BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54340.1
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474695 jgi|Araly1|474695|fgenesh2_kg.1__4649__AT1G54340.1 2268 0.0
Ahg475696 jgi|Araly1|475696|fgenesh2_kg.2__826__AT1G65930.1 558 4e-158
> Ahg474695 jgi|Araly1|474695|fgenesh2_kg.1__4649__AT1G54340.1
Length=1518
Score = 2268 bits (1228), Expect = 0.0
Identities = 1304/1340 (97%), Gaps = 8/1340 (1%)
Strand=Plus/Plus
Query 1 AATTTCACTCGTCGATCATTACCAACCTCTGCGGGCAAAGATGGAATTCGAGAAGATCAA 60
|||||||||||||||||| | || |||||||||| |||||||||||||||||||||||
Sbjct 1 AATTTCACTCGTCGATCA-T---AAGCTCTGCGGGCGAAGATGGAATTCGAGAAGATCAA 56
Query 61 GGTGATCAATCCCGTTGTTGAAATGGATGGAGACGAAATGACTCGAGTTATCTGGAAATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 GGTGATCAATCCCGTTGTTGAAATGGATGGAGACGAAATGACTCGAGTTATCTGGAAATT 116
Query 121 CATCAAAGACAAGCTTATTTTCCCTTTCCTGGAGCTGGATATCAAATACTTTGATCTTGG 180
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 117 CATCAAAGACAAGCTTATTTTCCCTTTCGTGGAGTTGGATATCAAATACTTTGATCTTGG 176
Query 181 ACTGCCTAACCGCGATTTCACTGATGATAAGGTTACTATAGAGACTGCTGAAGCTACTTT 240
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 177 ACTGCCTAACCGCGATTTCACTGACGATAAGGTTACTATAGAGAGTGCTGAAGCTACTTT 236
Query 241 AAAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGATGAAGCTCGTGTTAGGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AAAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGATGAAGCTCGTGTTAGGGA 296
Query 301 GTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAATGGAACTATAAGGAACATTTTAAACGG 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 297 GTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAACGGAACTATAAGGAACATTTTAAACGG 356
Query 361 CACAGTTTTCAGGGAACCTATCATTTGCAGAAACATCCCTCGTCTTGTTCCAGGATGGAC 420
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 357 CACAGTTTTCAGGGAGCCTATCATTTGCAGAAACATTCCTCGTATTGTTCCAGGATGGAC 416
Query 421 GAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAGTATAGAGCCACTGATCTCAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 GAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAGTATAGAGCCACTGATATCAT 476
Query 481 TGTCAATGAACCAGGAAAACTGAAACTAGTTTTTGAGCCAAGTGGATCTTCTCAGAAAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGTCAATGAACCAGGAAAACTGAAACTAGTTTTTGAGCCAAGTGGATCTTCTCAGAAAAC 536
Query 541 AGAATTCGAAGTCTTCAATTTCACCGGTGGAGGTGTTGCTTTAGCCATGTATAACACTGA 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 AGAATTCGAAGTCTTCAATTTCACTGGTGGAGGTGTTGCTTTAGCCATGTATAACACTGA 596
Query 601 TGAGTCTATTCGTGCATTTGCTGAGTCCTCGATGTACACAGCTTACCAGAAAAAGTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGAGTCTATTCGTGCATTTGCTGAGTCCTCGATGTACACAGCTTACCAGAAAAAGTGGCC 656
Query 661 ACTTTACCTCTCCACAAAAAACACCATCCTCAAAATATATGATGGAAGATTCAAGGATAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACTTTACCTCTCCACAAAAAACACCATCCTCAAAATATATGATGGAAGATTCAAGGATAT 716
Query 721 ATTCCAAGAAGTTTATGAAGCTAACTGGAGATCCAAGTATGAAGCAGCAGGGATATGGTA 780
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 717 ATTCCAAGAAGTTTATGAAGCTAATTGGAGATCCAAGTATGAAGCTGCAGGGATATGGTA 776
Query 781 TGAGCATCGTTTGATAGATGATATGGTTGCATATGCCATGAAAAGTGAAGGGGGTTACGT 840
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 777 TGAGCATCGTTTGATAGATGATATGGTTGCATATGCCATGAAAAGTGAGGGGGGTTATGT 836
Query 841 CTGGGCATGCAAGAATTACGATGGAGATGTACAGAGCGATTTCTTAGCCCAAGGATATGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTGGGCATGCAAGAATTACGATGGAGATGTACAGAGCGATTTCTTAGCCCAAGGATATGG 896
Query 901 ATCTCTGGGAATGATGACTTCGGTGTTGGTTTGTCCAGATGGAAAGACCATTGAAGCAGA 960
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 897 ATCTCTGGGAATGATGACGTCGGTGTTGGTTTGTCCTGATGGAAAAACCATTGAAGCAGA 956
Query 961 AGCAGCTCATGGCACAGTTACACGCCACTACAGAGTTCACCAGAAAGGTGGTGAAACAAG 1020
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 957 AGCAGCTCATGGCACAGTTACTCGCCACTACAGAGTTCACCAAAAAGGTGGTGAAACAAG 1016
Query 1021 CACCAACAGCATAGCCTCTATTTTTGCTTGGTCCAGAGGCCTTGCCCACAGGGCAAAGCT 1080
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CACCAACAGCATAGCCTCCATTTTTGCTTGGTCCAGAGGCCTTGCCCACAGGGCAAAGCT 1076
Query 1081 GGACAGCAATGCCGCACTCTTGAGCTATACTGAGAAACTAGAAGCAGCTTGCATGGGGAC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GGACAGCAATGCCGCACTCTTGAGCTATACTGAGAAACTAGAAGCAGCTTGCATGGGGAC 1136
Query 1141 GGTGGAGTCTGGCAAAATGACCAAGGATCTAGCTCTTCTGATCCACGGAGCCAAGGTTAG 1200
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1137 GGTGGAGTCTGGCAAAATGACCAAGGATCTAGCTCTCCTGATCCACGGACCCAAGGTTAG 1196
Query 1201 GAGGGATCAGTATGTGAATACGGAAGAGTTCATTGATGCGGTGGCATGGGAGTTAAAAAG 1260
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1197 GAGGGATCAGTATGTGAATACAGAAGAGTTCATTGATGCGGTGGCATGGGAGTTAAGAAG 1256
Query 1261 AAGATTGTTAGGCAACAACTCCAGGTTGTGAGAAGAAAGAATGGAAATCTGAAAAGCAAA 1320
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1257 AAGATTGTTAGGCAAC---TCCAGGTTGTGAGAAGAA-GAATGGAAATCTGAAAAGCAAA 1312
Query 1321 GAGTCTCAGCAGCGTGATGT 1340
||||| |||||||| |||||
Sbjct 1313 GAGTCGCAGCAGCGCGATGT 1332
Score = 122 bits (66), Expect = 6e-27
Identities = 120/143 (84%), Gaps = 16/143 (11%)
Strand=Plus/Plus
Query 1436 GGAACTCAGATTTCCCAAAGCC--GA-GACTCACTCCTCATTGATTCGTTAAAAATTGAA 1492
|||||||||||||||||||||| || ||||||||||||||| | |||| ||| |||||
Sbjct 1385 GGAACTCAGATTTCCCAAAGCCGAGACGACTCACTCCTCATTCAAACGTTCAAATTTGAA 1444
Query 1493 TCTTTTTAGCCCTTCTTTCTCTGTATAATCTCTGTTGTAAAAGCTACCAA----TCAACA 1548
|| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1445 TC----T-----TTCTTTCTCTGTATAATCTCTGTTGTAAAAGCTACCAACCAATCAACA 1495
Query 1549 GAAATGGCTACGTTCTCGTTGTC 1571
||||||||||||||| | |||||
Sbjct 1496 GAAATGGCTACGTTCACTTTGTC 1518
> Ahg475696 jgi|Araly1|475696|fgenesh2_kg.2__826__AT1G65930.1
Length=1582
Score = 558 bits (302), Expect = 4e-158
Identities = 927/1222 (76%), Gaps = 70/1222 (6%)
Strand=Plus/Plus
Query 50 GAGAAGATCAAGGTGATC-AATCCCGTTGTTGAAATGGATGGAGACGAAATGACTCGAGT 108
||||||||||||||| | |||||| | || || |||||||| || ||||||||| | ||
Sbjct 184 GAGAAGATCAAGGTG-GCAAATCCCATCGTCGAGATGGATGGTGATGAAATGACTAGGGT 242
Query 109 TATCTGGAAATTC-ATCAAAGACAAGCTTATTTTC-CCTTTCCTGGAGCTGGATATCAAA 166
||||||| || || ||||| || ||||||| || | ||||| ||||| ||||||||||
Sbjct 243 TATCTGG-AAGTCTATCAAGGATAAGCTTA-TTACGCCTTTTGTGGAGTTGGATATCAAG 300
Query 167 TACTTTGATCTTGGACTGCCTAACCGCGATTTC-ACTGATGATAAGGTTACTATAGAGAC 225
|||||||||||||| || ||| ||||||| | | || ||||| || |||||| | || |
Sbjct 301 TACTTTGATCTTGGTCTTCCTCACCGCGA-TGCTACGGATGACAAAGTTACTGTTGAAAG 359
Query 226 TGCTGAAGCTACTTTA-AAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGATG 284
||||||||| || | | ||||| |||||||| || |||||||| || || ||||| ||||
Sbjct 360 TGCTGAAGCCAC-TAAGAAGTACAATGTGGCGATCAAGTGTGCCACCATCACTCCAGATG 418
Query 285 AA-GCTCGTGTTAGGGAGTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAATGGAACTATA 343
|| || || || | ||| || ||||| ||| | |||||||| ||||| ||||| || ||
Sbjct 419 AAGGC-CGCGTCACGGAATTTGGCTTGAAGCAGATGTGGAGAAGTCCAAATGGGACCATC 477
Query 344 AGGAACATTTTAAACGGCACAGT-TTTCAGGGAACCTATCATTTGCAGAAACATCCCT-C 401
||||| || | || || || || ||| || ||||| || || |||| ||| | |||
Sbjct 478 AGGAATATCCTGAATGGAACTGTGTTT-AGAGAACCAATTATCTGCAAAAATGTTCCTAA 536
Query 402 GTCTTGTTCCAGGATGGACGAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAGT 461
| ||||| ||||| ||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct 537 G-CTTGTCCCAGGCTGGACAAAGCCGATTTGCATTGGAAGGCATGCTTTTGGTGATCAGT 595
Query 462 ATAGAGCCACTGAT-CTC-ATTGTCAATGAACCAGGAAAACTGAA-ACT-AGTTTTTGAG 517
|| | || |||||| || | | | || | |||||||||||||| | | | ||| |||
Sbjct 596 ATCGTGCTACTGATGCTGTAAT-T-AAGGGACCAGGAAAACTGACCA-TGACCTTT-GAG 651
Query 518 CCAAGTGGATCTTCTCAGAAAACAGAATTCGAAGTCTTCA-ATTTCACCGGTGGAGGTGT 576
|| |||| |||||| ||| ||||||||| | |||| || |||| |||||
Sbjct 652 GGAAA-GGATGG-----GAAAACTGAAACCGAAGTCTTTACATTT-ACTGGTGAAGGTGG 704
Query 577 TGCTT-TA-GCCA-TGTATAACACTGATGAG-TCTATTCGTGCATTTGCTGAGTCCTCGA 632
|| || || | || |||| |||||||||||| | | | | | || | |||| | | |
Sbjct 705 TGTTTCTATGGCAATGTACAACACTGATGAGAT-TGTCC-TCCAA--GATGAG-C-TATA 758
Query 633 TGTACA-C--AGCTTACCAGAAAAAG-TGGCCACTTTACCTCTC-CACAAAAAACACCAT 687
| | | | | | ||| || | |||| |||||| || | |||||| || |||||
Sbjct 759 TCTTTATCTTATCATAC-AGTCCATCCTGGC-ACTTTATCT-TAGCACAAAGAATACCAT 815
Query 688 CCTCAA-AATATATGATGGAAGATTCAAGGATATATTCCAAGAAGTTTATGAAGCTAACT 746
|| || || ||| ||||| |||||||| || || ||||||||||| |||||||| | ||
Sbjct 816 TCTTAAGAA-ATACGATGGCAGATTCAAAGACATCTTCCAAGAAGTCTATGAAGCCAGCT 874
Query 747 GGA-GATCCAAGTATGAAGCAGCAGGGATATGGTATGAGCATCGTTTGATAGATGATATG 805
||| | || |||||||| || || || || |||||||| || ||| | || |||||||||
Sbjct 875 GGAAG-TCAAAGTATGAGGCTGCTGGAATCTGGTATGAACACCGTCTCATTGATGATATG 933
Query 806 GTTGCATATGC-CATGAAAAGTGAAGGGGGTTACGTCTGGGCATGCAAGAATTACGATGG 864
|| || || || | | || || || ||||| || || ||||| ||||| || || |||||
Sbjct 934 GTGGCCTACGCTCTT-AAGAGCGAGGGGGGCTATGTGTGGGCTTGCAAAAACTATGATGG 992
Query 865 AGATGTACAGAGCGATTTCTTAGCCCAAGGATAT-GGATCTCTGGGAATGATGACTTCGG 923
||||| || || |||||||| || ||||||| | || || || ||| ||||||| || |
Sbjct 993 TGATGTCCAAAGTGATTTCTTGGCACAAGGAT-TCGGGTCACTTGGATTGATGACATCTG 1051
Query 924 TGT-TGGTTTGTCCAGATGGAAAGACCATTGAAGCAGAAGCAGCTCATGGCACAGTTACA 982
| | |||| || || ||||||||||| |||||||| ||||| || ||||| || || ||
Sbjct 1052 T-TCTGGTCTGCCCGGATGGAAAGACGATTGAAGCTGAAGCGGCCCATGGAACTGTCACC 1110
Query 983 CGCCACTACAGAGTTCACCAGAAAGGTGGTGAAACAAGCACCAACAGCATAGCCTCTATT 1042
|| |||| ||| ||||| |||||||||||||| || ||||| |||||||||||||| ||
Sbjct 1111 CGTCACTTCAGGGTTCATCAGAAAGGTGGTGAGACCAGCACAAACAGCATAGCCTCCATC 1170
Query 1043 TTTGCTTGGTC-CAGAGGCCTTGCCCACAGGGCAAAGCTGGAC-AGCAATGCCGCACTCT 1100
||||||||| | | | || ||||| |||||||| ||| | || | ||| || |||||
Sbjct 1171 TTTGCTTGGACTC-GTGGACTTGCACACAGGGCTAAGTTAGATGA-CAACGCAAAACTCT 1228
Query 1101 TGAGCTAT-ACTGAGAAACTAGAAGCAGCTTGCATGGGGACGGTGGAGTCTGGCAAAATG 1159
|| | | | |||||||| || ||||| ||||| | ||||| |||||||| || ||||||
Sbjct 1229 TG-GATTTCACTGAGAAGCTCGAAGCCGCTTGTGTTGGGACAGTGGAGTCAGGGAAAATG 1287
Query 1160 ACCAAGGATCTAGCTCTTC-TGATCCACGGAGCCAAGGTTAGGAGGGATCAGT-ATGTGA 1217
||||| ||||| || || | | || ||||| | ||| || |||||| || | | |||
Sbjct 1288 ACCAAAGATCTTGCACT-CATCATTCACGGCTCAAAGCTTTCGAGGGA-CACTTACCTGA 1345
Query 1218 ATACGGAAGAGTTCATTGATGC 1239
| || ||||||||||| |||||
Sbjct 1346 ACACAGAAGAGTTCATCGATGC 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58849428525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5