BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54270.1 Length=1759 Score E Sequences producing significant alignments: (Bits) Value Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877 2050 0.0 Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445 1496 0.0 > Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877 Length=1239 Score = 2050 bits (1110), Expect = 0.0 Identities = 1196/1239 (97%), Gaps = 0/1239 (0%) Strand=Plus/Plus Query 273 ATGGCAGGATCCGCACCGGAAGGAACACAATTTGATACGCGTCAGTTTGACCAGAGGCTG 332 ||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| |||| Sbjct 1 ATGGCAGGATCTGCAGCAGAAGGTACACAATTTGATACGCGTCAGTTTGACCAGAAGCTG 60 Query 333 AATGAAGTTCTCGATGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC 392 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AATGAAGTACTCGAGGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC 120 Query 393 TTTGATGCCATGGGTTTGCAAGAGAATCTTCTTAGGGGTATCTATGCTTACGGTTTCGAA 452 |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| Sbjct 121 TTTGATGCCATGGGTTTGCAAGAGAACCTTCTCAGGGGTATCTATGCTTATGGTTTCGAA 180 Query 453 AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATC 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATC 240 Query 513 CAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCAG 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCAG 300 Query 573 CTTGACTATGCCCTTCTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTGCT 632 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTTGACTATACCCTTGTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTGCT 360 Query 633 CAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGACTACCAAGGTGTCAAGGTTCATGCC 692 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 361 CAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGATTACCAAGGCGTCAAAGTTCATGCC 420 Query 693 TGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATGTT 752 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TGTGTTGGTGGAACCAGCGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATGTT 480 Query 753 GTCGTTGGAACTCCCGGTCGTGTTTTTGACATGCTTAGAAGACAATCTCTCCGCCCTGAC 812 || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 481 GTGGTTGGAACTCCCGGTCGTGTGTTTGACATGCTTAGAAGACAATCTCTTCGCCCTGAT 540 Query 813 TGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGAT 872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGAT 600 Query 873 CAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCTGCG 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 601 CAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCAGCA 660 Query 933 ACAATGCCTCCGGAAGCTTTGGAGATCACAAGAAAATTCATGAGCAAACCAGTGAGAATC 992 || ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 661 ACGATGCCTCCGGAAGCTCTGGAGATCACAAGGAAATTCATGAGCAAACCAGTGAGAATC 720 Query 993 TTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGTGGAG 1052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGTGGAG 780 Query 1053 AAAGAAGACTGGAAGCTTGAGACTCTCTGCGATCTCTACGAGACTCTAGCCATCACTCAG 1112 |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 781 AAAGAAGAGTGGAAGCTCGAGACTCTCTGCGATCTCTATGAGACTCTAGCCATCACTCAG 840 Query 1113 AGTGTCATCTTTGTCAACACTCGTCGCAAGGTCGACTGGCTCACAGACAAAATGAGAAGC 1172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AGTGTCATCTTTGTCAACACTCGTCGCAAGGTCGACTGGCTCACAGACAAAATGAGAAGC 900 Query 1173 CGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACCAGAGACATCATC 1232 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 901 CGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACAAGAGACATCATC 960 Query 1233 ATGAGAGAGTTCAGGTCTGGCTCGTCTCGTGTTCTAATCACAACCGATCTCTTGGCTCGT 1292 |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct 961 ATGAGAGAATTCAGGTCTGGTTCTTCTCGTGTTCTAATCACGACCGATCTCTTGGCTCGT 1020 Query 1293 GGTATCGATGTGCAGCAAGTCTCTCTAGTCATAAACTTTGACCTCCCAACTCAGCCAGAG 1352 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1021 GGTATTGATGTGCAGCAAGTCTCTCTGGTCATAAACTTTGACCTCCCAACTCAGCCAGAG 1080 Query 1353 AATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGATTAAC 1412 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1081 AATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCCATTAAC 1140 Query 1413 TTTGTGACTCTTGATGATCAGAGAATGCTGTTTGATATTCAGAAATTCTACAATGTGGTT 1472 || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1141 TTCGTGACTCGTGATGATGATAGAATGCTGTTTGATATTCAGAAATTCTACAATGTGGTC 1200 Query 1473 GTTGAGGAGCTTCCCTCAAACGTGGCTGATTTGCTGTga 1511 ||||||||||||||||||||||| || |||||||||||| Sbjct 1201 GTTGAGGAGCTTCCCTCAAACGTTGCCGATTTGCTGTGA 1239 > Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445 Length=1239 Score = 1496 bits (810), Expect = 0.0 Identities = 1101/1244 (89%), Gaps = 10/1244 (1%) Strand=Plus/Plus Query 273 ATGGCAGGATCCGCACCGGAAGGAACACAATTTGATACGCGTCAGTTTGACCAGAGGCTG 332 ||||| ||||| ||||| ||||| ||||| |||||| | ||||||||||| |||| ||| Sbjct 1 ATGGCGGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGATCAGAAACTG 60 Query 333 AATGAAGTTCTCGATGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC 392 |||||||| || || ||||| |||||||||||||| || ||||||||||| ||||||||| Sbjct 61 AATGAAGTACTTGAGGGACAAGATGAGTTCTTCACATCTTATGATGAGGTTCATGAGAGC 120 Query 393 TTTGATGCCATGGGTTTGCAAGAGAATCTTCTTAGGGGTATCTATGCTTACGGTTTCGAA 452 ||||||||||||||| |||||||||| ||||| |||||||| |||||||| ||||| || Sbjct 121 TTTGATGCCATGGGTCTGCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGGTTTTGAG 180 Query 453 AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATC 512 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 181 AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTCCCCTTTTGCAAAGGTCTTGATGTGATT 240 Query 513 CAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCAG 572 || ||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 241 CAACAGGCCCAGTCTGGTACTGGGAAAACTGCGACTTTCTGCTCTGGTGTCTTGCAGCAG 300 Query 573 CTTGAC-TATGCCCTTCTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTGC 631 || ||| | | ||||| ||||||| |||||| | ||| | ||||| || ||||||||||| Sbjct 301 CTGGACTTCT-CCCTTGTCCAGTGTCAGGCTTTGGTTCTAGCTCCAACTAGAGAGCTTGC 359 Query 632 TCAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGACTACCAAGGTGTCAAGGTTCATGC 691 |||||| ||||||||||||||| | ||||| ||||| |||| |||||||||||||| || Sbjct 360 TCAGCAAATTGAGAAGGTCATGAGGGCCCTCGGTGATTACCTTGGTGTCAAGGTTCACGC 419 Query 692 CTGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATGT 751 |||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| Sbjct 420 CTGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGTATCCTCCAAGCTGGTGTCCATGT 479 Query 752 TGTCGTTGGAACTCCCGGTCGTGTTTTTGACATGCTTAGAAGA--CAATCTCTCCGCCCT 809 ||| ||||||||||| || ||||| ||||||||| || ||||| || |||||||| || Sbjct 480 TGTTGTTGGAACTCCAGGACGTGTCTTTGACATG-TT-GAAGAGGCAGTCTCTCCGTGCT 537 Query 810 GACTGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAG 869 ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 538 GACAACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAG 597 Query 870 GATCAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCT 929 || |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct 598 GACCAGATCTATGACATATTCCAGCTTCTACCACCAAAGATCCAAGTTGGTGTGTTCTCC 657 Query 930 GCGACAATGCCTCCGGAAGCT-TTGGAGATCACAAGAAAATTCATGAGCAAACCAGTGAG 988 || |||||||| || |||||| || ||||||||||| || ||||||||||| |||||||| Sbjct 658 GCAACAATGCCACCAGAAGCTCTT-GAGATCACAAGGAAGTTCATGAGCAAGCCAGTGAG 716 Query 989 AATCTTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGT 1048 |||||||||||| ||||||||||| || ||||||||||||||||| ||||| || ||||| Sbjct 717 AATCTTGGTGAAGCGTGATGAGCTGACCCTTGAAGGTATCAAGCAGTTCTATGTCAACGT 776 Query 1049 GGAGAAAGAAGACTGGAAGCTTGAGACTCTCTGCGATCTCTACGAGACTCTAGCCATCAC 1108 ||||||||||| |||||||| ||||| || || ||||||||||||||||| |||||||| Sbjct 777 TGAGAAAGAAGAGTGGAAGCTCGAGACACTTTGTGATCTCTACGAGACTCTGGCCATCAC 836 Query 1109 TCAGAGTGTCATCTTTGTCAACACTC-GTCGCAAGGTCGACTGGCTCACAGACAAAATGA 1167 ||||||||||||||| || ||||| | | || ||||| || ||||||||||||||||||| Sbjct 837 TCAGAGTGTCATCTTCGTGAACAC-CAGGCGTAAGGTTGATTGGCTCACAGACAAAATGA 895 Query 1168 GAAGCCGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACCAGAGACA 1227 |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 896 GAAGCCGTGACCACACAGTCTCTGCAACTCACGGAGACATGGACCAGAACACCAGAGACA 955 Query 1228 TCATCATGAGAGAGTTCAGGTCTGGCTCGTCTCGTGTTCTAATCACAACCGATCTCTTGG 1287 ||||||||||||||||||||||||| || || |||||||| ||||| || || ||||||| Sbjct 956 TCATCATGAGAGAGTTCAGGTCTGGTTCCTCCCGTGTTCTCATCACCACTGACCTCTTGG 1015 Query 1288 CTCGTGGTATCGATGTGCAGCAAGTCTCTCTAGTCATAAACTTTGACCTCCCAACTCAGC 1347 |||||||||| ||||| || ||||||||||| || || ||||| || ||||||||||||| Sbjct 1016 CTCGTGGTATTGATGTTCAACAAGTCTCTCTGGTTATCAACTTCGATCTCCCAACTCAGC 1075 Query 1348 CAGAGAATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGA 1407 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 CAGAGAACTACCTCCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGA 1135 Query 1408 TTAACTTTGTGACTCTTGATGATCAGAGAATGCTGTTTGATATTCAGAAATTCTACAATG 1467 | || |||||||| | |||||| | || |||||||||||||||||||| ||||| || | Sbjct 1136 TCAATTTTGTGACCCGCGATGATGACAGGATGCTGTTTGATATTCAGAAGTTCTATAACG 1195 Query 1468 TGGTTGTTGAGGAGCTTCCCTCAAACGTGGCTGATTTGCTGTga 1511 ||||||| || ||||| || ||||||||||| ||| |||||||| Sbjct 1196 TGGTTGTCGAAGAGCTGCCTTCAAACGTGGCCGATCTGCTGTGA 1239 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66010394585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5