BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G53680.1

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914561 jgi|Araly1|914561|Al_scaffold_0001_4815                   1092    0.0  


> Ahg914561 jgi|Araly1|914561|Al_scaffold_0001_4815
Length=675

 Score = 1092 bits (591),  Expect = 0.0
 Identities = 649/677 (96%), Gaps = 4/677 (1%)
 Strand=Plus/Plus

Query  1    ATGGGGAAAGAAAATAGCAAAGTTGTTGTTTTGGAC-TTCTGGGCAAGTCCTTACGCTAT  59
            |||||||||||| ||||||||||||| ||||||| | || ||||||||||||||||| ||
Sbjct  1    ATGGGGAAAGAAGATAGCAAAGTTGTAGTTTTGG-CTTTTTGGGCAAGTCCTTACGCGAT  59

Query  60   GAGGACGAAGGTTGCGTTGAGAGAGAAAGGAGTTGAGTTTGAGGTTCAAGAGGAAGATCT  119
            |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GAGGACGAAGATTGCATTGAGAGAGAAAGGAGTTGAGTTTGAGGTTCAAGAGGAAGATCT  119

Query  120  GTGGAACAAGAGTGAGCTGTTGTTGAAATCAAACCCTGTTCACAAGAAAGTCCCTGTTCT  179
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  120  GTGGAACAAGAGTGAGCTGTTGTTGAAATCAAACCCGGTTCACAAGAAAGTCCCTGTTCT  179

Query  180  TATCCACAACAACACACCAATTTCTGAATCGCTCATCCAAGTTCAGTACATCGACGAGAC  239
            ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct  180  TATCCACAACAACACACCAATCTCTGAATCACTCATCCAGGTTCAGTACATCGACGAGAC  239

Query  240  GTGGACTGATGCTGCATCTTTCTTGCCCTCTGATCCTCAATCTAGAGCCACTGCAAGGTT  299
            |||||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct  240  GTGGACCGATGCTGCATCTTTCTTACCCACTGATCCTCAATCTAGAGCAACTGCAAGGTT  299

Query  300  CTGGGCTGATTACGCTGATAAAACGATATCATTTgaagga-ggaagaaagatttggggaa  358
            ||||||||||| ||||||||||||||| || ||||||||| |||| ||||||||||||||
Sbjct  300  CTGGGCTGATTTCGCTGATAAAACGATTTCGTTTGAAGGAGGGAA-AAAGATTTGGGGAA  358

Query  359  acaagaaaggggaagaacaagagaaaggcaagaaagaGTTTCTTGAGAGCTTGAAGGTTC  418
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  ACAAGAAAGGAGAAGAACAAGAGAAAGGCAAGAAAGAGTTTCTTGAGAGCTTGAAGGTTC  418

Query  419  TTGAAGCTGAGCTTGGAGACAAATCTTACTTTGGAGGAGAGACATTTGGTTATGTAGACA  478
            ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct  419  TTGAAGCTGAGCTTGGAGACAAATCTTACTTTGGAGGAGAGACCTTCGGTTATGTAGACA  478

Query  479  TAACTCTTGTCCCGTTTTACAGTTGGTTCTACGCACTCGAGAAATGTGGTGACTTCTCTG  538
            ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  479  TAACTCTTGTCCCATTCTACAGTTGGTTCTACGCACTCGAGAAATGTGGTGACTTCTCTG  538

Query  539  TCGAAGCTGAGTGTCCGAAGATCGTGGCTTGGGGAAAGAGATGTGTTGAACGAAACAGTG  598
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  539  TCGAAGCTGAGTGTCCGAAGATCGTGGCTTGGGGAAAGAGATGTGTTGAACGCAACAGTG  598

Query  599  TTGCTGCTACATTGCCTGAATCTGAGAAAGTTTATCAACAAGTCCTTAAGCTCAGACAGA  658
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  599  TTGCTGCTTCATTGCCTGAATCTGAGAAAGTTTATCAACAAGTCCTTAAGCTCAGACAGA  658

Query  659  TTTTTGGTGTTGAATGA  675
            |||||||||||||||||
Sbjct  659  TTTTTGGTGTTGAATGA  675



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5