BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54100.1
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474541 jgi|Araly1|474541|fgenesh2_kg.1__4495__AT1G54100.1 2529 0.0
> Ahg474541 jgi|Araly1|474541|fgenesh2_kg.1__4495__AT1G54100.1
Length=1734
Score = 2529 bits (1369), Expect = 0.0
Identities = 1552/1639 (95%), Gaps = 17/1639 (1%)
Strand=Plus/Plus
Query 77 TTTAAGCtttttttA-CAAAAGACGTACACGtctctctctctcACTCCCTCTTT-A-A-- 131
||| ||| ||||||| ||||||||||||||||||||||||||| || ||| ||| | |
Sbjct 46 TTTCAGC-TTTTTTACCAAAAGACGTACACGTCTCTCTCTCTCTCT-CCTTTTTAAGATT 103
Query 132 ----GATCAGAAGCTCATTTCTTCGATACGATCAACCATTAGAGATGGGTTCGGCGAACA 187
||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||
Sbjct 104 CCGTGATCAGAAGCTCATTTCTTCGATACGATCCA-CATCAGAGATGGGTTCAGCGAACA 162
Query 188 ACGAGTACGAGTTTCTGAGTGAGATTGGGC-TGACTTCTCACAACTTGGGATCTTACGTT 246
| |||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||
Sbjct 163 AAGAGTACGAGTTTCTGAGTGAGATT-GGCTTGACCTCTCACAACCTGGGATCTTACGTT 221
Query 247 GCTGGCAAATGGCAAGCCAACGGACCTCTTGTTTCAACTCTCAATCCTGCTAACAATCAG 306
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 222 GCTGGCAAATGGCAAGCAAACGGACCTCTTGTTTCCACTTTCAATCCTGCTAACAATCAG 281
Query 307 CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAGGATTACGAGCAAGGTTTGAAAGCTTGC 366
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 282 CCAATTGCTCAAGTTGTGGAAGCTTCTCTAGAAGATTACGAGCAAAGTTTGAAAGCCTGC 341
Query 367 GAGGAAGCAGCTAAAATATGGATGCAGGTTACGGCTCCTAAGAGAGGTGATATCGTCAGA 426
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 342 GAGGAAGCAGCCAAAATATGGATGCAGGTTACGGCTCCTAAGAGAGGTGATATTGTGAGA 401
Query 427 CAGATTGGGGATGCACTAAGATCCAAACTTGACTATCTTGGTCGTCTTCTTTCTCTTGAA 486
|||||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 402 CAGATTGGAGATGCATTAAGATCCAAACTTGATTATCTTGGTCGTCTTCTTTCACTTGAA 461
Query 487 ATGGGAAAGATCCTTGCTGAAGGTATTGGAGAAGTTCAGGAAGTAATTGACATGTGTGAT 546
||||||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||
Sbjct 462 ATGGGAAAGATTCTTGCTGAAGGAATCGGAGAAGTCCAGGAAGTAATTGATATGTGTGAT 521
Query 547 TTTGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACGCCCTAAC 606
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 522 TTTGCTGTTGGTTTGAGCCGGCAACTCAATGGATCCGTTATACCTTCCGAACGCCCTAAC 581
Query 607 CACATGATGTTGGAGATGTGGAATCCTCTTGGCATTGTTGGTGTTATCACAGCGTTTAAT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CACATGATGTTGGAGATGTGGAATCCTCTTGGCATTGTTGGTGTTATCACAGCGTTTAAT 641
Query 667 TTTCCCTGTGCAGTTCTTGGTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTA 726
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 642 TTTCCCTGTGCAGTTCTTGGTTGGAATGCTTGTATTGCACTGGTCTGTGGAAACTGTGTA 701
Query 727 GTCTGGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGTAGCT 786
|||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||
Sbjct 702 GTCTGGAAAGGTGCTCCAACAACACCGTTGATCACTATTGCAATGACCAAGCTAGTAGCT 761
Query 787 GAAGTTTTAGAGAAAAACAACTTACCCGGTGCCATTTTTACGGCCATGTGTGGTGGTGCT 846
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 762 GAAGTTTTAGAGAAGAACAATTTACCTGGTGCCATTTTTACGGCCATGTGTGGTGGTGCT 821
Query 847 GAAATTGGTGAAGCAATAGCCAAAGACACACGCATTCCCTTAGTATCCTTTACTGGAAGC 906
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 822 GAAATTGGTGAAGCAATAGCGAAAGACACGCGCATTCCCTTAGTATCCTTTACTGGAAGC 881
Query 907 TCCAGGGTGGGCTCAATGGTACAACAAACAGTGAATGCGAGATCTGGGAAAACTTTGCTT 966
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 882 TCCAGGGTGGGCTTGATGGTACAACAAACAGTGAATGCGAGATCTGGCAAAACTTTACTT 941
Query 967 GAGTTGAGTGGAAACAATGCAATCATAGTCATGGACGATGCTGATATACAGTTAGCGGCT 1026
|| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 942 GAACTGAGTGGAAATAATGCAATCATAGTCATGGACGACGCTGACATACAGTTAGCGGCT 1001
Query 1027 CGATCTGTTCTATTCGCTGCGGTTGGAACTGCTGGTCAACGTTGCACAACTTGCCGTAGG 1086
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CGATCTGTTCTATTTGCTGCGGTTGGAACTGCTGGTCAACGTTGCACAACTTGCCGTAGG 1061
Query 1087 CTGCTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACCTCATACAAA 1146
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1062 CTGCTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACTTCATACAAA 1121
Query 1147 CAAGTCAAAATCGGCAATCCTCTTGAGAAAGGGACATTGTTAGGACCATTACATACTCCT 1206
|||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1122 CAAGTCAAAATCGGTAATCCTCTTGAGAAAGGGACATTGTTAGGACCACTGCATACTCCT 1181
Query 1207 GAATCAAAAAAGAACTTTGAGAAAGGAATTGAAGTCATCAAATCCCAGG---GTGGTAAA 1263
|||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1182 GAATCAAAAAGGAACTTTGAGAAAGGAATTGAAGTCATCAAATCCCAGGCACGCGGTAAA 1241
Query 1264 ATACTAACGGGAGGTAAAGCAGTCGAAGGTGAAGGAAACTTTGTGGAGCCTACGATAATC 1323
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1242 ATACTAACGGGCGGTAAAGCAGTCGATGGTGAAGGGAACTTTGTGGAGCCTACGATAATC 1301
Query 1324 GAGATATCAGCAGATGCTGCTGTCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTT 1383
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1302 GAGATATCAGCAGATGCTGCTGTCGTTAAAGAAGAGCTATTTGCTCCGGTTTTATATGTT 1361
Query 1384 CTAAAGTTTAAGTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTA 1443
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1362 CTAAAGTTTAAGTCATTTGAAGAAGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTA 1421
Query 1444 AGCAGCTCGATATTCACTCGGAACCCTGAAAACATCTTCAGGTGGATCGGACCACTGGGA 1503
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1422 AGCAGCTCGATATTCACTCGCAACCCCGAAAACATCTTCAGGTGGATCGGACCACTGGGA 1481
Query 1504 AGTGACTGTGGCATTGTGAATGTGAACATACCGACGAATGGAGCTGAGATTGGTGGAGCT 1563
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AGTGATTGTGGCATTGTGAATGTGAACATACCGACGAATGGAGCTGAGATTGGTGGAGCC 1541
Query 1564 TTTGGAGGCGAGAAAGCGACTGGTGGTGGTCGTGAAGCTGGAAGCGACTCATGGAAACAG 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 TTTGGAGGCGAGAAAGCGACTGGTGGTGGTCGTGAAGCTGGAAGCGACTCATGGAAACAG 1601
Query 1624 TACATGCGTCGATCGACTTGTACCATCAACTATGGAAACGAGTTACCTCTAGCGCAAGGA 1683
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1602 TACATGCGTCGATCCACTTGTACCATCAACTATGGGAACGAGTTACCTCTAGCGCAAGGA 1661
Query 1684 ATTAACTTCGGTTAGATTT 1702
|||||||||||||||||||
Sbjct 1662 ATTAACTTCGGTTAGATTT 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70200321535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5