BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54320.1 Length=1412 Score E Sequences producing significant alignments: (Bits) Value Ahg924165 jgi|Araly1|924165|scaffold_105446.1 1781 0.0 Ahg478636 jgi|Araly1|478636|fgenesh2_kg.3__1337__AT3G12740.1 1009 0.0 > Ahg924165 jgi|Araly1|924165|scaffold_105446.1 Length=1092 Score = 1781 bits (964), Expect = 0.0 Identities = 1034/1069 (97%), Gaps = 0/1069 (0%) Strand=Plus/Plus Query 163 CCATGAGTTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCG 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21 CCATGAGTTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCG 80 Query 223 CCGCTAGGAAGAATTCAAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAG 282 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 CCGCCAGGAAGAATTCGAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAG 140 Query 283 CTTGCAAGCCAATTCTAACCCCTGGTTGGGTCATTTCGACATTTTTGATAGTCAGTGTTA 342 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 CTTGCAAGCCAATTCTCACCCCTGGTTGGGTCATTTCGACATTTTTGATAGTCAGTGTTA 200 Query 343 TCTTTATTCCCCTTGGAGTTATCTCCCTTTTCGCTTCCCAGGATGTTGTGGAGATCGTTG 402 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 201 TCTTTATTCCCCTTGGAGTTATCTCTCTTTTCGCTTCCCAGGATGTTGTGGAGATCGTTG 260 Query 403 ATCGGTATGATACTGAGTGCATTCCGGCACCTGCTAGGACTAACAAGGTTGCATATATTC 462 | |||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 261 ACCGGTATGATACTGAATGCATTCCGGAACCTGCTAGGACTAACAAGATTGCATATATTC 320 Query 463 AAGGAGATGGAGATAAAGTTTGTAACCGGGATCTTAAAGTGACAAAGCGTATGAAGCAAC 522 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | Sbjct 321 AAGGAGATGGAGATAAAGTTTGTACCCGGGATCTTAAAGTGACAAAGCGTATGAAACAGC 380 Query 523 CTATCTATGTTTATTACCAACTTGAGAATTTCTACCAGAATCACCGAAGGTATGTAAAAA 582 || |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 381 CTGTCTATGTTTATTACCAGCTTGAGAACTTCTACCAGAATCACCGAAGGTATGTAAAAA 440 Query 583 GTCGAAGTGATTCACAGTTGAGAAGTACAAAATACGAGAATCAAATAAGTGCATGCAAGC 642 | |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 441 GCCGAAGTGATTCACAGTTGAGAAGTCCAAAATACGAGAATCAAATAAGCGCATGCAAGC 500 Query 643 CTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTTT 702 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 501 CTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTCT 560 Query 703 TTAACGACACATACGCGTTATCAAGAAACAATGTAAGCCTAGCTGTGAACAAAAAAGGCA 762 |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 561 TTAATGACACATACGCCTTATCAAGAAACAATGTAAGCCTAGCTGTAAACAAAAAAGGCA 620 Query 763 TTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATTTTC 822 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 621 TTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATTTTC 680 Query 823 AAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAGAATACCGCTTAGTGAACAAG 882 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 681 AAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAAAATACCGCTTAGTGAACAAG 740 Query 883 AAGATCTCATTGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTTTACGGAA 942 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 741 AAGATCTCATCGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTTTACGGAA 800 Query 943 AGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTAAGCTGAACAACAACTACA 1002 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 801 AGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTACGCTGAAGAACAACTACA 860 Query 1003 ACACGTACAGCTTCAATGGAAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTG 1062 |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 861 ACACTTACAGTTTCAATGGGAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTG 920 Query 1063 GGAAGAACGATTTCCTTGGCATTGCTTACCTGACAGTTGGCGGGATCTGTTTCATTTTGG 1122 ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 921 GGAAGAATGATTTCCTCGGCATTGCTTACCTGACAGTTGGCGGGATCTGTTTCTTTTTGG 980 Query 1123 CCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGTCTTGGAGATCCGTCCTACT 1182 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 981 CCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGACTTGGAGATCCATCCTACT 1040 Query 1183 TGTCATGGAATAGAAATCCTGGAGGTCGGTAACAAGCTTGGAAAGGGAG 1231 ||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 1041 TGTCATGGAATAGAAATCCCGGAGGTCGGTAACAAGCTTGGAGAGGGAG 1089 > Ahg478636 jgi|Araly1|478636|fgenesh2_kg.3__1337__AT3G12740.1 Length=1451 Score = 1009 bits (546), Expect = 0.0 Identities = 879/1036 (85%), Gaps = 37/1036 (4%) Strand=Plus/Plus Query 201 GCCGGATCGGGAGATTCTTCCGCCGCTAGGAAG-AATTCAAAGCGACCCAAGTATTCGAA 259 |||||||| | ||||||||||||||| || || ||||| |||||||||||||||||||| Sbjct 225 GCCGGATCTGTAGATTCTTCCGCCGCCCGG-AGAAATTCCAAGCGACCCAAGTATTCGAA 283 Query 260 GTTCACACAGCAGGAGCTTCCAGCTTGCAAGCCAATTCTAACCCCTGGTTGGGTCATTTC 319 || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| Sbjct 284 ATTTACACAGCAGGAGCTTCCAGCTTGCAAGCCAATTCTTACGCCTGGTTGGGTGATTTC 343 Query 320 GACATTTTTGAT-AGTCAGTGTTATCTTTATTCCCCTTGGAGTTATCTCCCTTTTCGCTT 378 ||||||||||| | ||||||||||||| |||||||| |||||||| || ||||| |||| Sbjct 344 AACATTTTTGATCA-TCAGTGTTATCTTCATTCCCCTCGGAGTTATTTCACTTTTTGCTT 402 Query 379 CCCAGGATGTTGTGGAGATCGTTGATCGGTATGATACTG-AGTGCATTCCGGC-ACCTGC 436 | ||||||||||| |||||||||||||||||||||| || | ||||| || | | ||| Sbjct 403 CTCAGGATGTTGTTGAGATCGTTGATCGGTATGATAGTGCA-TGCATACCT-CTAACTGA 460 Query 437 T-AGGACTAACAAGGTTGCATATATTCAAGGAGATGGAGATAAAGT-TTGTAACCGGGAT 494 | ||| |||||||||||||||| |||||||||| |||| ||||| | ||||| |||| | Sbjct 461 TCAGG-CTAACAAGGTTGCATACATTCAAGGAGCTGGAAATAAA-TCTTGTACCCGG-AC 517 Query 495 -CTTAAAGTGACAAAGCGTATGAAGCAACCTATCTATGTTTATTACCAACTTGAGAATTT 553 || | |||| | |||||||||||||| |||||||| || |||||||| |||||||| || Sbjct 518 GCTGATAGTGCCTAAGCGTATGAAGCAGCCTATCTACGTATATTACCAGCTTGAGAACTT 577 Query 554 CTACCAGAATCACCGAAGGTATGTAAAAAGTCGAAGTGATTCACAGTTGAGAAGTACAAA 613 ||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||| || Sbjct 578 CTACCAGAATCACCGCAGGTATGTGAAAAGCCGAAGTGATTCACAATTGAGAAGTTTGAA 637 Query 614 ATACGAGAATCAAATA-AGTGCATGCAAGCCTGAGGATGATGTTGGTGGGCAGCCGATTG 672 | | |||||||||||| | ||||||||||||||||||||||||||||||| ||| |||| Sbjct 638 AGATGAGAATCAAATAGAC-GCATGCAAGCCTGAGGATGATGTTGGTGGGCTGCCAATTG 696 Query 673 TGCCGTGTGGTCTAATTGCTTGGAGTCTTTTTAACGACACATACGCGT-TATCAAGAAAC 731 |||| ||||||||||||||||||||||| ||||| ||||||||||| | |||||||||| Sbjct 697 TGCCATGTGGTCTAATTGCTTGGAGTCTCTTTAATGACACATACGC-TCTATCAAGAAAT 755 Query 732 AATGTAAGCCT--AGCTGTGAACAAAAAAGGCATTGCATGGAAGAGTGACAAGGAACACA 789 || | || | ||| || ||||||||||| || |||||||||||||||| |||||||| Sbjct 756 AACC-A-GCGTTTAGCGGTAAACAAAAAAGGAATCGCATGGAAGAGTGACAGGGAACACA 813 Query 790 AGTTTGGGAACAAGG-TCTTCCCCAAGAATTTTCAAAAGGGGAATATCACAGGTGGTGCT 848 |||||||||| |||| | || || ||||| ||||| ||||| ||| | | |||||||| Sbjct 814 AGTTTGGGAA-AAGGGTGTTTCCTAAGAACTTTCAGAAGGGCAATCTGATTGGTGGTGCC 872 Query 849 ACTTTAGATCCAAGA-ATACCGCTT-AGTGAACAAGAAGATCTCATTGTGTGGATGAGAA 906 | ||||||||| | | ||| || ||||| ||||| ||||| || ||||||||||| | Sbjct 873 GGTCTAGATCCAA-ATACACCA-TTGAGTGACCAAGAGGATCTGATCGTGTGGATGAGGA 930 Query 907 CCGCAGCATTGCCAACATTTAGAAAACTT-TACGGAAAGATAGAGTCTGACCTCGAGATG 965 | ||||| |||||||||||||||||| || ||||| ||||||||| |||| | |||| | Sbjct 931 CTGCAGCGTTGCCAACATTTAGAAAA-TTATACGGGAAGATAGAGAGTGACTTGGAGAAG 989 Query 966 GGTGACACCATACACGTTAAGCTGAACAACAACTACAACACGTACAGCTTCAATGGAAAG 1025 ||||| | |||||| || | ||| | |||||||||||||| ||||| |||| ||| ||| Sbjct 990 GGTGATAACATACAAGTGACTCTGCAGAACAACTACAACACATACAGTTTCAGTGGGAAG 1049 Query 1026 AAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTGGGAAGAACGATTTCCTTGGCATT 1085 |||||||||||| ||||||| || |||||||| ||||| |||||||| |||||||||||| Sbjct 1050 AAGAAGCTTGTTCTGTCAACAACAAGTTGGCTTGGTGGAAAGAACGACTTCCTTGGCATT 1109 Query 1086 GCTTACCTGACAGTTGGCGGGA-TCTGTTTCATT-TTGGCCCTCGCATTTACCATCATGT 1143 |||||||| || ||||| |||| |||||||| || ||||| || ||||||||| |||||| Sbjct 1110 GCTTACCTCACTGTTGG-GGGAATCTGTTTC-TTCTTGGCACTTGCATTTACCGTCATGT 1167 Query 1144 ACCTTGTGAAACCCAGGCGTCTTGGAGATCCGT-CCTACTTGTCATGGAATAGAAATCCT 1202 | ||||||||||||||||| || || ||||| | |||||||||| ||||| |||| |||| Sbjct 1168 ATCTTGTGAAACCCAGGCGACTCGGTGATCC-TACCTACTTGTCGTGGAACAGAATTCCT 1226 Query 1203 GGAGGTCGGTAA-CAA 1217 |||||||||||| ||| Sbjct 1227 GGAGGTCGGTAAACAA 1242 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52793079570 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5