BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53670.1
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923930 jgi|Araly1|923930|scaffold_105211.1 992 0.0
> Ahg923930 jgi|Araly1|923930|scaffold_105211.1
Length=647
Score = 992 bits (537), Expect = 0.0
Identities = 613/650 (94%), Gaps = 3/650 (0%)
Strand=Plus/Plus
Query 27 TTATAAGCTGTGATTGTGTGATGGCTTCTTCTACTAGATTAACTATTATACAATCAAGCT 86
||||||| ||||||||||| ||||||||||||| ||| ||||| | ||||||||||| |
Sbjct 1 TTATAAGGTGTGATTGTGTAATGGCTTCTTCTAGTAGTTTAAC-A--ATACAATCAAGTT 57
Query 87 TCGTCTCCGCAAGAACAAGACTCAATTACGTCTCCAAGACAAATCATTCTGGGTTCGCTT 146
||||||| ||||||||||| ||||||| | |||||||| |||||| |||||| |||||||
Sbjct 58 TCGTCTCTGCAAGAACAAGCCTCAATTCCTTCTCCAAGCCAAATCTTTCTGGCTTCGCTT 117
Query 147 GTCGTTCTCTTTCAAAACCCAGAAACTTGAGTCTCTCTGTTTATTCTATGGGTTCTTCTA 206
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 118 GTCGTTCTCTTTCAAAACCCAGAAACTTGAGTCTCTTTGTTTCTTCTATGGGTTCTTCTA 177
Query 207 GTTCTTCTCCGAAACCAGACAACGTCCAAGAGGCTGAGAAGAATGAGTTTGCTTCTCTAA 266
||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 178 GTTCTTCTCAGAAACCAGACAACGTCCAAGAGGCTGAGAAGAGTGACTATGCTTCTCTAA 237
Query 267 GTGAAAATGAATGGAAGAAACGGCTAACACCAGAACAGTACTACATCACTAGACAGAAGG 326
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 238 GTGAAAATGAATGGAAGAAAAGGCTAACACCAGAACAGTATTACATCACTAGACAGAAGG 297
Query 327 GCACAGAGAGAGCTTTCACTGGGGAGTATTGGAACTCAAAGACCCCTGGAGTATATAATT 386
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 298 GGACAGAGAGAGCTTTCACTGGGGAGTATTGGAACTCAAAGACCCCAGGAGTATACAATT 357
Query 387 GTGTATGTTGCGACACACCTCTATTTGATTCATCAACAAAGTTTGATAGTGGAACAGGGT 446
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GCCTATGTTGCGACACGCCTCTATTTGATTCATCAACAAAGTTTGATAGTGGAACAGGGT 417
Query 447 GGCCATCTTACTACCAACCAATTGGAAACAATGTGAAGACAAAGCTAGACCTCTCTATCA 506
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGCCATCTTATTACAAACCAATTGGAAACAATGTGAAGACAAAGCTAGACCTCTCTATCA 477
Query 507 TCTTCATGCCTAGACAAGAAGTTGTCTGTGCTGTTTGTAACGCCCATCTTGGTCATGTCT 566
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 478 TCTTCATGCCTAGACAAGAAGTTGTCTGTGCTGTTTGTAATGCCCATCTTGGCCATGTCT 537
Query 567 TTGACGACGGTCCACGCCCAACCGGAAAACGATATTGCCTCAACAGTGCTGCTCTGAAAC 626
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 538 TTGATGACGGTCCACGCCCAACGGGAAAACGATATTGTCTCAACAGTGCTGCTCTGAAAC 597
Query 627 TTAACGCATTGGAGAAAACAAGAGATTGAGAGTTTCTGGTACAAGGATTT 676
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 TTAACGCATTGGAGAAAACAAGAGATTGAGAGTATCTGGTACAAGGATTT 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29545260675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5