BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54270.1

Length=1759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877                   2050    0.0  
  Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445                   1496    0.0  


> Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877
Length=1239

 Score = 2050 bits (1110),  Expect = 0.0
 Identities = 1196/1239 (97%), Gaps = 0/1239 (0%)
 Strand=Plus/Plus

Query  273   ATGGCAGGATCCGCACCGGAAGGAACACAATTTGATACGCGTCAGTTTGACCAGAGGCTG  332
             ||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct  1     ATGGCAGGATCTGCAGCAGAAGGTACACAATTTGATACGCGTCAGTTTGACCAGAAGCTG  60

Query  333   AATGAAGTTCTCGATGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC  392
             |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61    AATGAAGTACTCGAGGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC  120

Query  393   TTTGATGCCATGGGTTTGCAAGAGAATCTTCTTAGGGGTATCTATGCTTACGGTTTCGAA  452
             |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct  121   TTTGATGCCATGGGTTTGCAAGAGAACCTTCTCAGGGGTATCTATGCTTATGGTTTCGAA  180

Query  453   AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATC  512
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181   AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATC  240

Query  513   CAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCAG  572
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241   CAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCAG  300

Query  573   CTTGACTATGCCCTTCTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTGCT  632
             ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301   CTTGACTATACCCTTGTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTGCT  360

Query  633   CAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGACTACCAAGGTGTCAAGGTTCATGCC  692
             ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct  361   CAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGATTACCAAGGCGTCAAAGTTCATGCC  420

Query  693   TGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATGTT  752
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  421   TGTGTTGGTGGAACCAGCGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATGTT  480

Query  753   GTCGTTGGAACTCCCGGTCGTGTTTTTGACATGCTTAGAAGACAATCTCTCCGCCCTGAC  812
             || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| 
Sbjct  481   GTGGTTGGAACTCCCGGTCGTGTGTTTGACATGCTTAGAAGACAATCTCTTCGCCCTGAT  540

Query  813   TGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGAT  872
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541   TGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGAT  600

Query  873   CAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCTGCG  932
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  601   CAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCAGCA  660

Query  933   ACAATGCCTCCGGAAGCTTTGGAGATCACAAGAAAATTCATGAGCAAACCAGTGAGAATC  992
             || ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct  661   ACGATGCCTCCGGAAGCTCTGGAGATCACAAGGAAATTCATGAGCAAACCAGTGAGAATC  720

Query  993   TTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGTGGAG  1052
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  721   TTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGTGGAG  780

Query  1053  AAAGAAGACTGGAAGCTTGAGACTCTCTGCGATCTCTACGAGACTCTAGCCATCACTCAG  1112
             |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  781   AAAGAAGAGTGGAAGCTCGAGACTCTCTGCGATCTCTATGAGACTCTAGCCATCACTCAG  840

Query  1113  AGTGTCATCTTTGTCAACACTCGTCGCAAGGTCGACTGGCTCACAGACAAAATGAGAAGC  1172
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  841   AGTGTCATCTTTGTCAACACTCGTCGCAAGGTCGACTGGCTCACAGACAAAATGAGAAGC  900

Query  1173  CGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACCAGAGACATCATC  1232
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  901   CGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACAAGAGACATCATC  960

Query  1233  ATGAGAGAGTTCAGGTCTGGCTCGTCTCGTGTTCTAATCACAACCGATCTCTTGGCTCGT  1292
             |||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct  961   ATGAGAGAATTCAGGTCTGGTTCTTCTCGTGTTCTAATCACGACCGATCTCTTGGCTCGT  1020

Query  1293  GGTATCGATGTGCAGCAAGTCTCTCTAGTCATAAACTTTGACCTCCCAACTCAGCCAGAG  1352
             ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1021  GGTATTGATGTGCAGCAAGTCTCTCTGGTCATAAACTTTGACCTCCCAACTCAGCCAGAG  1080

Query  1353  AATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGATTAAC  1412
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1081  AATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCCATTAAC  1140

Query  1413  TTTGTGACTCTTGATGATCAGAGAATGCTGTTTGATATTCAGAAATTCTACAATGTGGTT  1472
             || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| 
Sbjct  1141  TTCGTGACTCGTGATGATGATAGAATGCTGTTTGATATTCAGAAATTCTACAATGTGGTC  1200

Query  1473  GTTGAGGAGCTTCCCTCAAACGTGGCTGATTTGCTGTga  1511
             ||||||||||||||||||||||| || ||||||||||||
Sbjct  1201  GTTGAGGAGCTTCCCTCAAACGTTGCCGATTTGCTGTGA  1239


> Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445
Length=1239

 Score = 1496 bits (810),  Expect = 0.0
 Identities = 1101/1244 (89%), Gaps = 10/1244 (1%)
 Strand=Plus/Plus

Query  273   ATGGCAGGATCCGCACCGGAAGGAACACAATTTGATACGCGTCAGTTTGACCAGAGGCTG  332
             ||||| ||||| ||||| ||||| ||||| |||||| | ||||||||||| ||||  |||
Sbjct  1     ATGGCGGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGATCAGAAACTG  60

Query  333   AATGAAGTTCTCGATGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC  392
             |||||||| || || ||||| |||||||||||||| || ||||||||||| |||||||||
Sbjct  61    AATGAAGTACTTGAGGGACAAGATGAGTTCTTCACATCTTATGATGAGGTTCATGAGAGC  120

Query  393   TTTGATGCCATGGGTTTGCAAGAGAATCTTCTTAGGGGTATCTATGCTTACGGTTTCGAA  452
             ||||||||||||||| |||||||||| ||||| |||||||| |||||||| ||||| || 
Sbjct  121   TTTGATGCCATGGGTCTGCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGGTTTTGAG  180

Query  453   AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATC  512
             |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| 
Sbjct  181   AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTCCCCTTTTGCAAAGGTCTTGATGTGATT  240

Query  513   CAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCAG  572
             || ||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct  241   CAACAGGCCCAGTCTGGTACTGGGAAAACTGCGACTTTCTGCTCTGGTGTCTTGCAGCAG  300

Query  573   CTTGAC-TATGCCCTTCTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTGC  631
             || ||| | | ||||| ||||||| |||||| | ||| | ||||| || |||||||||||
Sbjct  301   CTGGACTTCT-CCCTTGTCCAGTGTCAGGCTTTGGTTCTAGCTCCAACTAGAGAGCTTGC  359

Query  632   TCAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGACTACCAAGGTGTCAAGGTTCATGC  691
             |||||| ||||||||||||||| | ||||| ||||| ||||  |||||||||||||| ||
Sbjct  360   TCAGCAAATTGAGAAGGTCATGAGGGCCCTCGGTGATTACCTTGGTGTCAAGGTTCACGC  419

Query  692   CTGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATGT  751
             |||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||
Sbjct  420   CTGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGTATCCTCCAAGCTGGTGTCCATGT  479

Query  752   TGTCGTTGGAACTCCCGGTCGTGTTTTTGACATGCTTAGAAGA--CAATCTCTCCGCCCT  809
             ||| ||||||||||| || ||||| ||||||||| || |||||  || ||||||||  ||
Sbjct  480   TGTTGTTGGAACTCCAGGACGTGTCTTTGACATG-TT-GAAGAGGCAGTCTCTCCGTGCT  537

Query  810   GACTGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAG  869
             |||  ||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  538   GACAACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAG  597

Query  870   GATCAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCT  929
             || |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| 
Sbjct  598   GACCAGATCTATGACATATTCCAGCTTCTACCACCAAAGATCCAAGTTGGTGTGTTCTCC  657

Query  930   GCGACAATGCCTCCGGAAGCT-TTGGAGATCACAAGAAAATTCATGAGCAAACCAGTGAG  988
             || |||||||| || |||||| || ||||||||||| || ||||||||||| ||||||||
Sbjct  658   GCAACAATGCCACCAGAAGCTCTT-GAGATCACAAGGAAGTTCATGAGCAAGCCAGTGAG  716

Query  989   AATCTTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGT  1048
             |||||||||||| ||||||||||| || ||||||||||||||||| ||||| || |||||
Sbjct  717   AATCTTGGTGAAGCGTGATGAGCTGACCCTTGAAGGTATCAAGCAGTTCTATGTCAACGT  776

Query  1049  GGAGAAAGAAGACTGGAAGCTTGAGACTCTCTGCGATCTCTACGAGACTCTAGCCATCAC  1108
              ||||||||||| |||||||| ||||| || || ||||||||||||||||| ||||||||
Sbjct  777   TGAGAAAGAAGAGTGGAAGCTCGAGACACTTTGTGATCTCTACGAGACTCTGGCCATCAC  836

Query  1109  TCAGAGTGTCATCTTTGTCAACACTC-GTCGCAAGGTCGACTGGCTCACAGACAAAATGA  1167
             ||||||||||||||| || ||||| | | || ||||| || |||||||||||||||||||
Sbjct  837   TCAGAGTGTCATCTTCGTGAACAC-CAGGCGTAAGGTTGATTGGCTCACAGACAAAATGA  895

Query  1168  GAAGCCGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACCAGAGACA  1227
             |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct  896   GAAGCCGTGACCACACAGTCTCTGCAACTCACGGAGACATGGACCAGAACACCAGAGACA  955

Query  1228  TCATCATGAGAGAGTTCAGGTCTGGCTCGTCTCGTGTTCTAATCACAACCGATCTCTTGG  1287
             ||||||||||||||||||||||||| || || |||||||| ||||| || || |||||||
Sbjct  956   TCATCATGAGAGAGTTCAGGTCTGGTTCCTCCCGTGTTCTCATCACCACTGACCTCTTGG  1015

Query  1288  CTCGTGGTATCGATGTGCAGCAAGTCTCTCTAGTCATAAACTTTGACCTCCCAACTCAGC  1347
             |||||||||| ||||| || ||||||||||| || || ||||| || |||||||||||||
Sbjct  1016  CTCGTGGTATTGATGTTCAACAAGTCTCTCTGGTTATCAACTTCGATCTCCCAACTCAGC  1075

Query  1348  CAGAGAATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGA  1407
             ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1076  CAGAGAACTACCTCCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGA  1135

Query  1408  TTAACTTTGTGACTCTTGATGATCAGAGAATGCTGTTTGATATTCAGAAATTCTACAATG  1467
             | || |||||||| |  |||||| | || |||||||||||||||||||| ||||| || |
Sbjct  1136  TCAATTTTGTGACCCGCGATGATGACAGGATGCTGTTTGATATTCAGAAGTTCTATAACG  1195

Query  1468  TGGTTGTTGAGGAGCTTCCCTCAAACGTGGCTGATTTGCTGTga  1511
             ||||||| || ||||| || ||||||||||| ||| ||||||||
Sbjct  1196  TGGTTGTCGAAGAGCTGCCTTCAAACGTGGCCGATCTGCTGTGA  1239



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 66010394585


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5