BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54510.1
Length=2254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474726 jgi|Araly1|474726|fgenesh2_kg.1__4680__AT1G54510.1 3094 0.0
Ahg486833 jgi|Araly1|486833|fgenesh2_kg.5__2825__AT3G63280.1 459 5e-128
> Ahg474726 jgi|Araly1|474726|fgenesh2_kg.1__4680__AT1G54510.1
Length=2163
Score = 3094 bits (1675), Expect = 0.0
Identities = 1908/2020 (94%), Gaps = 17/2020 (1%)
Strand=Plus/Plus
Query 1 CAAATTTGTCATCTTCGTCCCCACTAATCACTCTCGCAAGTATCTTTCTTCT-TT-CC-T 57
|||||||||||||||||||||||| |||||||||| ||| || ||||||||| || || |
Sbjct 1 CAAATTTGTCATCTTCGTCCCCACAAATCACTCTCCCAAATAGCTTTCTTCTCTTACCAT 60
Query 58 TAAACTCTTAAACTCTCGCCATCAGATCTTTTTCTCTGATTTCTTGGGTGAGAAAATAAC 117
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 61 T-AACTCTTAAACTCTCGCCATCAGATC--TTTCTCTGATTTCTTGGGTGAGAAAAT-A- 115
Query 118 AAAGCTAGCTAGAAATGGAACAGTATGAGTTTCTTGAGCAAATTGGAAAAGGATCTTTTG 177
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 116 AAA---AGCTAGAAATGGAACAGTATGAGATTCTTGAGCAAATTGGAAAAGGATCTTTTG 172
Query 178 GGTCAGCTCTTTTAGTGAGACATAAGCATGAGAAGAAAAAATATGTATTGAAAAAGATCC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 GGTCAGCTCTTTTAGTGAGACATAAGCATGAGAAGAAAAAATATGTATTGAAAAAGATCC 232
Query 238 GTCTTGCCCGGCAAACTCAAAGGACCAGACGATCTGCACATCAAGAGATGGAGCTTATCT 297
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 233 GTCTTGCCCGGCAAACTCAGAGGACCAGACGGTCTGCACATCAAGAGATGGAGCTTATCT 292
Query 298 CGAAAATGCGTCATCCATTTATCGTGGAATACAAAGACTCTTGGGTGGAAAAGGCTTGCT 357
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 293 CGAAAATGCGTCATCCATTTATTGTGGAATACAAAGATTCTTGGGTGGAAAAGGCTTGCT 352
Query 358 ATGTGTGCATTGTCATAGGTTATTGTGAAGGAGGAGACATGGCACAAGCTATCAAGAAAT 417
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 353 ATGTGTGCATCGTCATAGGTTATTGTGAAGGAGGGGACATGGCACAAGCTATCAAGAAAT 412
Query 418 CCAATGGTGTGCATTTT-CAGGAAGAGAAACTGTGCAAGTGGCTTGTTCAGCTCCTGATG 476
||||||| || ||||| | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 413 CCAATGGCATGTATTTTTC-GGAAGAGAAACTGTGCAAGTGGCTTGTTCAGCTTCTGATG 471
Query 477 GGCCTTGAGTACTTACATTCTAACCATATTCTTCATCGTGATGTCAAGTGTTCTAACATA 536
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GGCCTTGAGTACTTACACTCTAACCATATTCTTCATCGTGATGTCAAGTGTTCTAACATA 531
Query 537 TTCTTGACCAAAGAGCAAGATATACGCCTTGGTGATTTTGGGTTAGCCAAGATTCTAACA 596
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 532 TTCTTGACCAAAGAGCAAGATATACGCCTTGGTGATTTTGGTTTAGCCAAGATTCTAACA 591
Query 597 TCCGACGATCTCACATCCTCTGTTGTCGGGACTCCCAGCTATATGTGCCCTGAGCTTTTA 656
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 592 TCCGACAATCTCACTTCCTCCGTTGTCGGGACTCCCAGCTATATGTGCCCTGAGCTTCTA 651
Query 657 GCTGATATACCTTATGGTTCCAAATCTGACATTTGGTCTTTAGGGTGCTGTATATATGAA 716
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 652 GCTGATATACCTTATGGTTCTAAATCTGACATTTGGTCTTTAGGATGCTGTATATATGAA 711
Query 717 ATGGCTTATCTTAAGCCGGCATTTAAAGCATTTGATATGCAAGCACTGATTAATAAGATA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 ATGGCTTATCTTAAGCCGGCATTTAAAGCATTTGATATGCAAGCACTGATTAATAAGATA 771
Query 777 AACAAGACGATTGTGTCTCCGCTCCCTGCCAAATATTCTGGTCCATTCCGAGGTCTCGTC 836
||||||||||||||| ||||||||||||| |||||||||||| |||||||| |||| |||
Sbjct 772 AACAAGACGATTGTGGCTCCGCTCCCTGCAAAATATTCTGGTTCATTCCGAAGTCTTGTC 831
Query 837 AAAAGCATGCTGCGGAAAAACCCAGAAGTTCGGCCATCTGCCTCAGATTTACTTAGACAT 896
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AAAAGCATGCTGCGAAAAAACCCAGAAGTTCGGCCATCTGCCTCAGATTTACTTAGACAT 891
Query 897 CCACATCTTCAGCCTTATGTTCTGGATGTCAAGCTTAGGCTCAATAATCTTAGACGCAAA 956
|||||||||||||||||||||||||||||||| || ||||||||||| || || ||||||
Sbjct 892 CCACATCTTCAGCCTTATGTTCTGGATGTCAAACTCAGGCTCAATAACCTGAGGCGCAAA 951
Query 957 ACATTACCGCCTGAGTTGCC-GAGTTCCAAGAGGATTATGAAGAAAGCTCATTTTTCTGA 1015
|||||||||||| | | ||| || ||| |||||||||||||||| |||||||||||||||
Sbjct 952 ACATTACCGCCTCAATGGCCAGA-TTCTAAGAGGATTATGAAGAGAGCTCATTTTTCTGA 1010
Query 1016 ACCAGCTGTCACTTGTCCAGCCTTTGGAGAACGACAACATAGGTCTCTCTGGAATGACAG 1075
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1011 ACCCGCTGTCACTTGTCCAGCCTTTGGAGAACGACAACATAGTTCTCTATGGAATGACAG 1070
Query 1076 AGCTCTGAATCCAGAAGCTGAAGAAGACACTGCATCTTCTATTAAATGTATTAGTCGCAG 1135
|||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1071 AGCTTTGAATCCCGAAGCTGAAGAAGACACTGCATCTTCTATCAAATGTATAAGTCGCAG 1130
Query 1136 AATTTCAGATTTATCGATTGAGAGCAGCAGTAAAGGAACATTGATATGTAAGCAAGTTTC 1195
|||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1131 AATTACAGATTTATCAATTGAGAGCAGCAGTAAAAGAACAGTGATATGTAAGCAAGTTGC 1190
Query 1196 TTCAAGTGCATGTAAGGTCTCAAAGTATCCTCTTGCAAAATCTTCAGTGACATCCAGAAG 1255
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TTCAAGTGCTTCTAAGGTCTCAAAGTATCCTCTTGCAAAATCTTCAGTGACATCCAGAAG 1250
Query 1256 AATCATGGAAACTGGACGGAGATCCG-ACCACTTGCATCCGGTTTCAGGTGGTGGTACCA 1314
|||||||||||||||| ||| || || || |||||||||||||||||||||||||||| |
Sbjct 1251 AATCATGGAAACTGGAAGGATATTCGCAC-ACTTGCATCCGGTTTCAGGTGGTGGTACTA 1309
Query 1315 CCAGCAAGATAATTCCATCAGCTCGCCGGACTTCTCTACCACTCACGAAAAGAGCTACAA 1374
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1310 CCAGCAAGATAATTCCATCAGCTCGCCGGACTTCTCTACCACTGACGAAAAGGGCTACAA 1369
Query 1375 ACCAAGAAGTTGCAGCTTACAACCCAATAGTTGGGATCTTGCAGAATGTCAAGTCTCCAG 1434
||||||||| |||||||||||||| || |||||| |||||||||||||| ||||||||||
Sbjct 1370 ACCAAGAAGCTGCAGCTTACAACCGAACAGTTGGAATCTTGCAGAATGTGAAGTCTCCAG 1429
Query 1435 AATATTCCATTAATGAGCCACAAGTTGATAAGATTGCCATTTTTCCATTAGCTCCATATG 1494
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1430 AATATTCCATTAATGAGCCACAAGTTGATAAGATTGCCATTTTCCCATTAGCTCCATATG 1489
Query 1495 AACAAGACATCTTCTTTACTCCCATGCAAAGGAAAACATCGTCTAAAAGCTCCTCTGTCT 1554
||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||
Sbjct 1490 AACAAGACATCTTCTTTACTCCCATGCAAAGGAGAACATCTTCCAAAAGCTCCTCTGTCT 1549
Query 1555 CAGACCGCTCTATAACAAAAGACAAATGCACAGTTCAAACTCATACGACGTGGCAGGGAA 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 CAGACCGCTCTATAACAAAAGACAAATGCACAGTTCAAACTCATACGACGTGGCAGGGAA 1609
Query 1615 TCCAACTCAACATGGTAGATAACATAAGCGACGGGTCATCATCATCTGATCAGAATGCAA 1674
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1610 TCCAACTCAACATGGTAGACAACATAAGCGAAGGGTCATCATCATCTGATCAGAATGCAA 1669
Query 1675 CAGCTGGTGCATCAAGCCACACCACATCCTCTAGTTCAAGAAGATGTCGGTTTGACCCAT 1734
| ||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||
Sbjct 1670 CTGCTGGTGTATCAAGCCAGACCACATCCTCTACTACAAGAAGATGTCGGTTTGACCCAT 1729
Query 1735 CATCGTATCGTCAACGGGCTGATGCTTTGGAGGGGTTGCTTGAGTTTAGTGCCAGATTGT 1794
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1730 CATCGTATCGTCAACGGGCTGATGCTTTGGAGGGGTTACTTGAGTTTAGTGCCAGATTAT 1789
Query 1795 TACAAGAAGGGAGATATGATGAACTCAATGTATTGCTTAAGCCTTTTGGTCCAGGAAAGG 1854
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||
Sbjct 1790 TACAAGAAGGGAGATATGATGAACTCAACGTGTTGCTTAAGCCTTTTGGCCCAGGTAAGG 1849
Query 1855 TGTCTCCCAGAGAAACCGCGATATGGATCGCAAAGAGCTTGAAGGAGAATCGAGACAAGA 1914
||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1850 TGTCTCCCAGAGAAACCGCTATATGGATCGCAAAGAGCTTGAAGGAGAATCGTGAGAAGT 1909
Query 1915 CCAAAATGGTAGATCTAAATGTTTCTAGAGAGATACCACATGTGGGTCTCCTCTGACAGG 1974
| |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1910 CAAAAACGGTAAATCTAAATGTTTCTAGAGAGATACCACCTGTGGGTCTCCTCTGACAGG 1969
Query 1975 CTCCACATTGTCATAACGTTCGGTTTAGTTCGGTTTTAGC 2014
|| ||| ||||| |||||| | ||||||| ||||||||||
Sbjct 1970 CTTCACTTTGTCGTAACGTCCAGTTTAGTACGGTTTTAGC 2009
Score = 167 bits (90), Expect = 4e-40
Identities = 149/174 (86%), Gaps = 17/174 (10%)
Strand=Plus/Plus
Query 2063 AGCTAGAGTTGGTTTAGGTTTAGTTTGATGGCTGACACTTTTAAAAGATGAGTAACAGTA 2122
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2007 AGCTAGAGTTGGTTTA-G----GTTTGATGGCTGACACTTTTAAAAGATGAGTAACAGTA 2061
Query 2123 TTAGTAGGTTGCGTTGGATGGTCTTTGCTTTAGTCGAACCGGTAGCTTTGCATTTGTAAT 2182
|||||||| ||||||||||||| || |||||| |||||||||||| ||||||
Sbjct 2062 TTAGTAGG---------ATGGTCTTTGCTTGAGCCGAACCAGTAGCTTTGCATATGTAAT 2112
Query 2183 CTGTACACTTGATAGTGTTAACACCTTTTATAACTTGTATTACTATAGACTTCA 2236
||||||||| | ||||| |||| ||||||||||||||||| |||||||||||
Sbjct 2113 TTGTACACTT-A--GTGTTGACACGTTTTATAACTTGTATTAATATAGACTTCA 2163
> Ahg486833 jgi|Araly1|486833|fgenesh2_kg.5__2825__AT3G63280.1
Length=1955
Score = 459 bits (248), Expect = 5e-128
Identities = 627/805 (78%), Gaps = 46/805 (6%)
Strand=Plus/Plus
Query 132 ATGGAACAGTATG-AGTTTCTT-GAGCAAATTGGAAAAGGATCTTTTGGGTCAGCTCTT- 188
||||| | ||||| || |||| ||||| || || ||||| || ||||| || ||||||
Sbjct 168 ATGGAGCGGTATGAAG--TCTTGGAGCAGATCGGGAAAGGGTCCTTTGGCTCTGCTCTTC 225
Query 189 TTAGTGAGACATAAGCATGAGAA-G-AAAAAATATGTATTGAAAAAGATCCGTCTTGCCC 246
|| || ||||| || || |||| | || ||||| || ||||||||||| ||||| ||||
Sbjct 226 TT-GTCAGACACAAACA--AGAACGCAACAAATACGTTTTGAAAAAGATTCGTCTCGCCC 282
Query 247 GGCAAACTCAAAGGAC-CAGACGATCTGCACATCAAGAGATGGAGCTTATCTCGAAAATG 305
| || || | ||| | | | ||||| || ||||| ||||||||||| || || | |
Sbjct 283 GCCAGTCTGATAGGGCTC-GCCGATCAGCTCATCAGGAGATGGAGCTCATTTCTACTGTC 341
Query 306 CGTC-ATCCATTTATCGTGGAATACAAAGACTCTTGGGTGGAAAAGGCTTGCTATGTGTG 364
|| | |||||||| | || || |||||||| || ||||| ||||||| ||||||||||||
Sbjct 342 CG-CAATCCATTTGTTGTCGAGTACAAAGATTCATGGGTTGAAAAGGGTTGCTATGTGTG 400
Query 365 CATTGTCATAGGTTATTGTGAAGGAGGAGACATGGCACA-AG-CTATCAAGAAA-TCCA- 420
||| || || || ||||||||||| |||||||| | ||| || | || || ||| ||
Sbjct 401 CATCGTTATTGGATATTGTGAAGGCGGAGACAT-G-ACAGAGACCAT-AA-AAAGAGCAT 456
Query 421 ATGGTGTGCATTTTCAGGAAGAGAAACTGTG-CAAGTGGCTTGTTCAGCTCCTGATGGGC 479
|||||| ||||||| ||||||||||| || ||| |||||||| || ||| | || |||
Sbjct 457 GTGGTGTTCATTTTCCTGAAGAGAAACTCTGCCAA-TGGCTTGTCCAACTCTTAAT-GGC 514
Query 480 -CTTGAGTA-CTTACATTCTAACCATATTCTTCATCGTGATGTCAAGTGTTCTAACATAT 537
|| || || ||| || || |||||||||||||| || ||||||||||||||||||||||
Sbjct 515 ACTCGATTATCTT-CACTCCAACCATATTCTTCACCGCGATGTCAAGTGTTCTAACATAT 573
Query 538 TCTTGACCAAAGAGCAAGATATACGCCTTGGTGATTTTGGGTTAGCCAAGATTCTAACAT 597
||||||| ||||||||||| ||||| |||||||| ||||| | || ||||||||||| |
Sbjct 574 TCTTGACAAAAGAGCAAGACATACGGCTTGGTGACTTTGGACTCGCTAAGATTCTAACTT 633
Query 598 CCGACGATCTCACATCCTCTGTTGTCGGGACTCCCAGCTATATGTGCCCTGAGCTT-TTA 656
| || || || |||||||||||||| || ||||| ||||| ||||| ||||||||| ||
Sbjct 634 CTGATGACCTTACATCCTCTGTTGTTGGAACTCCAAGCTACATGTGTCCTGAGCTTCTT- 692
Query 657 GCTGATATACCTTATGGTTCCAAA-TCTGACATTTGGTCTTTAGGG-TGCTGTATATATG 714
||||| |||||||| || || ||| || |||||||||||||| ||| ||||| || ||||
Sbjct 693 GCTGACATACCTTACGGATC-AAAGTCAGACATTTGGTCTTT-GGGATGCTGCATGTATG 750
Query 715 AAATGGCTTATCTTAAGCCGGCATTTAAAGCATTT-GATATGCA-AGCACTGATTAATAA 772
|||||||| || ||| || |||| ||||| || ||| |||| | || |||| | ||
Sbjct 751 AAATGGCTGCTCATAAACCTCCATTCAAAGC-TTCCGATGTGCAGA-CATTGATCACCAA 808
Query 773 GATAAACAAGACGATTGTGTCTCCGCTCCCTGCCAAATATTCTGG-TCCATTCCGAGGTC 831
||| ||||| ||| || ||| | || |||| ||||| || || ||||||||| |
Sbjct 809 AATACACAAGTTGATAATGGATCCTATTCCGGCCATGTATTCCGGCTC-ATTCCGAGGCC 867
Query 832 TCGTCAAAAGCATGCTGCGGAAAAACCCAGAAGTTC-GGCCATCTGCCTCA-GATTTACT 889
| ||||||||||| || ||||||| || ||| | | ||||| ||| | | || | ||
Sbjct 868 TTATCAAAAGCATGTTGAGGAAAAATCCTGAACT-CAGGCCAAGTGC-TAACGAGCTGCT 925
Query 890 TAGAC-ATCCACATCTTCAGCCTTA 913
|| || |||| ||||||||||||||
Sbjct 926 TA-ACCATCCTCATCTTCAGCCTTA 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84865065860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5