGTTCCTGAACCCTCTGAATGTTCAGTGAATATTGGAGAGTTTAGAGGCGGC 1116
Query 1364 CAAAGAAACGATATGTGGTTGTCTCTTCAGAACATCAAAATGGGAAGGCTTCATCTTGCT 1423
|||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 1117 CAAAGAAACGATATGTGGTTACCTCTTCAGGACATCAAAATGGGAAGGCTGCATCTTGCT 1176
Query 1424 ATAACAGTAATTGAGGA 1440
||||| |||||||||||
Sbjct 1177 ATAACTGTAATTGAGGA 1193
Score = 1585 bits (858), Expect = 0.0
Identities = 961/1011 (95%), Gaps = 5/1011 (0%)
Strand=Plus/Plus
Query 1488 AGGAAGACATACAGACTTCTTTTGCTTCTGATACTACAAATTTAGGCTCTTTCTCGTCGG 1547
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1190 AGGAAGACATACAGACTTCTTTTGCTTCTGATACTACAAATCTAGGCTCTTTCTCGTCGG 1249
Query 1548 ACAAATCTCCAAGTGTTGTGGATAACTTTGAGCCAATAAAAATTGACGGGCAAGAAGAGA 1607
||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1250 ACAAAGCTCCAAGTGTTGTGGATAACTTTGAGCCAATAACCATTGAAGGGCAAGAAGAGA 1309
Query 1608 CTGCAATATGGGTTCAAAAACCGGGAGCAGAAGTATCACAGATTTGGGAACCAAGAAAAG 1667
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 CTGGAATTTGGGTTCAAAAACCGGGAGCAGAAGTATCACAGATTTGGGAACCAAGAAAAG 1369
Query 1668 GTAAGAGTAGACGTCTTGATAGCCAAATACAAAGAACCCCTAATGATGAATCATTGAGCA 1727
||||||||||||||||||||| |||||||||||||| ||||||||||| |||| | | ||
Sbjct 1370 GTAAGAGTAGACGTCTTGATAACCAAATACAAAGAAACCCTAATGATGGATCACTCAACA 1429
Query 1728 ATGGAAGCAGCAGCACTGACGACAATCAAGAGGGATCAAAGAATCCAATGAAGTCTGTTG 1787
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1430 GTGGAAGCAGCAGCACCGACGACAATCAAGAGGGATCAAAGAATCCAATGAAGTCGGTTG 1489
Query 1788 GTAGAGGATTGAGGAAAATCGGGTCAATGTTTCACAGGAATGTCAAAAAGGAAGAATTTT 1847
||||||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 1490 GTAGAGGATTGAGAAAAATCGGGTCAGTGTTTCACAGGCATGGCAAAAAGGAAGAATTTT 1549
Query 1848 TAATAGGAAGCATTGAAGAAGAGTCACAGTCTCAGTCTCCTCGGATCAATCTGAAGGCAG 1907
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1550 TAATAGGAAGCATTGAAGAAGAG---CAGTCTCAGTCTCCTCGGATCAATCTGAAGGCAG 1606
Query 1908 TAAACCAAAAGGATGTTGGACTTAACTTCATCGTTGATGACAATCTCTCGGGTCCACTTT 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 TAAACCAAAAGGATGTTGGACTTAACTTCATCGTTGATGACAATCTCTCGGGTCCACTTT 1666
Query 1968 CAGGCAAGAGTTTAGATGGTGAGAGTTTGGATGCAGAGGAAAATTCAGGTAAAGGCCATA 2027
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1667 CAGGCAAGAGTTTAGATTGTGAGAGTTTGGATGCAGAGGAACATTCAGGTAAAGGCCATA 1726
Query 2028 TGAAGGATGTGGCAAAGAGTTTTCTGAAACAAGCTGAGAAATCTGCAAAACAGATA-AAG 2086
||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 1727 TGAAGGATGTGGCAAAGAGCTTTCTAAAACAAGCTGAGAAATCTGCAAAACA-ATTTAAG 1785
Query 2087 CATGCGTTTTCCCGTAAAGGATCCATGAAACCAAGAGATGGGCATAAAGAAATCGTTCCT 2146
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1786 CATGCGTTTTCGCGTAAAGGATCCATGAAACCAAGAGATGGGCAAAAAGAAATCGTTCCT 1845
Query 2147 GAATCTGATTCTGGAACTGATTCTGAATCTTCTGATGATGATGATGCGTTTACCTGTGTA 2206
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1846 GAATCTGATTCTGGATCTGATTCTGAATCTTCTGATGATGATGATTCGTTTACCTGTGTA 1905
Query 2207 AAGAACCTGGCAACAGAACCAGGAAAACTTACACGCGATGGGAATATTGAAAGAACAGGA 2266
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1906 AAGAACCTGGCAACAGAAACAGGAAAACTTACACGCGATGGGAATATTGTTAGAACAGGA 1965
Query 2267 GATGATGATCATGTAGATTCAACAACATTAGCAACCGCTAAGGAAGATTCAAGTGGTGAT 2326
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1966 GATGAAGATCATGTAGATTCAACAACATTAGCAAACGCTAAGGAAGATTCAAGTGGTGAT 2025
Query 2327 ATATTAGAGGATTCGACAGATGTTGAAGCTAAAGAGGAGAAATTAAAGGAAGCAGCAGAG 2386
|| |||| ||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 2026 ATGGCAGAGAATTCGACAGATGTTGAAGCTAAAGATGAGAAACTAGAGGAAGCAGCAGAG 2085
Query 2387 TCAGAAACTAGAGATATGGACACCGCCATGAACATCAAAACTGAAGATGAGAAAGGAGAC 2446
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2086 TCAGAAACTAGAGATATTGACACCGCCATGAACATCAAAACTGAAGATGAGAAAGGAGAG 2145
Query 2447 ACGCTTAAAAATATCGAAGAAGGGGAAGAAAAGGAATCATCTTCAAAGTAA 2497
||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 2146 ACGCTTAAAAATATCCAAGAAGGGGAAGAAAAGGAATCATCTTCAAACTAA 2196
> Ahg478877 jgi|Araly1|478877|fgenesh2_kg.3__1578__AT3G14590.1
Length=2615
Score = 1463 bits (792), Expect = 0.0
Identities = 1492/1821 (82%), Gaps = 83/1821 (5%)
Strand=Plus/Plus
Query 358 GGTTCACGAACGGTATGTGATGAGATTGAAG-AGAAAATTGCAGTTCGAAGAGAGGAAGC 416
|||||| ||||| ||||||||||| |||| | || ||| | ||||| |||||||||||||
Sbjct 399 GGTTCATGAACGCTATGTGATGAGGTTGAGGAAG-AAACTACAGTTTGAAGAGAGGAAGC 457
Query 417 AAGCAAATCAGAGAAGGGTTCTATCTGATTCTGAATCTGTGAGATGGATGAATTATGCTG 476
|||| || ||||||||||||||||||||||||||||| ||||| ||| | ||| |||||
Sbjct 458 AAGCTAACCAGAGAAGGGTTCTATCTGATTCTGAATCGGTGAGGTGGTTAAATCATGCTA 517
Query 477 TGGAGAAGATATGGCCAATATGCATGGAACAGATAGCGTCTCAGAAGATTCTGGGTCCAA 536
|||||||||||||||| || || ||||||||||| || |||||||||||||| |||| |
Sbjct 518 TGGAGAAGATATGGCCTATTTGTATGGAACAGATTGCATCTCAGAAGATTCTACGTCCGA 577
Query 537 TCATACCTTGGTTCTTGGAAAAATATAGACCTTGGACAGCGAAAAAAGCTGTGATACAGC 596
||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
Sbjct 578 TCATACCTTGGTTCTTGGACAAGTATAGACCTTGGACTGCGAAAAAAGCTGTGATACAAC 637
Query 597 ACCTTTACATGGGAAGAAACCCACCTCTGTTGACTGATATTAGGGTCCTTCGTCAATCTA 656
|||| || ||||||||||||| ||| ||||||| ||||| ||||| ||||| |||||||
Sbjct 638 ACCTCTATTTGGGAAGAAACCCGCCTTTGTTGACAGATATAAGGGTGCTTCGGCAATCTA 697
Query 657 CGGGTGATGATCACTTGGTACTGGAACTTGGTATGAATTTTCTCGCAGCAGATGATATGA 716
||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||||||||
Sbjct 698 CGGGTGATGATCACTTGGTGCTGGAACTTGGAATGAATTTCCTCACAGCAGATGATATGA 757
Query 717 GTGCAATACTTGCTGTGAAATTAAGGAAAAGGCTTGGTTTTGGGATGTGGACAAAGTTGC 776
| |||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct 758 GCGCAATACTCGCTGTGAAGTTAAGAAAAAGACTTGGGTTTGGAATGTGGACAAAGTTGC 817
Query 777 ATTTGACAGGAATGCACGTGGAAGGAAAGGTGTTGATCGGAGTGAAGTTCCTTCGTCGGT 836
|||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |
Sbjct 818 ATTTGACAGGAATGCATGTTGAAGGAAAGGTGTTGATTGGAGTGAAGTTCCTTCGTCGAT 877
Query 837 GGCCTTT-CTTGGGGCGTTTACGTGTGTGTTTTGCAGAGCCTCCATATTTCCAGATGACT 895
||||||| || ||||||||||||||| |||||||||||||| || |||||||| ||||||
Sbjct 878 GGCCTTTTCT-GGGGCGTTTACGTGTTTGTTTTGCAGAGCCACCTTATTTCCAAATGACT 936
Query 896 GTTAAACCAATCTTC-ACTCATGGGCTTGATGTTGCAGTACTCCCAGGTATCGCAGGATG 954
||||||||||| | | |||||||| ||||||||||| | || ||||| || ||||||||
Sbjct 937 GTTAAACCAAT-TACCACTCATGGACTTGATGTTGCTGCGCTTCCAGGAATTGCAGGATG 995
Query 955 GCTAGATAAACTTCTT-TCTATAGCATTTGAACAGACCCTTGTTCAGCCAAATATGCTTG 1013
||||||||||||| || ||| | |||||||| || || |||||| ||||||||||||| |
Sbjct 996 GCTAGATAAACTT-TTGTCTGTCGCATTTGAGCAAACTCTTGTTGAGCCAAATATGCTGG 1054
Query 1014 TTGTTGACATGGAGAAATTTGTTAGCCCA-ACGTCAG-A-AAA-TTGGTTCTTTGTTGAT 1069
| ||||| ||||||||||||||||||||| | | ||| | ||| ||||||||||||||||
Sbjct 1055 TAGTTGATATGGAGAAATTTGTTAGCCCAGA-GCCAGGAGAAAATTGGTTCTTTGTTGAT 1113
Query 1070 GAGAAAGAACCGGTTGCACACG-TCTTAGTTGAAGTCTTTGAAGCATCAGATCTTAAACC 1128
||||||||||| || ||||||| |||| ||||||||| |||||||||| ||| |||||||
Sbjct 1114 GAGAAAGAACCAGTAGCACACGCTCTT-GTTGAAGTCGTTGAAGCATCTGATGTTAAACC 1172
Query 1129 ATCTGATCTAAATGGTTTGGCTGATCCTTATGTGAAAGGGAAACTTGGTGCTTACCGATT 1188
||| |||||||| ||||| |||||||| |||||||||||| | ||||| |||||| ||||
Sbjct 1173 ATCAGATCTAAACGGTTTAGCTGATCCATATGTGAAAGGGCAGCTTGGCGCTTACAGATT 1232
Query 1189 CAAAACCAAGATACAGAAG-AAAACATTGTCCCCGAAATGGCACGAAGAGTTTAAGATAC 1247
|||||||||||||| | | ||||| ||| | || |||||||| |||||||| |||||||
Sbjct 1233 CAAAACCAAGATACT-ATGGAAAACGTTGGCTCCTAAATGGCAAGAAGAGTTCAAGATAC 1291
Query 1248 CAATCTTT-ACATGGGATTCTCCTAGTATACTTAACATTGAAGTTGGAGACAAAGACCGA 1306
|||| || |||||||| || || | ||| ||||||||||||||| |||||||||||||
Sbjct 1292 CAAT-TTGCACATGGGACTCCCCAAATATCCTTAACATTGAAGTTCAAGACAAAGACCGA 1350
Query 1307 TTTGTGGATGATACCCTTGGTGAATGTTCAGTGAATATTGAAGAGTTTAGAGGCGGCCAA 1366
||| ||||| | ||||| || ||||||||||| |||| ||||||| |||||||||||
Sbjct 1351 TTTACCGATGACAGTCTTGGCGATTGTTCAGTGAACATTGCAGAGTTTCGAGGCGGCCAA 1410
Query 1367 AGAAACGATATGTGGTTGTCTCTTCAGAACATCAAAATGGGAAGGCTTCATCTTGCTATA 1426
||||| |||||||||||| ||||||||||||| |||||||| ||||| || |||||||||
Sbjct 1411 AGAAATGATATGTGGTTGCCTCTTCAGAACATTAAAATGGGGAGGCTGCACCTTGCTATA 1470
Query 1427 AC-AGTAATTGAGGACAATGCGAAGTCGAGTGATGATCCCTTaaaaaaaGCGA-AACTAA 1484
|| | || |||||||| | || |||| || |||||||| || || || || || |||
Sbjct 1471 ACCA-TACTTGAGGACGAGGCAAAGTTGAACGATGATCCGTTTGAAGGAGTGACAA-TAA 1528
Query 1485 ACAAGGAAGACATACAGACTTCTTTTGCTTCTGATACTACAAATTTAGGCTCTTTCTCGT 1544
||||||||||| | ||||||||||||| || ||||| | ||| || ||||| |
Sbjct 1529 GTAAGGAAGACATGTGGGCTTCTTTTGCTTCCGACGTTACAAGTAAAGGTTCCTTCTCAT 1588
Query 1545 C-G-G--A-C--A-AA-TCTCCAAGTGTTG-TGGATAACTTTG-AGCCAATAAAAATTGA 1593
| | | | | | || |||||||| ||| || |||| | || | ||||| || || ||
Sbjct 1589 CAGTGGTATCTGACAAGTCTCCAAGGGTTCCTG-ATAA-TATGGAACCAATTAACATCGA 1646
Query 1594 CGGGCAAGAAGAGACTGCAATATGGGTTCAAAAACCGGGAGCAGAAGTATCACAGATTTG 1653
|| ||||||||||||| ||| ||||| || |||| ||| | ||||| |||||||||||
Sbjct 1647 AGGACAAGAAGAGACTGGAATCTGGGTACATCAACCAGGAACTGAAGTCTCACAGATTTG 1706
Query 1654 GGAACCAAGAAAAGGTAAGAGTAGACGTCTTGATAGCCAAATACAAAGAAC---C----- 1705
||||||||||||||| |||||| || | ||||||| | |||||| | | |
Sbjct 1707 GGAACCAAGAAAAGGCAAGAGTCGATGCCTTGATAACGAAATACGTGGTGCTGGCAGTGT 1766
Query 1706 CC-TAATGA-TGAATC-AT-T-G---AGCAATGGAAGCAGCAGCACTGACGACAATCAAG 1757
|| | | || ||| | | | | ||| | ||||||||||||||| || ||||| |
Sbjct 1767 CCGTTCC-ACTGCATCTACGTCGCCCAACAAAGAAAGCAGCAGCACTGATGAAAATCAGG 1825
Query 1758 A-GGGATCAAAGAATCCAATGAAGTCTGTTGGTAGAGGATTGAGGAAAATCGGGTCAATG 1816
| |||| | || | | | |||||||||||||| | ||||||| ||||||||| | | ||
Sbjct 1826 AAGGGA--AGAGCA-CGA-TGAAGTCTGTTGGTCGGGGATTGAAGAAAATCGGTTTAGTG 1881
Query 1817 TTTCACAGGAATGTCAAAAAGGAAGAATTTT-TAATA--GG-AAGCATTGAAGAAGAGTC 1872
|| || | ||||| ||||||||||||| | | ||| || || ||||||||| || |
Sbjct 1882 TTCCATAAGAATGGAAAAAAGGAAGAATGTCATCATAAAGGGAA-CATTGAAGAGGA-T- 1938
Query 1873 ACAGTCTCAG-TCTCCTCGGATCAATCTGAAGGCAGT-AAACCAAAAGGATGTTGGACTT 1930
| || || ||||||||||| ||| ||||||| || ||| |||||||||||||| ||
Sbjct 1939 A---TC--AGGTCTCCTCGGATTAATTTGAAGGC-GTTAAATCAAAAGGATGTTGGGGTT 1992
Query 1931 AACTTCATCGTTGATGACAATCTCTCGGGTCCACTTTCAGGCAAGA-GTTTAGATGGTGA 1989
|| ||||||||||| |||| || ||||| || || |||| |||| || | | |||||
Sbjct 1993 AAGTTCATCGTTGAAGACAGGCTATCGGGGCCTCTCACAGG-AAGAAGTCCAAAAGGTGA 2051
Query 1990 GAG-TTTGGATGCAGAGGAAAATTCAGGTA-AAGGC-CATATGAAGGATGTGGCAAAGAG 2046
||| ||||| | | || || | | ||| | |||| || ||||||||||| ||||||||
Sbjct 2052 GAGCTTTGGTT-CTGAAGACAGT-CAGC-ACAAGGGACACATGAAGGATGTTGCAAAGAG 2108
Query 2047 TTTTCTGAAACAAGCTGAGAAA-TCTGCAAAACAGATAAAGCATGCGTTTTCCCGTAAAG 2105
|||| ||||| ||||| ||| ||||||| ||| | |||||||| ||||| |||||||
Sbjct 2109 CATTCTAAAACATGCTGA-AAAGTCTGCAAGACACCTTAAGCATGCTTTTTCGCGTAAAG 2167
Query 2106 GATCCATGAAACCAAGAGATG 2126
|||| | |||| |||||||||
Sbjct 2168 GATCAAGGAAATCAAGAGATG 2188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99377449205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5