BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53920.1 Length=1171 Score E Sequences producing significant alignments: (Bits) Value Ahg314703 jgi|Araly1|314703|fgenesh1_pm.C_scaffold_1003483 1760 0.0 > Ahg314703 jgi|Araly1|314703|fgenesh1_pm.C_scaffold_1003483 Length=1146 Score = 1760 bits (953), Expect = 0.0 Identities = 1062/1115 (95%), Gaps = 5/1115 (0%) Strand=Plus/Plus Query 58 CTCCTCCTTCATCTTCTTTATCGTCTCTTCTACCATTCTTTTTCTCGCCGGAAAATCCTC 117 |||||||||||||||||||||| ||||||| |||||| | |||||||||||||| ||||| Sbjct 36 CTCCTCCTTCATCTTCTTTATCTTCTCTTCCACCATTATCTTTCTCGCCGGAAAGTCCTC 95 Query 118 GGCCAAAATTTCTCATAACGGTGACAATAATGTGACGGCCTTGTTCCTCTTTGGAGACTC 177 |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 96 AGCCAAATTTTCTCACGACGGTGACAATAATGTGACGGCCTTGTTCCTCTTCGGAGACTC 155 Query 178 TTTCTTGGATGCAGGAAACAATAATTACATTAACACCACTACACTTGACCAAGCCAATTT 237 ||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||| Sbjct 156 TTTCTTGGATGCAGGAAACAATAATTATATAAATACCACAACACTTGACCAAGCCAATTT 215 Query 238 TCCACCTTATGGTCAAACATTCTTTGGCCTCCCCACCGGAAGATTCTCCGACGGTCGTCT 297 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 216 TCCACCTTACGGTCAAACATTCTTTGGCCTCCCCACCGGAAGATTCTCCGACGGTCGTCT 275 Query 298 CATCTCTGATTTCATTGCGGAATATGCGAATTTGCCGTTAATTCCGCCGTTTTTGGAACC 357 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 CATCTCCGATTTCATTGCGGAATATGCGAATTTGCCGTTAATTCCGCCGTTTTTGGAACC 335 Query 358 GGGAAATAGTCAAAAGAAGCTTTACGGCGTCAACTTTGCGTCTGCTGGTGCTGGTGCTCT 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 336 GGGAAATAGTCAAAAGAAGCTTTACGGCGTCAACTTTGCGTCTGCTGGTGCTGGTGCTCT 395 Query 418 TGTGGAAACGTTCCAAGGTTCGGTTATAAATTTGAGAACACAATTGGATCACTACAAGAA 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 396 TGTGGAAACGTTCCAAGGTTCGGTTATAAATTTGAGAACACAATTGGATCACTACAAGGA 455 Query 478 AGTGGAGAGATTATGGAGGACAAACTTTGGTAAAGAAGAAAGCAAGAAGAGAATCTCAAG 537 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 456 AGTGGAGAGATTGTGGAGGACAAAATTTGGTAAAGAAGAAAGCAAGAAGAGAATCTCAAG 515 Query 538 AGCTGTCTATTTGATAAGCATTGGGAGCAATGACTACTCAAGCATTTTCTTGACCAATCA 597 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 516 AGCTGTCTATTTGATAAGCATTGGGAGCAATGACTACTCAAGCCTTTTCTTGACCAATCA 575 Query 598 ATCTCTTCCCATTTCAATGTCTCAACATGTTGACATTGTCATTGGTAATCTGACTACATT 657 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 576 ATCTCTTCCCATTTCAATGTCTCAACATGTTGACATTGTCATTGGTAATATGACTACATT 635 Query 658 CATTCATGAAATATACAAGATTGGAGGACGTAAATTCGGGTTCTTGAATGTGCCTGACTT 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 636 CATTCATGAAATATACAAGATTGGAGGACGTAAATTCGGGTTCTTGAATGTGCCGGATTT 695 Query 718 GGGTTGTTTTCCGGCTTTACGAATTCTACAACCGAAGAATGATGATTCTTGCTTAAGAGA 777 |||||||||||| ||||||||||| ||||||||||| |||||| | ||||||||||||| Sbjct 696 GGGTTGTTTTCCAGCTTTACGAATACTACAACCGAATAATGAT--T-CTTGCTTAAGAGA 752 Query 778 TGCTTCAAGATTAGCAAGCATGCATAACAGAGCTCTGACAAATCTCTTGTTTCAAATGCA 837 ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| Sbjct 753 TGCTTCAAGATTAGCAAACATGCATAACAGAGCTCTGGCAAATCTCTTGTTTAAAATGCA 812 Query 838 AAGACAAGTCAAGGGATTCAAATTCTCCCTATTTGACATGAACAAAAGCCTTAGACTCAG 897 ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| || Sbjct 813 AAGACAAGTCAAGGGCTTCAAGTTCTCCCTCTTTGACATGAACAAAAGCCTTAGACTAAG 872 Query 898 AATGCAACATCCTTCTAAATTTGGGTTTAAAGAAGGGGAAGAAGCTTGTTGTGGAACTGG 957 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || Sbjct 873 AATGCAACATCCTTCTAAATTTGGGTTTAAAGAAGGGGAAGAAGCATGTTGTGGGACAGG 932 Query 958 GAAGTGGAGAGGAGTATTCAGCTGTGGAGGGAAGAGAATTGTGAAAGAATATCAA-TTGT 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 933 GAAGTGGAGAGGAGTATTCAGCTGTGGAGGGAAGAGAATTGTGAAAGAATAT-AAGTTGT 991 Query 1017 GTGAGAATCCTAAAGATTATATTTTTTGGGATTCACTTCATCTCACACAAAATACATATA 1076 |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || | Sbjct 992 GTGAGAATCCTAAAGATTATATCTTTTGGGATTCACTTCATCTCACACAGAATACTTACA 1051 Query 1077 ACCAATTCGCAAACTTAATTTGGAACGGTGGACACATGTCAGATTCTCTAGTGGTTGGTC 1136 ||||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||||||| | Sbjct 1052 ACCAATTTGCAAATTTAATTTGGAATGGTGGGCACAAGTCAGATTCTCTAGTGGTTGGCC 1111 Query 1137 CATACAATATCAATAATTTATTTCAGATTCCTTGA 1171 |||||||||||||||| ||||||||||| |||||| Sbjct 1112 CATACAATATCAATAAGTTATTTCAGATCCCTTGA 1146 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43688862882 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5