BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54430.1
Length=4920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921631 jgi|Araly1|921631|scaffold_102912.1 669 0.0
Ahg942732 jgi|Araly1|942732|scaffold_603276.1 289 2e-76
Ahg952342 jgi|Araly1|952342|scaffold_61400002.1 122 2e-26
> Ahg921631 jgi|Araly1|921631|scaffold_102912.1
Length=616
Score = 669 bits (362), Expect = 0.0
Identities = 491/551 (89%), Gaps = 17/551 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGCT 60
||||||| ||||||||||||| |||||||| |||| ||||||||||| |||||||||| |
Sbjct 21 ATGGCTGCAGTTGATGTTGTTCCAATTCCTACTAATGCAAACTATGTTGCTTTTGATGAT 80
Query 61 TTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGCT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 81 TTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGTCTACTTCGTTTTTGGGATGCT 140
Query 121 CGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAAA 180
|||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct 141 CGCAACATCAAGAAAGATGGTCAATTCATGGGGATAGTCCTCCTTTTACTCGATGAAAAA 200
Query 181 TGCTCCGTAATCCATGCTTTTATCCCAGCAGCTCTTGCTTCACATTTCCGCCAAGTTTTG 240
||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 201 TGCTCAGTAATCCATGCTTTTATCCCAGCAGCTCTTGCCTCACAATTCCGTCAAGTTTTG 260
Query 241 CGTGAAGG--CATAATCTTCAATGTTAGTGGGTTTGAAGTGGGACGTTGCACGAAAA-TC 297
|||||||| | || ||| |||| |||| ||||||||||||||||| ||||| |||| ||
Sbjct 261 CGTGAAGGTTC-TA-TCTACAATATTAGCGGGTTTGAAGTGGGACGGTGCAC-AAAACTC 317
Query 298 TACAAGATCACTGACAATCCTTTTCTCCTCCGTTTTCTCCCTGCCACAACGATTATTGAA 357
||||||||||||||| ||||||||||||| |||||||||||||||||||||| | | |||
Sbjct 318 TACAAGATCACTGACCATCCTTTTCTCCTACGTTTTCTCCCTGCCACAACGACTGTAGAA 377
Query 358 GTTTCAGATGTTGGCCCTACAATTGAGA-GTGAAAAATTTATGCTACGTAACTTTGACAA 416
||||||||||||||||||||||||| | | ||| |||| ||||||||||| ||||||||
Sbjct 378 CTTTCAGATGTTGGCCCTACAATTGA-ACGGGAACAATTCATGCTACGTAATTTTGACAA 436
Query 417 CCTTCAAGCTCTTGCTAACACCAATATTGAACTTCCTG--G-------CCAAATCACTTT 467
||| |||||||| ||||||||||| ||||||||||||| | ||||||| | ||
Sbjct 437 CCTACAAGCTCTAGCTAACACCAACATTGAACTTCCTGATGTTGTAGGCCAAATCTCCTT 496
Query 468 CGTCCAAGGGTCAAACTTGAATGATCCAACTTCTACTCAACGTTTGGTTTTGCGATACCG 527
| |||||||||| ||| ||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 497 CATCCAAGGGTCGAACCTGAATGACCCAACTTCCACTCAACGTTTGGTTTTGCGTTACCG 556
Query 528 GATTGATTCGT 538
|| ||| |||
Sbjct 557 TATCGATACGT 567
> Ahg942732 jgi|Araly1|942732|scaffold_603276.1
Length=246
Score = 289 bits (156), Expect = 2e-76
Identities = 187/202 (93%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 1 ATGGCTG-AAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGC 59
||||||| || ||||||||||| |||||||| | || ||||||||||| ||||||||||
Sbjct 21 ATGGCTGCAA-TTGATGTTGTTCCAATTCCTACCAATGCAAACTATGTTGCTTTTGATGA 79
Query 60 TTTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGC 119
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 80 TTTACGACTTGGTCGCTCTACTCAACAGGTTGTTGGTCGGCTACTTCGTTTTTGGGATGC 139
Query 120 TCGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAA 179
||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 140 TCGCAACATCAAGAAAGATGGTCAATTCATGGGGATAGTCCTCCTTTTACTCGATGAAAA 199
Query 180 ATGCTCCGTAATCCATGCTTTT 201
|||||| |||||||||||||||
Sbjct 200 ATGCTCAGTAATCCATGCTTTT 221
> Ahg952342 jgi|Araly1|952342|scaffold_61400002.1
Length=646
Score = 122 bits (66), Expect = 2e-26
Identities = 87/97 (90%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 864 GTACTGCAAAAGAATGGGTGGTCTTATGTGTCATGTACTGGATGTAGCAGAAAATTGGAA 923
||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 225 GTACTACAAAAGAATGGGTGGTCTTATGTGTCATGTACTGGGTGTAACCGAAAATTGGAC 284
Query 924 AAAGTTGGAAATGTTTTACGCTGCTA-CAAATGTGTT 959
|| ||||| |||| |||||||||| | ||||||||||
Sbjct 285 AAGGTTGGCAATGCTTTACGCTGC-AGCAAATGTGTT 320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 186215704689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5