BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54680.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314862 jgi|Araly1|314862|fgenesh1_pm.C_scaffold_1003642 789 0.0
Ahg891799 jgi|Araly1|891799|Al_scaffold_0007_3785 435 3e-121
> Ahg314862 jgi|Araly1|314862|fgenesh1_pm.C_scaffold_1003642
Length=885
Score = 789 bits (427), Expect = 0.0
Identities = 582/655 (89%), Gaps = 18/655 (3%)
Strand=Plus/Plus
Query 109 TTGGTCGTTGATTGATTCTGTCTCCAGAAGTATTGAATCTGTTTATGTCCAAGAGGATTC 168
|||||| ||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||
Sbjct 234 TTGGTCATTGATTGATTCGGTCTCTAGAAGCATTGAATCTGTTTATGTCGAAGAGGATTC 293
Query 169 AGTGAGAACATCCAAAGA-GATGGAAATTAAAACTTCACCTGAAGAAGATTGGTTCTCTG 227
|||||||| |||||||| || ||||| |||||||||||||||||||||||||||| |||
Sbjct 294 AGTGAGAATTTCCAAAGAGGA-GGAAACTAAAACTTCACCTGAAGAAGATTGGTTCGCTG 352
Query 228 TTGTTCAGCATGAATCAGGGCATTTTCTTGTTGGTTACTTGCTTGGAGTTCTCCCAAGAC 287
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 353 TTGTTCAGCATGAATCTGGGCATTTTCTTGTTGGTTACTTGCTTGGTGTTCTTCCAAGAT 412
Query 288 ACTATGAAATACCAACTTTGGAAGCTGTTAGGCAGAATGTGTCGAATGTGACCGGGAGAG 347
|||||||||||||||| ||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 413 ACTATGAAATACCAACCTTGGAAGCTGTAAGGCAGAATGTGTCGAGTGTGACAGGGAGAG 472
Query 348 TAGAATTTGTGGGGTTTGAATTCCTCAAACAAGTCGGTGCTGCAAACCAGCTTATGAAAG 407
||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 473 TAGAATTTGTGGGTTTTGAGTTCCTCAAACAAGTTGGTGCTGCAAACCAGCTAATGAAAG 532
Query 408 ATGAT-G---TCGACGGCC-AA---AT-G-A-AC-CAAGGCAATATCTCATCCAAGACAC 455
||||| | | | ||| || || | | || | |||||||||||||||||||||||
Sbjct 533 ATGATAGGGATAGCCGGATGAATCTATCGGATACTCGAGGCAATATCTCATCCAAGACAC 592
Query 456 TGAACAACTTTTCATGTGTGATACTTGGAGGAATGGTAACAGAACATATACTATTCGGAT 515
|||||||||| ||||||||||||||||||||||||||| | |||||| ||| ||||||||
Sbjct 593 TGAACAACTTCTCATGTGTGATACTTGGAGGAATGGTAGCCGAACATTTACAATTCGGAT 652
Query 516 ACTCAGAAGGGCTATACTCAGATATTGTCAAGTTGAACGATGTTCTGCGGTGGCTCGGCT 575
|||| ||||| | ||||||||| |||||||||| ||||| ||||||||||||||||| |
Sbjct 653 ACTCGGAAGGTTTCTACTCAGATGTTGTCAAGTTAAACGACGTTCTGCGGTGGCTCGGGT 712
Query 576 TCACAGAATCAGA-AAAGGAGGCTCATATCAA-ATGGGCTGTTTCCAACACTGTCTCATT 633
|||||||| |||| |||| |||||||||| || |||||||||||||||||||||||| ||
Sbjct 713 TCACAGAAACAGAGAAAG-AGGCTCATAT-AAGATGGGCTGTTTCCAACACTGTCTCCTT 770
Query 634 ATTACATTCTCACAAAGAAGCAAGAGTCTCACTTGCAGAAACCATGGCTAAAGCCAAACC 693
|||||||||||||| ||||||||||| |||||||||||| | || ||||||||||||||
Sbjct 771 ATTACATTCTCACAGCGAAGCAAGAGTTTCACTTGCAGAAGCAATTGCTAAAGCCAAACC 830
Query 694 TATTAGCACTTGTATTGAAGCCATTGAATCCGCTATTTCAACACATCAAATTTAA 748
|||| | ||||||||||||| |||||||| || ||||| | |||||||||||||
Sbjct 831 TATTGGTGCTTGTATTGAAGCAATTGAATCTGCAATTTCTAGACATCAAATTTAA 885
Score = 172 bits (93), Expect = 3e-42
Identities = 104/109 (95%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 4 AGAGTGGA-TAAAGAACTCTTAAGAGGCAATTACGAAACTGCTCTCTCACTCGTCAAACA 62
||||| || ||||||||||| ||||||||||||||||||||||||||| |||||||| ||
Sbjct 88 AGAGT-GAGTAAAGAACTCTCAAGAGGCAATTACGAAACTGCTCTCTCTCTCGTCAAGCA 146
Query 63 ACTCAAGAGCAAACATGGCTGCTTATCTGCTTTTGGCTCTGCTAAATTG 111
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 ACTCAAGAGCAAACATGGCTGCTTATCTGCTTTTGGCTCTGCTAAATTG 195
> Ahg891799 jgi|Araly1|891799|Al_scaffold_0007_3785
Length=618
Score = 435 bits (235), Expect = 3e-121
Identities = 282/305 (92%), Gaps = 2/305 (1%)
Strand=Plus/Plus
Query 109 TTGGTCGTTGATTGATTCTGTCTCCAGAAGTATTGAATCTGTTTATGTCCAAGAGGATTC 168
|||||| ||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||
Sbjct 234 TTGGTCATTGATTGATTCGGTCTCTAGAAGCATTGAATCTGTTTATGTCGAAGAGGATTC 293
Query 169 AGTGAGAACATCCAAAGA-GATGGAAATTAAAACTTCACCTGAAGAAGATTGGTTCTCTG 227
|||||||| |||||||| || ||||| |||||||||||||||||||||||||||| |||
Sbjct 294 AGTGAGAATTTCCAAAGAGGA-GGAAACTAAAACTTCACCTGAAGAAGATTGGTTCGCTG 352
Query 228 TTGTTCAGCATGAATCAGGGCATTTTCTTGTTGGTTACTTGCTTGGAGTTCTCCCAAGAC 287
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 353 TTGTTCAGCATGAATCTGGGCATTTTCTTGTTGGTTACTTGCTTGGTGTTCTTCCAAGAT 412
Query 288 ACTATGAAATACCAACTTTGGAAGCTGTTAGGCAGAATGTGTCGAATGTGACCGGGAGAG 347
|||||||||||||||| ||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 413 ACTATGAAATACCAACCTTGGAAGCTGTAAGGCAGAATGTGTCGAGTGTGACAGGGAGAG 472
Query 348 TAGAATTTGTGGGGTTTGAATTCCTCAAACAAGTCGGTGCTGCAAACCAGCTTATGAAAG 407
||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 473 TAGAATTTGTGGGTTTTGAGTTCCTCAAACAAGTTGGTGCTGCAAACCAGCTAATGAAAG 532
Query 408 ATGAT 412
|||||
Sbjct 533 ATGAT 537
Score = 172 bits (93), Expect = 3e-42
Identities = 104/109 (95%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 4 AGAGTGGA-TAAAGAACTCTTAAGAGGCAATTACGAAACTGCTCTCTCACTCGTCAAACA 62
||||| || ||||||||||| ||||||||||||||||||||||||||| |||||||| ||
Sbjct 88 AGAGT-GAGTAAAGAACTCTCAAGAGGCAATTACGAAACTGCTCTCTCTCTCGTCAAGCA 146
Query 63 ACTCAAGAGCAAACATGGCTGCTTATCTGCTTTTGGCTCTGCTAAATTG 111
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 ACTCAAGAGCAAACATGGCTGCTTATCTGCTTTTGGCTCTGCTAAATTG 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5