BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54270.1
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877 2050 0.0
Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445 1496 0.0
> Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877
Length=1239
Score = 2050 bits (1110), Expect = 0.0
Identities = 1196/1239 (97%), Gaps = 0/1239 (0%)
Strand=Plus/Plus
Query 273 ATGGCAGGATCCGCACCGGAAGGAACACAATTTGATACGCGTCAGTTTGACCAGAGGCTG 332
||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGCAGGATCTGCAGCAGAAGGTACACAATTTGATACGCGTCAGTTTGACCAGAAGCTG 60
Query 333 AATGAAGTTCTCGATGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC 392
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATGAAGTACTCGAGGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC 120
Query 393 TTTGATGCCATGGGTTTGCAAGAGAATCTTCTTAGGGGTATCTATGCTTACGGTTTCGAA 452
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 121 TTTGATGCCATGGGTTTGCAAGAGAACCTTCTCAGGGGTATCTATGCTTATGGTTTCGAA 180
Query 453 AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATC 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATC 240
Query 513 CAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCAG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCAG 300
Query 573 CTTGACTATGCCCTTCTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTGCT 632
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTGACTATACCCTTGTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTGCT 360
Query 633 CAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGACTACCAAGGTGTCAAGGTTCATGCC 692
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 361 CAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGATTACCAAGGCGTCAAAGTTCATGCC 420
Query 693 TGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATGTT 752
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTGTTGGTGGAACCAGCGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATGTT 480
Query 753 GTCGTTGGAACTCCCGGTCGTGTTTTTGACATGCTTAGAAGACAATCTCTCCGCCCTGAC 812
|| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 481 GTGGTTGGAACTCCCGGTCGTGTGTTTGACATGCTTAGAAGACAATCTCTTCGCCCTGAT 540
Query 813 TGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGAT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGAT 600
Query 873 CAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCTGCG 932
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 CAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCAGCA 660
Query 933 ACAATGCCTCCGGAAGCTTTGGAGATCACAAGAAAATTCATGAGCAAACCAGTGAGAATC 992
|| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 ACGATGCCTCCGGAAGCTCTGGAGATCACAAGGAAATTCATGAGCAAACCAGTGAGAATC 720
Query 993 TTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGTGGAG 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGTGGAG 780
Query 1053 AAAGAAGACTGGAAGCTTGAGACTCTCTGCGATCTCTACGAGACTCTAGCCATCACTCAG 1112
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AAAGAAGAGTGGAAGCTCGAGACTCTCTGCGATCTCTATGAGACTCTAGCCATCACTCAG 840
Query 1113 AGTGTCATCTTTGTCAACACTCGTCGCAAGGTCGACTGGCTCACAGACAAAATGAGAAGC 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGTGTCATCTTTGTCAACACTCGTCGCAAGGTCGACTGGCTCACAGACAAAATGAGAAGC 900
Query 1173 CGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACCAGAGACATCATC 1232
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 CGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACAAGAGACATCATC 960
Query 1233 ATGAGAGAGTTCAGGTCTGGCTCGTCTCGTGTTCTAATCACAACCGATCTCTTGGCTCGT 1292
|||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 961 ATGAGAGAATTCAGGTCTGGTTCTTCTCGTGTTCTAATCACGACCGATCTCTTGGCTCGT 1020
Query 1293 GGTATCGATGTGCAGCAAGTCTCTCTAGTCATAAACTTTGACCTCCCAACTCAGCCAGAG 1352
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 GGTATTGATGTGCAGCAAGTCTCTCTGGTCATAAACTTTGACCTCCCAACTCAGCCAGAG 1080
Query 1353 AATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGATTAAC 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 AATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCCATTAAC 1140
Query 1413 TTTGTGACTCTTGATGATCAGAGAATGCTGTTTGATATTCAGAAATTCTACAATGTGGTT 1472
|| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTCGTGACTCGTGATGATGATAGAATGCTGTTTGATATTCAGAAATTCTACAATGTGGTC 1200
Query 1473 GTTGAGGAGCTTCCCTCAAACGTGGCTGATTTGCTGTga 1511
||||||||||||||||||||||| || ||||||||||||
Sbjct 1201 GTTGAGGAGCTTCCCTCAAACGTTGCCGATTTGCTGTGA 1239
> Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445
Length=1239
Score = 1496 bits (810), Expect = 0.0
Identities = 1101/1244 (89%), Gaps = 10/1244 (1%)
Strand=Plus/Plus
Query 273 ATGGCAGGATCCGCACCGGAAGGAACACAATTTGATACGCGTCAGTTTGACCAGAGGCTG 332
||||| ||||| ||||| ||||| ||||| |||||| | ||||||||||| |||| |||
Sbjct 1 ATGGCGGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGATCAGAAACTG 60
Query 333 AATGAAGTTCTCGATGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC 392
|||||||| || || ||||| |||||||||||||| || ||||||||||| |||||||||
Sbjct 61 AATGAAGTACTTGAGGGACAAGATGAGTTCTTCACATCTTATGATGAGGTTCATGAGAGC 120
Query 393 TTTGATGCCATGGGTTTGCAAGAGAATCTTCTTAGGGGTATCTATGCTTACGGTTTCGAA 452
||||||||||||||| |||||||||| ||||| |||||||| |||||||| ||||| ||
Sbjct 121 TTTGATGCCATGGGTCTGCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGGTTTTGAG 180
Query 453 AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATC 512
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 181 AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTCCCCTTTTGCAAAGGTCTTGATGTGATT 240
Query 513 CAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCAG 572
|| ||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 241 CAACAGGCCCAGTCTGGTACTGGGAAAACTGCGACTTTCTGCTCTGGTGTCTTGCAGCAG 300
Query 573 CTTGAC-TATGCCCTTCTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTGC 631
|| ||| | | ||||| ||||||| |||||| | ||| | ||||| || |||||||||||
Sbjct 301 CTGGACTTCT-CCCTTGTCCAGTGTCAGGCTTTGGTTCTAGCTCCAACTAGAGAGCTTGC 359
Query 632 TCAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGACTACCAAGGTGTCAAGGTTCATGC 691
|||||| ||||||||||||||| | ||||| ||||| |||| |||||||||||||| ||
Sbjct 360 TCAGCAAATTGAGAAGGTCATGAGGGCCCTCGGTGATTACCTTGGTGTCAAGGTTCACGC 419
Query 692 CTGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATGT 751
|||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||
Sbjct 420 CTGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGTATCCTCCAAGCTGGTGTCCATGT 479
Query 752 TGTCGTTGGAACTCCCGGTCGTGTTTTTGACATGCTTAGAAGA--CAATCTCTCCGCCCT 809
||| ||||||||||| || ||||| ||||||||| || ||||| || |||||||| ||
Sbjct 480 TGTTGTTGGAACTCCAGGACGTGTCTTTGACATG-TT-GAAGAGGCAGTCTCTCCGTGCT 537
Query 810 GACTGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAG 869
||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 538 GACAACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAG 597
Query 870 GATCAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCT 929
|| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 598 GACCAGATCTATGACATATTCCAGCTTCTACCACCAAAGATCCAAGTTGGTGTGTTCTCC 657
Query 930 GCGACAATGCCTCCGGAAGCT-TTGGAGATCACAAGAAAATTCATGAGCAAACCAGTGAG 988
|| |||||||| || |||||| || ||||||||||| || ||||||||||| ||||||||
Sbjct 658 GCAACAATGCCACCAGAAGCTCTT-GAGATCACAAGGAAGTTCATGAGCAAGCCAGTGAG 716
Query 989 AATCTTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGT 1048
|||||||||||| ||||||||||| || ||||||||||||||||| ||||| || |||||
Sbjct 717 AATCTTGGTGAAGCGTGATGAGCTGACCCTTGAAGGTATCAAGCAGTTCTATGTCAACGT 776
Query 1049 GGAGAAAGAAGACTGGAAGCTTGAGACTCTCTGCGATCTCTACGAGACTCTAGCCATCAC 1108
||||||||||| |||||||| ||||| || || ||||||||||||||||| ||||||||
Sbjct 777 TGAGAAAGAAGAGTGGAAGCTCGAGACACTTTGTGATCTCTACGAGACTCTGGCCATCAC 836
Query 1109 TCAGAGTGTCATCTTTGTCAACACTC-GTCGCAAGGTCGACTGGCTCACAGACAAAATGA 1167
||||||||||||||| || ||||| | | || ||||| || |||||||||||||||||||
Sbjct 837 TCAGAGTGTCATCTTCGTGAACAC-CAGGCGTAAGGTTGATTGGCTCACAGACAAAATGA 895
Query 1168 GAAGCCGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACCAGAGACA 1227
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 896 GAAGCCGTGACCACACAGTCTCTGCAACTCACGGAGACATGGACCAGAACACCAGAGACA 955
Query 1228 TCATCATGAGAGAGTTCAGGTCTGGCTCGTCTCGTGTTCTAATCACAACCGATCTCTTGG 1287
||||||||||||||||||||||||| || || |||||||| ||||| || || |||||||
Sbjct 956 TCATCATGAGAGAGTTCAGGTCTGGTTCCTCCCGTGTTCTCATCACCACTGACCTCTTGG 1015
Query 1288 CTCGTGGTATCGATGTGCAGCAAGTCTCTCTAGTCATAAACTTTGACCTCCCAACTCAGC 1347
|||||||||| ||||| || ||||||||||| || || ||||| || |||||||||||||
Sbjct 1016 CTCGTGGTATTGATGTTCAACAAGTCTCTCTGGTTATCAACTTCGATCTCCCAACTCAGC 1075
Query 1348 CAGAGAATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGA 1407
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CAGAGAACTACCTCCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGA 1135
Query 1408 TTAACTTTGTGACTCTTGATGATCAGAGAATGCTGTTTGATATTCAGAAATTCTACAATG 1467
| || |||||||| | |||||| | || |||||||||||||||||||| ||||| || |
Sbjct 1136 TCAATTTTGTGACCCGCGATGATGACAGGATGCTGTTTGATATTCAGAAGTTCTATAACG 1195
Query 1468 TGGTTGTTGAGGAGCTTCCCTCAAACGTGGCTGATTTGCTGTga 1511
||||||| || ||||| || ||||||||||| ||| ||||||||
Sbjct 1196 TGGTTGTCGAAGAGCTGCCTTCAAACGTGGCCGATCTGCTGTGA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66010394585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5