BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53910.1 Length=1596 Score E Sequences producing significant alignments: (Bits) Value Ahg923954 jgi|Araly1|923954|scaffold_105235.1 1456 0.0 Ahg946686 jgi|Araly1|946686|scaffold_702915.1 119 7e-26 > Ahg923954 jgi|Araly1|923954|scaffold_105235.1 Length=1078 Score = 1456 bits (788), Expect = 0.0 Identities = 1019/1122 (91%), Gaps = 49/1122 (4%) Strand=Plus/Plus Query 111 CACCCTCAAGAATCGCCGCCATGTGTGGAGGAGCTATAATATCCGATTTCATTCCACCGC 170 ||||||||||| || ||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 CACCCTCAAGAGTCACCGACATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCACCGC 60 Query 171 CGAGGTCTCGCCGTGTTACTAGCGAGTTTATTTGGCCGGATCTGAAGAAGAATTTGAAAG 230 ||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 CGAGGTCTCGCCGTGTTACCAGCGAGTTTATTTGGCCGGATC------------------ 102 Query 231 GATCGAAGAAAAGCTCGAAGAATCGTTCGAATTTCTTCGATTTTGACGCTGAGTTCGAAG 290 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 103 --T-GAAGAAAAGCTCGAAGAATCGTTCGAATTTCTTTGATTTTGACGCTGAGTTCGAGG 159 Query 291 CTGATTTCCAAGGTTTCAAAGATGATTCGTCTATCGATTGCGATGATGATTTCGACGTCG 350 |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||| Sbjct 160 CTGATTTCCAAGGTTTCAAAGATGATTCTTCTATTGATTGCGACGATGATTTCGATGTCG 219 Query 351 GTGATGTTTTCGCCGATGTGAAACCATTCGTTTTCACTTCGACTCCAAAACCCGCCGTCT 410 ||||||||| |||||||||||||||||||||||||||||||||||| ||| | Sbjct 220 GTGATGTTTCCGCCGATGTGAAACCATTCGTTTTCACTTCGACTCCGAAA--------C- 270 Query 411 CCGCCGCTGCGGAAGGTTCAGTTTTTGGTAAGAAAGTTACTGGCTTGGATGGGGACGCTG 470 |||||| | | |||||||||| |||||||||| || | | || |||||||| |||| Sbjct 271 CCGCCG-T-C-GAAGGTTCAGCTTTTGGTAAG-AA---A---G-TT-GATGGGGAAGCTG 318 Query 471 AGAAATCTGCAAATAGGAAGAGGAAGAATCAGTACCGAGGGATTAGGCAACGTCCTTGGG 530 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319 AGAAATCTGGAAAGAGGAAGAGGAAGAATCAGTACCGAGGGATTAGGCAACGTCCTTGGG 378 Query 531 GAAAATGGGCTGCTGAGATACGTGATCCAAGGGAAGGTGCTAGAATCTGGCTTGGAACGT 590 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 379 GCAAATGGGCTGCTGAGATACGTGATCCAAGAGAAGGTGCTAGAATCTGGCTTGGAACTT 438 Query 591 TCAAGACAGCTGAGGAAGCTGCTAGAGCTTACGATGCTGCAGCGCGGAGAATCCGTGGAT 650 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 439 TCAAGACAGCTGAGGAAGCTGCTAGAGCTTACGATGCTGCAGCGCGGAGGATCCGTGGAT 498 Query 651 CTAAAGCTAAGGTGAATTTCCCTGAAGAAAACATGAAGGCTAATTCTCAGAAACGCTCTG 710 ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| Sbjct 499 CTAAAGCTAAGGTGAATTTCCCTGAGGAAAACCCCAAGGCTAGTTCTCAGAAACGCTCTG 558 Query 711 TGAAGGCTAATCTTCAGAAACCAGTGGCTAAACCTAACCCTAACCCAAGTCCAGCTTTGG 770 |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 559 TGAAGGCTAATCTTCAGAAACCTGTGGCTAAACCTAACCCAAACCCAAGTCCTGCTTTGG 618 Query 771 TTCAGAA-CTCGAACATCTCCTTTGAAAATATGTGTTTCAT---GGAGGAGAAACACCAA 826 ||||||| || ||||| ||||||||| |||||||||||||| |||||||||||||||| Sbjct 619 TTCAGAACCT-GAACAACTCCTTTGACAATATGTGTTTCATGGAGGAGGAGAAACACCAA 677 Query 827 GTGAG-CAACAACAACAACAACCAGTTTGGGATGACAAACTCCGTTGATGCTGGATGTAA 885 || |||||||||| ||| ||||||||| |||||||||||||||||||||||||||| Sbjct 678 -CAAGTGAACAACAACAGCAATCAGTTTGGGTTGACAAACTCCGTTGATGCTGGATGTAA 736 Query 886 TGGGTATCAGTATTTCAGCTCTGACCAGGGTAGTAATTCTTTCGATTGTTCGGAGTTTGG 945 |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| Sbjct 737 CGGGTATCAGTATTTCAGCTCAGACCAGGGTAGTAATTCGTTCGATTGTTCTGAGTTTGG 796 Query 946 TTGGAGCGATCAAGCTCCGATAACTCCCGACATCTCTTCTGCGGTTATCAACAACAACAA 1005 |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| | Sbjct 797 TTGGAGCGATCAAGCTCCAATAACTCCCGACATCTCTTCTGCGCTTATCAACAGCAACGA 856 Query 1006 CTCAGCTCTGTTCTTTGAGGAAGCCAATCCAGCTAAGAAGCTCAAGTCTATGGATTTCGA 1065 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 857 CTCAGGTCTATTCTTTGAGGAAGCCAATCCAGCTAAGAAGCTCAAGTCTATGGATTTCGA 916 Query 1066 GACACCTTACAACAACACTGAATGGGACGCTTCACTGGATTTCCTCAACGAAGATGCTGT 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 917 GACACCTTACAACAACACTGAATGGGACGCTTCACTGGATTTCCTCAACGAAGATGCTGT 976 Query 1126 AACGACTCAGGACAATGGTGCAAACCCTATGGACCTATGGAGTATTGATGAAATTCATTC 1185 |||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||| Sbjct 977 AACGACTCAGGACAATTGTGCAAACCCTATGGACTTATGGAGCATTGATGAGATTCATTC 1036 Query 1186 CATGATTGGAGGAGTCTTCTGAAGAGATCCAGTTTCATGTAA 1227 |||||| |||||||||||||||||||||||| ||||| |||| Sbjct 1037 CATGATCGGAGGAGTCTTCTGAAGAGATCCATTTTCAAGTAA 1078 > Ahg946686 jgi|Araly1|946686|scaffold_702915.1 Length=240 Score = 119 bits (64), Expect = 7e-26 Identities = 73/77 (95%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 155 GATTTCATTCCACCGCCGAGGTCTCGCCGTGTTACTAGCGAGTTTATTTGGCCGGATCTG 214 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 158 GATTTCATTTCACCGCCGAGGTCTCGCCGTGTTACCAGCGAGTTTATTTGGCCGGATCTG 217 Query 215 AAGAAGAA-TTTGAAAG 230 ||||| || |||||||| Sbjct 218 AAGAA-AACTTTGAAAG 233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59801684650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5