BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53870.1
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314700 jgi|Araly1|314700|fgenesh1_pm.C_scaffold_1003480 955 0.0
Ahg914578 jgi|Araly1|914578|Al_scaffold_0001_4832 577 5e-164
> Ahg314700 jgi|Araly1|314700|fgenesh1_pm.C_scaffold_1003480
Length=651
Score = 955 bits (517), Expect = 0.0
Identities = 614/659 (93%), Gaps = 13/659 (2%)
Strand=Plus/Plus
Query 34 ATGCAAATATACAATCCTATTTCTCCGGTGAAAACCATGGTGAAGATTTATCCTCACCTG 93
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAAATATACAATCCAATTTCTCCGGTGAAAACCATGGTGAAGATTTATCCTCACCTG 60
Query 94 GCGTTTCCGGTGGATA-TGGACGTCGTACAAGACAAGATTTTGCCCTACTTAACGACGGA 152
|||||||||||||||| ||| || ||| ||||||||||| |||||||||| |||| |||
Sbjct 61 GCGTTTCCGGTGGATATTGG-TGTTGTAGAAGACAAGATTGTGCCCTACTTGACGAAGGA 119
Query 153 GCAAGAGAGGTTCACGATTTGGATGAAATCTTTGGTGTTCAATAGCAAAGGCTGCACAGT 212
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 120 GCAAGAGAGTTTCACGATTTGGATGAAATCTTTGGTATTCCATAGCAAAGGCTGCACAGT 179
Query 213 TTTTGATTCCAAAGGAAACTTAATCTATCGAGTGGATAATTATGATTCCAAGAGTTGGAG 272
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 180 TTTTGATTCCAAAGGAAACTTAATCTATCGAGTGGATAACTATAACTCCAAGAGTTGCAG 239
Query 273 TAATGAAGTTTACTTTATGGATTTAAACGGCAAAATTTTGTTTACTTTACGTCAAAAGAA 332
|||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 240 TAATGAAGTTTATTTTATGGATTCATACGGGAAAATTTTGTTTACTTTACGTCAAAAGAA 299
Query 333 ACT-GGGATTCTTCAAATCTTGGGAAGGATATAACTCAACCGGGACCAGATTTCGACTAA 391
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 A-TCGGGATTCTTCAAATCTTGGGAAGGATATAACTCAACCGGGACCAGATTTCGACTAA 358
Query 392 GAAAGATTTTCAAGATTTTGCCAAGAGAATCATCTTCGTCTTACAAAGTTGTAATGGGAT 451
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 359 GAAAGATTTTCAAGATTTTGCCAAGAGATTCATCTT------ACAAAGTTGTAATGGGAT 412
Query 452 CACGCATAGTTGATGGTG---ATCAACAATCTTGTTATAAGATTGTAAATCGTGGATCAG 508
| |||||||||||||||| ||||||| |||||||||||||||||||| || || || |
Sbjct 413 CGCGCATAGTTGATGGTGGTGATCAACAGTCTTGTTATAAGATTGTAAACCGCGGGTCCG 472
Query 509 TTTTCGCAATCAAGGATGGATCGGGAAGATTAATGGCAGAAGTTAAAAACAAACTATCGG 568
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 473 TTTTCGCAATCAAGGATGGGTCGGGAAGATTAATGGCAGAAGTTAAAAATAAACTATCGG 532
Query 569 ATATTAGTGGTTTGGATCTTGGAGATGATGTTTTGACAATGATGGTGGAGCCACAACTAG 628
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 533 ATATTAGTGGTTTGGATCTTGGAGAAGATGTCTTGACAATGATGGTGGAGCCACAACTAG 592
Query 629 ATCATTCTTTAATAATGGGTATTGTTATAGCTTATAAACTTACCAAATGTAAATTGTGA 687
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 593 ATCATTCTATAATAATGGGTATTGTTATAGCTTATAGTCTTACCAAATGTAAATTGTGA 651
> Ahg914578 jgi|Araly1|914578|Al_scaffold_0001_4832
Length=1734
Score = 577 bits (312), Expect = 5e-164
Identities = 483/564 (86%), Gaps = 18/564 (3%)
Strand=Plus/Plus
Query 70 ATGGTGAAGATTTATCCTCACCTGGCGTTTCCGGTGGA-TATGGACGTC-GTACAAGACA 127
|||||||||||| ||||| || || |||| ||||||| | | | || | | | ||||||
Sbjct 1 ATGGTGAAGATTCATCCTGACAAGGTGTTTACGGTGGATTCTAG-CG-CGGGAGAAGACA 58
Query 128 AGATTTTGCCCTACTTAACGACGGAGCAAGAGAGGTTCACGATTTGGATGAAATCT-TTG 186
|||||| ||| ||||||||||||||| ||||||| ||||| |||||||||| |||| ||
Sbjct 59 AGATTTCGCCGTACTTAACGACGGAGAAAGAGAGTTTCACAATTTGGATGAGATCTCTT- 117
Query 187 GTG-TTCAATAGCAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGT 245
||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 118 GTGTTTC-ATAGCAAAGGCTGCACAGTTTATGATTCCAAAGGAAACTTAATCTATCGAGT 176
Query 246 GGATAATTATGATTCCAAGAGTTGGAGTAATGAAGTTTACTTTATGGATTTAAACGGCAA 305
|||||||||| | ||||||||||| ||| ||||||||| ||||||||||| ||||||
Sbjct 177 GGATAATTATAACTCCAAGAGTTGCAGT---GAAGTTTACCTTATGGATTTATTCGGCAA 233
Query 306 AATTTTGTTTACTTTACGTCAAAAGAAACTGGGATTCTTCAAATCTTGGGAAGGATATAA 365
||| |||||||| || |||||||||||| || |||| |||||||||||||||||||||||
Sbjct 234 AATCTTGTTTACGTTGCGTCAAAAGAAATTGAGATTATTCAAATCTTGGGAAGGATATAA 293
Query 366 CTCAACCGGGACCAGATTTCGACTAAGAAAGATTTTCAAGATTTTGCCAAGAGAATCATC 425
|||||||||||| ||||||||||||||||||| |||||||| | |||||||| |||||
Sbjct 294 CTCAACCGGGACAAGATTTCGACTAAGAAAGAACTTCAAGATATCGCCAAGAGGTTCATC 353
Query 426 TTCGTCTTACAAAGTTGTAATGGGATCACGCATAGTTGATGGTGATCAACAA---TCTTG 482
|||||| |||||||||||||||| | | |||| || | ||| |||||||||| |||||
Sbjct 354 TTCGTCATACAAAGTTGTAATGGTACCGCGCAGAGCTAATGATGATCAACAACAATCTTG 413
Query 483 TTATAAGATTGTAAATCGTGGATC-AGTTTTCGCAATCAAGGATGGATCGGGAAGATTAA 541
|||||||||||||| || ||| | ||||| ||||| ||||||||||||| |||||||
Sbjct 414 TTATAAGATTGTAAGCCGCAAATCGA-TTTTCACAATCGAGGATGGATCGGGTAGATTAA 472
Query 542 TGGCAGAAGTTAAAAACAAACTATCG-GATATTAGTGGTTTGGATCTTGGAGATGATGTT 600
|||||||||||||||| |||| |||| | ||| | |||||||||| ||| | |||||
Sbjct 473 TGGCAGAAGTTAAAAAGAAACAATCGAG-TATCAAAAGTTTGGATCTCGGAAAAGATGTG 531
Query 601 TTGACAATGATGGTGGAGCCACAA 624
|| |||||||||||||||||||||
Sbjct 532 TTAACAATGATGGTGGAGCCACAA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27677237742
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5