BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54350.1
Length=2312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337713 jgi|Araly1|337713|fgenesh1_pg.C_scaffold_1004278 3360 0.0
> Ahg337713 jgi|Araly1|337713|fgenesh1_pg.C_scaffold_1004278
Length=2169
Score = 3360 bits (1819), Expect = 0.0
Identities = 1999/2084 (96%), Gaps = 20/2084 (1%)
Strand=Plus/Plus
Query 89 TTCTTCTTTGCTTCGCCATGAATCATCGATCGGAAACTTTCATCGGAAGAAAAATCCACG 148
|||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 90 TTCTTCTTCGCTTCGCCATGAATCA---ATCGGAAACTTTCATCGGAAGAAAATTCCACG 146
Query 149 TTTCAGAACCGTATCATGTTCTTCTTTGTTGCCGCAACCGTCGGTTCGTCCGGATAAGGC 208
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 147 TTTCAGAACCGTATCCTCTTCTTCTTTGTTACCGCAACCGTCGGTTCGTCCGGATAAGGC 206
Query 209 ATCGGAGTTGAAGACTCTGTGGAAGAAATTCTACAAAGTCGCGTCGCCTTATTGGTTTTC 268
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 ATCGGAGTTAAAGACTCTGTGGAAGAAATTCTACAAAGTCGCGTCGCCTTATTGGTTTTC 266
Query 269 CGAGGACAAAGACCAAGCCAGGCTTCGTCTCGCCGCCGTCTTCGCCCTTACTCTCGCCAC 328
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 267 CGAGGACAAAGACCAAGCCAGGCTTCGTCTCGCTGCCGTCTTCGCCCTAACTCTCGCCAC 326
Query 329 CACCGGCATTAGCGTCGGCTTCAATTTCCTCGGCCGTGATTTCTACAATTCTCTCGCCAA 388
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 327 CACCGGCATTAGCGTCGGCTTCAATTTCCTTGGCCGTGATTTCTACAATTCTCTCGCCAA 386
Query 389 CAAAGACCAAGAGCAATTCACCAAGCAGTTGTTCTATTACCTCTGTGCTTTCGCCGGCGG 448
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 387 CAAAGACCAAGAGCAATTCACGAAGCAGTTGTTCTATTACCTCTGTGCTTTCGCCGGCGG 446
Query 449 CATTCCGTTCTTTGTGCTACGAGATTATACAAAAGAGACTTTATCACTGAGATGGAGATC 508
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GATTCCGTTCTTTGTGCTAAGAGATTATACAAAAGAGACTTTATCACTGAGATGGAGATC 506
Query 509 ATGGATGACCAAATATTACCTGCAGCGCTATCTCAAAGATCAAACCTTTTACAAGATCCA 568
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 507 ATGGATGACCAAATATTACCTGCAGCGTTATCTGAAAGATCAAACCTTTTACAAGATCCA 566
Query 569 GTCTCAGTCTATCATCGACAATCCTGATCAGCGCCTTGTTGACGATTTGAGTTCCTTCAC 628
|||||||||||| || |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 567 GTCTCAGTCTATGATTGACAATCCAGATCAGCGCATTGTTGACGATTTGAGTTCCTTCAC 626
Query 629 TGGAACTGCCTTGTCTTTCTCTTTGACGCTTGTTAATGCCACCATTGATCTCATCTCTTT 688
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 627 TGGAACTGCCCTGTCTTTCTCTTTGACGCTTGTCAATGCCACCATTGACCTCATCTCTTT 686
Query 689 TAGCAACATCCTCTTCACCATTTATCCTCCTCTCTTTCTCGTTCTCTTGCTCTACTCCTT 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TAGCAACATCCTCTTCACCATTTATCCTCCTCTCTTTCTCGTTCTCTTGCTCTACTCCTT 746
Query 749 TGGCGGTACAGCCATCAGTGTCTTTCTTGGCAAGGGACTAGTGAATCTCAACTTTCTACA 808
|||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 747 TGGCGGAACAGCCATCAGTGTCTTTCTTGGCAAGGGATTAGTCAATCTCAACTTTCTACA 806
Query 809 AGAGAAGAAAGAGGCTGACTTTCGTTACAGCCTTGTACGAGTGAGGGAAAATGCTGAATC 868
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 807 AGAGAAGAAAGAGGCTGACTTTCGTTATAGCCTTGTACGAGTGAGGGAAAATGCTGAATC 866
Query 869 TATTGCTTTCTATGGAGGCGAACAGAATGAAATGCAGCTTCTGCTTCAGCGTTTCAGAAG 928
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 CATAGCTTTCTATGGAGGCGAACAGAATGAAATGCAGCTTCTGCTTCAGCGTTTCAGAAG 926
Query 929 CGCTTTTGATAATTTAACTGAATTGCTGATAGCATCTAGAAACCTAGAATTCTTCACCGA 988
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 927 CGCTTTTGATAATTTAACTGAATTGCTGATAGCATCCAGAAACCTAGAATTCTTCACCGA 986
Query 989 TGGATATCGCTACCTCATTCAGATTCTTCCAGTTGCTGTTGTTGCCCCAATGTATTTCTC 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 TGGATATCGCTACCTCATTCAGATTCTTCCAGTTGCTGTTGTTGCCCCAATGTATTTCTC 1046
Query 1049 CGGGAAGATTGAGTTTGGTGTCATTAACCAGTCAGTGTCTGCATTCAATCATATCCTAGG 1108
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1047 CGGGAAGATTGAGTTTGGTGTCATTAACCAGTCAGTGTCAGCATTCAATCATATCCTAGG 1106
Query 1109 AGACTTCTCGCTCGTTGTCTATCAGTTTCAAGCTATCAGCTCTTTTTCTGCTGTCATTGA 1168
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 AGACTTCTCGCTCGTTGTTTATCAGTTTCAAGCTATCAGCTCTTTTTCTGCTGTCATTGA 1166
Query 1169 TCGACTAGGTGAATTTGATGATCTTTTGGATAACAACATCTTCAGAGATCCATCTGACAC 1228
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1167 TCGACTAGGTGAATTTGATGATCTTTTGGATAACAACATCTTCAGAGATCCCTCTGGCAC 1226
Query 1229 TGTGGACGAGATTGAGCTGACATATCAGAGTGAGATGAACTCTTCACTGCTGGACACCAA 1288
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TGTGGACGAGATTGAGCTAACGTATCAGAGTGAGATGAACTCTTCACTGCTGGACACCAA 1286
Query 1289 TGGTTCAATCAAGTCCCAACCGAACCAAAAGCGTCTGGAGATCGAGGAGCTTACTCTTCA 1348
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1287 TGGTTCAATCAAGTCCCAACTGAACCAAAAGCGTCTGGAGATCGAGGAGCTTACTCTTCA 1346
Query 1349 GACACCAACAAACGGAACCACATTGGTTCACAACTTATCTGCAGATGTATATGACAAGGA 1408
||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1347 AACACCAACAAATGGAACCACATTGGTTCACAACTTATCTGTGGATATATATGACAAGGA 1406
Query 1409 TCACCTACTGATAATGGGTCCTAGTGGGAGTGGAAAAACTTCGCTGCTAAGAGCAATGGC 1468
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1407 TCATCTACTGATAATGGGTCCTAGTGGGAGTGGTAAAACTTCGCTGCTAAGAGCAATGGC 1466
Query 1469 TGGTCTTTGGAGGTCAGGGAAAGGAAAAATCACGTTCTACCTCGATCCTGAGG-TAGATT 1527
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 1467 TGGTCTTTGGAGGTCAGGGAAAGGAAAAATCACGTTCTACCTCGATTCTGAGGAT-GATT 1525
Query 1528 TTACACAGGAGAAATCTGATACTCAGGAAAATTCAGGGAAAAGA-G---GAGA--CGTAT 1581
||||||||||| ||||| |||||||||||||||||| ||||||| | | || |||||
Sbjct 1526 TTACACAGGAGGAATCTAATACTCAGGAAAATTCAGAGAAAAGAAGTTCGGGAAACGTAT 1585
Query 1582 TGTTCCTTCCACAAAGGCCTTATATGGTTCTGGGATCTTTGCGTCAGCAATTGCTTTATC 1641
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1586 TGTTCCTTCCACAAAGGCCTTATATGGTTCTGGGATCGTTGCGTCAGCAATTGCTTTATC 1645
Query 1642 CTACCTGGAGTGCAACTGTGGAGGAGACGACACCTGGTGGCAGTAATATTGACGGTTCAC 1701
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1646 CTACCTGGAGTGCAACTGTGGAGGAGGCGACACCTGGTGGCAGTAATATAGACGGTTCAC 1705
Query 1702 CACCTCTGCTGATTAGAGAGGACGGAAATGAAAAG---------CCGACAACAGATGATC 1752
||||||| ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1706 CACCTCTCCTGATTAGAGAAGACGGAAATGAAAAGTGTAATAAGCCGACAACAGATGATC 1765
Query 1753 TGATGCGGACTCTAGAGAAGGTTTGTCTTGGACATATAGCGGATCGCTTTGGTGGTCTTG 1812
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 TGATGCAGACTCTAGAGAAGGTTTGTCTTGGACATATAGCGGATCGCTTTGGTGGTCTTG 1825
Query 1813 ATTCGATACACGAGTGGTCCAGTGTTCTCTCACTTGGTGAGCAGCAGCGCCTTGCCTTTG 1872
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1826 ATTCGATACACGAGTGGTCCAGTGTTCTTTCACTTGGTGAGCAGCAGCGCCTCGCCTTTG 1885
Query 1873 CACGGTTATTGCTGTCTCAGCCAAAGCTGGCGCTCCTGGATGAATCCACCAGTGCGTTGG 1932
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 CACGGTTATTGCTTTCTCAGCCAAAGCTGGCGCTCCTGGATGAATCCACCAGTGCGTTGG 1945
Query 1933 ATGAAGCTAATGAGGCGTTCCTGTACCAGCAAATCCAGTCGGCTGGCATTACATATATAA 1992
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1946 ATGAAGCTAATGAGGCGCTCCTGTACCAGCAAATCCAGTCGGCTGGCATTACATATATAA 2005
Query 1993 GCATTGGCCACCGCCGGACTTTAACGAAATTCCATAACAAGATCTTACAAATCTCAACGG 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 GCATTGGCCACCGCCGGACTTTAACGAAATTCCATAACAAGATCTTACAAATCTCAACGG 2065
Query 2053 CAGACCCGAAGAGCAATGAACGTAACTGGCGAATAGAGGACGTGGATGCCCAAGATTCTT 2112
|||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||
Sbjct 2066 CAGACCCGAAGAGCAAGGAACGTAACTGGCGTATAGAGGACGCAGATGCCCAAGATTGTT 2125
Query 2113 TGTACGGTAGATTGAATCAAAAGGAGGTGCCAAGTGAAAGCTGA 2156
|||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 2126 TGTATGGTCGATTGAATCAAGAGGAGGTGCCAAGTGAAAGCTGA 2169
Score = 60.2 bits (32), Expect = 7e-08
Identities = 57/67 (85%), Gaps = 9/67 (13%)
Strand=Plus/Plus
Query 36 ATGATTTTGATGATAACAGCTCCCGTTT--G----T---CCTCCTCACCTTCTCCTACGC 86
|||||||||||||||||||||||||||| | | ||||||||||||||||| |||
Sbjct 1 ATGATTTTGATGATAACAGCTCCCGTTTTCGCCACTTGTCCTCCTCACCTTCTCCTCCGC 60
Query 87 CATTCTT 93
|||||||
Sbjct 61 CATTCTT 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87074300070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5