BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G53920.1

Length=1171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314703 jgi|Araly1|314703|fgenesh1_pm.C_scaffold_1003483          1760    0.0  


> Ahg314703 jgi|Araly1|314703|fgenesh1_pm.C_scaffold_1003483
Length=1146

 Score = 1760 bits (953),  Expect = 0.0
 Identities = 1062/1115 (95%), Gaps = 5/1115 (0%)
 Strand=Plus/Plus

Query  58    CTCCTCCTTCATCTTCTTTATCGTCTCTTCTACCATTCTTTTTCTCGCCGGAAAATCCTC  117
             |||||||||||||||||||||| ||||||| |||||| | |||||||||||||| |||||
Sbjct  36    CTCCTCCTTCATCTTCTTTATCTTCTCTTCCACCATTATCTTTCTCGCCGGAAAGTCCTC  95

Query  118   GGCCAAAATTTCTCATAACGGTGACAATAATGTGACGGCCTTGTTCCTCTTTGGAGACTC  177
              |||||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||
Sbjct  96    AGCCAAATTTTCTCACGACGGTGACAATAATGTGACGGCCTTGTTCCTCTTCGGAGACTC  155

Query  178   TTTCTTGGATGCAGGAAACAATAATTACATTAACACCACTACACTTGACCAAGCCAATTT  237
             ||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct  156   TTTCTTGGATGCAGGAAACAATAATTATATAAATACCACAACACTTGACCAAGCCAATTT  215

Query  238   TCCACCTTATGGTCAAACATTCTTTGGCCTCCCCACCGGAAGATTCTCCGACGGTCGTCT  297
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216   TCCACCTTACGGTCAAACATTCTTTGGCCTCCCCACCGGAAGATTCTCCGACGGTCGTCT  275

Query  298   CATCTCTGATTTCATTGCGGAATATGCGAATTTGCCGTTAATTCCGCCGTTTTTGGAACC  357
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  276   CATCTCCGATTTCATTGCGGAATATGCGAATTTGCCGTTAATTCCGCCGTTTTTGGAACC  335

Query  358   GGGAAATAGTCAAAAGAAGCTTTACGGCGTCAACTTTGCGTCTGCTGGTGCTGGTGCTCT  417
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  336   GGGAAATAGTCAAAAGAAGCTTTACGGCGTCAACTTTGCGTCTGCTGGTGCTGGTGCTCT  395

Query  418   TGTGGAAACGTTCCAAGGTTCGGTTATAAATTTGAGAACACAATTGGATCACTACAAGAA  477
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  396   TGTGGAAACGTTCCAAGGTTCGGTTATAAATTTGAGAACACAATTGGATCACTACAAGGA  455

Query  478   AGTGGAGAGATTATGGAGGACAAACTTTGGTAAAGAAGAAAGCAAGAAGAGAATCTCAAG  537
             |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  456   AGTGGAGAGATTGTGGAGGACAAAATTTGGTAAAGAAGAAAGCAAGAAGAGAATCTCAAG  515

Query  538   AGCTGTCTATTTGATAAGCATTGGGAGCAATGACTACTCAAGCATTTTCTTGACCAATCA  597
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  516   AGCTGTCTATTTGATAAGCATTGGGAGCAATGACTACTCAAGCCTTTTCTTGACCAATCA  575

Query  598   ATCTCTTCCCATTTCAATGTCTCAACATGTTGACATTGTCATTGGTAATCTGACTACATT  657
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  576   ATCTCTTCCCATTTCAATGTCTCAACATGTTGACATTGTCATTGGTAATATGACTACATT  635

Query  658   CATTCATGAAATATACAAGATTGGAGGACGTAAATTCGGGTTCTTGAATGTGCCTGACTT  717
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  636   CATTCATGAAATATACAAGATTGGAGGACGTAAATTCGGGTTCTTGAATGTGCCGGATTT  695

Query  718   GGGTTGTTTTCCGGCTTTACGAATTCTACAACCGAAGAATGATGATTCTTGCTTAAGAGA  777
             |||||||||||| ||||||||||| ||||||||||| ||||||  | |||||||||||||
Sbjct  696   GGGTTGTTTTCCAGCTTTACGAATACTACAACCGAATAATGAT--T-CTTGCTTAAGAGA  752

Query  778   TGCTTCAAGATTAGCAAGCATGCATAACAGAGCTCTGACAAATCTCTTGTTTCAAATGCA  837
             ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct  753   TGCTTCAAGATTAGCAAACATGCATAACAGAGCTCTGGCAAATCTCTTGTTTAAAATGCA  812

Query  838   AAGACAAGTCAAGGGATTCAAATTCTCCCTATTTGACATGAACAAAAGCCTTAGACTCAG  897
             ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct  813   AAGACAAGTCAAGGGCTTCAAGTTCTCCCTCTTTGACATGAACAAAAGCCTTAGACTAAG  872

Query  898   AATGCAACATCCTTCTAAATTTGGGTTTAAAGAAGGGGAAGAAGCTTGTTGTGGAACTGG  957
             ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct  873   AATGCAACATCCTTCTAAATTTGGGTTTAAAGAAGGGGAAGAAGCATGTTGTGGGACAGG  932

Query  958   GAAGTGGAGAGGAGTATTCAGCTGTGGAGGGAAGAGAATTGTGAAAGAATATCAA-TTGT  1016
             |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  933   GAAGTGGAGAGGAGTATTCAGCTGTGGAGGGAAGAGAATTGTGAAAGAATAT-AAGTTGT  991

Query  1017  GTGAGAATCCTAAAGATTATATTTTTTGGGATTCACTTCATCTCACACAAAATACATATA  1076
             |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct  992   GTGAGAATCCTAAAGATTATATCTTTTGGGATTCACTTCATCTCACACAGAATACTTACA  1051

Query  1077  ACCAATTCGCAAACTTAATTTGGAACGGTGGACACATGTCAGATTCTCTAGTGGTTGGTC  1136
             ||||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||||||| |
Sbjct  1052  ACCAATTTGCAAATTTAATTTGGAATGGTGGGCACAAGTCAGATTCTCTAGTGGTTGGCC  1111

Query  1137  CATACAATATCAATAATTTATTTCAGATTCCTTGA  1171
             |||||||||||||||| ||||||||||| ||||||
Sbjct  1112  CATACAATATCAATAAGTTATTTCAGATCCCTTGA  1146



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43688862882


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5