BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53680.1 Length=675 Score E Sequences producing significant alignments: (Bits) Value Ahg914561 jgi|Araly1|914561|Al_scaffold_0001_4815 1092 0.0 > Ahg914561 jgi|Araly1|914561|Al_scaffold_0001_4815 Length=675 Score = 1092 bits (591), Expect = 0.0 Identities = 649/677 (96%), Gaps = 4/677 (1%) Strand=Plus/Plus Query 1 ATGGGGAAAGAAAATAGCAAAGTTGTTGTTTTGGAC-TTCTGGGCAAGTCCTTACGCTAT 59 |||||||||||| ||||||||||||| ||||||| | || ||||||||||||||||| || Sbjct 1 ATGGGGAAAGAAGATAGCAAAGTTGTAGTTTTGG-CTTTTTGGGCAAGTCCTTACGCGAT 59 Query 60 GAGGACGAAGGTTGCGTTGAGAGAGAAAGGAGTTGAGTTTGAGGTTCAAGAGGAAGATCT 119 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GAGGACGAAGATTGCATTGAGAGAGAAAGGAGTTGAGTTTGAGGTTCAAGAGGAAGATCT 119 Query 120 GTGGAACAAGAGTGAGCTGTTGTTGAAATCAAACCCTGTTCACAAGAAAGTCCCTGTTCT 179 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 120 GTGGAACAAGAGTGAGCTGTTGTTGAAATCAAACCCGGTTCACAAGAAAGTCCCTGTTCT 179 Query 180 TATCCACAACAACACACCAATTTCTGAATCGCTCATCCAAGTTCAGTACATCGACGAGAC 239 ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| Sbjct 180 TATCCACAACAACACACCAATCTCTGAATCACTCATCCAGGTTCAGTACATCGACGAGAC 239 Query 240 GTGGACTGATGCTGCATCTTTCTTGCCCTCTGATCCTCAATCTAGAGCCACTGCAAGGTT 299 |||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| Sbjct 240 GTGGACCGATGCTGCATCTTTCTTACCCACTGATCCTCAATCTAGAGCAACTGCAAGGTT 299 Query 300 CTGGGCTGATTACGCTGATAAAACGATATCATTTgaagga-ggaagaaagatttggggaa 358 ||||||||||| ||||||||||||||| || ||||||||| |||| |||||||||||||| Sbjct 300 CTGGGCTGATTTCGCTGATAAAACGATTTCGTTTGAAGGAGGGAA-AAAGATTTGGGGAA 358 Query 359 acaagaaaggggaagaacaagagaaaggcaagaaagaGTTTCTTGAGAGCTTGAAGGTTC 418 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 ACAAGAAAGGAGAAGAACAAGAGAAAGGCAAGAAAGAGTTTCTTGAGAGCTTGAAGGTTC 418 Query 419 TTGAAGCTGAGCTTGGAGACAAATCTTACTTTGGAGGAGAGACATTTGGTTATGTAGACA 478 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 419 TTGAAGCTGAGCTTGGAGACAAATCTTACTTTGGAGGAGAGACCTTCGGTTATGTAGACA 478 Query 479 TAACTCTTGTCCCGTTTTACAGTTGGTTCTACGCACTCGAGAAATGTGGTGACTTCTCTG 538 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TAACTCTTGTCCCATTCTACAGTTGGTTCTACGCACTCGAGAAATGTGGTGACTTCTCTG 538 Query 539 TCGAAGCTGAGTGTCCGAAGATCGTGGCTTGGGGAAAGAGATGTGTTGAACGAAACAGTG 598 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 539 TCGAAGCTGAGTGTCCGAAGATCGTGGCTTGGGGAAAGAGATGTGTTGAACGCAACAGTG 598 Query 599 TTGCTGCTACATTGCCTGAATCTGAGAAAGTTTATCAACAAGTCCTTAAGCTCAGACAGA 658 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TTGCTGCTTCATTGCCTGAATCTGAGAAAGTTTATCAACAAGTCCTTAAGCTCAGACAGA 658 Query 659 TTTTTGGTGTTGAATGA 675 ||||||||||||||||| Sbjct 659 TTTTTGGTGTTGAATGA 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24779896050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5