BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54730.2
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474748 jgi|Araly1|474748|fgenesh2_kg.1__4702__AT1G54730.2 2318 0.0
> Ahg474748 jgi|Araly1|474748|fgenesh2_kg.1__4702__AT1G54730.2
Length=1477
Score = 2318 bits (1255), Expect = 0.0
Identities = 1402/1475 (95%), Gaps = 2/1475 (0%)
Strand=Plus/Plus
Query 1 ATGAGAGGAGAAATCGATGAAGCTAATCTTGCTCCTGAAACTTCACTTATTAACAAAGAG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 ATGAAAGGAGAAATCGATGAAGCTAATCTTGCTCCTGAAACTTCACTTATTGAGAAAGAA 60
Query 61 AATCAAGACTCATCGGCGACAATAACAACTACTCTCTTGCTCACCACTTTTGTAGCCGTG 120
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 61 AATCAAGATTCATCGGCGACAACAACAACTACTCTCTTGCTCACCACTTTTGTAGCTGTG 120
Query 121 TCTGGTTCCTTTGTCTTTGGCTCAGCTATAGGATATTCATCACCTGTTCAGTCGGATTTA 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 TCTGGTTCCTTTGTCTTTGGCTCAGCTATAGGATACTCATCACCTGTTCAGTCCGATTTA 180
Query 181 ACCAAGGAGTTGAATCTCTCTGTGGCAGAGTACTCGCTCTTCGGTTCGATTCTGACAATT 240
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 181 ACCAAGGACTTGAATCTCTCTGTGGCAGAGTATTCGCTTTTCGGTTCGATTCTGACAATT 240
Query 241 GGAGCAATGATCGGCGCAGCTATGAGTGGACGAATCGCCGATATGATAGGCAGACGAGCT 300
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 241 GGAGCAATGATCGGCGCAGCTATGAGTGGACGAATCGCTGATTTGATAGGCAGACGAGCT 300
Query 301 ACTATGGGTTTCTCGGAGATGTTTTGCATTCTCGGCTGGTTAGCAATCTACCTTTCTAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTATGGGTTTCTCGGAGATGTTTTGCATTCTCGGCTGGTTAGCAATCTACCTTTCTAAG 360
Query 361 GTTGCAATTTGGCTTGACGTTGGGAGATTCTTGGTTGGTTATGGAATGGGCGTTTTTTCG 420
|||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 361 GTTGCAGTTTGGCTTGACGTTGGGAGATTCCTGGTTGGTTATGGAATGGGCGTCCTTTCG 420
Query 421 TTTGTGGTTCCTGTATACATAGCTGAAATCACTCCTAAGGGTCTTCGTGGTGGGTTTACA 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 TTTGTGGTTCCTGTATACATAGCTGAAATCACTCCTAAGGATCTTCGTGGTGGGTTTACA 480
Query 481 ACTGTTCATCAGTTACTGATATGTTTGGGTGTCTCAGTCACATATCTCTTGGGCTCTTTT 540
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 ACTGTTCATCAGTTAATGATATGTTTGGGTGTCTCAGTCGCATATCTCTTGGGCTCTTTT 540
Query 541 ATAGGCTGGCGAATTTTAGCTTTGATCGGAATGATACCATGTGTTGTACAAATGATGGGA 600
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 541 ATAGGCTGGCGAATTTTAGCTTTGATCGGAATGGTACCATGTGTTATACAAATGATGGGA 600
Query 601 TTATTTGTCATCCCAGAGTCTCCTAGATGGTTGGCAAAAGTTGGCAAATGGGAAGAATTT 660
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 TTATTTATCATCCCAGAGTCTCCTAGATGGTTGGCAAAAGTTGGCAGATGGGAAGAATTT 660
Query 661 GAGATTGCATTGCAACGATTACGTGGTGAATCCGCAGATATTTCATATGAGTCTAATGAG 720
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 661 GAGATTGCATTGCAACGATTACGGGGTGAATCTGCAGATATTTCATATGAGTCTACTGAA 720
Query 721 ATCAAAGATTATACGCGAAGACTTACAGATTTATCAGAAGGTAGTATAGTAGATCTGTTC 780
|||||||||||||||| || ||||||| ||||||| |||||||||||| |||| ||||||
Sbjct 721 ATCAAAGATTATACGCAAAAACTTACAAATTTATCGGAAGGTAGTATACTAGACCTGTTC 780
Query 781 CAGCCACAGTATGCTAAATCTCTAGTTGTGGGAGTTGGTCTGATGGTTTTGCAACAATTT 840
|||||| ||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 781 CAGCCAAAGTATGCCAAATCTCTATTTGTGGGAGTAGGTCTGATGGTCTTGCAACAATTT 840
Query 841 GGAGGGGTTAATGGAATTGCTTTTTACGCTAGCTCTATTTTCGAATCTGCTGGGGTTTCT 900
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 841 GGAGGGGTTAATGGAATTGCGTTTTACTCTAGCTCTATTTTCGAATCTGCTGGTTTTTCT 900
Query 901 TCCAAAATTGGAATGATTGCGATGGTGGTCGTACAGATCCCTATGACAACTTTAGGTGTA 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TCCAAAATTGGAATGATTGCGATGGTGGTCGTACAAATCCCTATGACAACTTTAGGTGTA 960
Query 961 CTGTTGATGGATAAATCAGGAAGACGACCATTACTTCTAATTTCTGCTACTGGAACATGT 1020
|||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 961 GTGTTGATGGATAAATCGGGAAGAAGACCGTTACTTCTAATTTCTGCTACTGGAACATGC 1020
Query 1021 ATCGGGTGTTTCCTCGTCGGTTTATCATTTTCATTACAGTTTGTAAAGCAATTGAGTGGA 1080
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 ATCGGGTGTTTCCTCGTCGGCTTATCATTTTCATTACAGTTTGTAAAGCTATTGAGTGGA 1080
Query 1081 GATGCTTCATATCTAGCACTTACAGGCGTTTTGGTGTACACCGGATCATTTTCATTAGGG 1140
|||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1081 GATGCTTCATTTCTAGCACTTGCAGGCGTTTTGGTGTACACCGGATCGTTTTCGTTAGGG 1140
Query 1141 ATGGGTGGGATTCCTTGGGTCATTATGTCAGAGATATTTCCAATAGACATAAAAGGATCA 1200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1141 ATGGGTGGGATTCCTTGGGTCATTATGTCAGAGATATTTCCAATAGATATAAAAGGACCA 1200
Query 1201 GCCGGAAGCCTCGTGACTGTTGTTAGCTGGGTCGGATCATGGATTATATCTTTTACATTT 1260
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1201 GCCGGAAGCCTCGTGACTGTTGTTAGCTGGGTTGGATCATGGATCATATCTTTTACATTT 1260
Query 1261 AACTTTCTAATGAATTGGAATCCGGCAGGAACGTTTTATGTTTTCGCTACTGTTTGTGGG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AACTTTCTAATGAATTGGAATCCGGCAGGAACGTTTTATGTTTTCGCTACTGTTTGTGGG 1320
Query 1321 GCTACTGTTATTTTTGTAGCAAAACTCGTACCAGAAACCAAAGGTCGCACACTTGAGGAA 1380
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1321 GCTACTGTTATTTTTGTAGCAAAACTCGTACCAGAAACCATAGGTCGCACACTTGAGGAA 1380
Query 1381 ATCCAATATTCGATTGGTTATGTAGAATTGTAATGTATAGTAGTTGATTACGAGAATA-T 1439
|||||||| |||||||||||||| |||||||||||||||||| |||||||| |||| | |
Sbjct 1381 ATCCAATACTCGATTGGTTATGTGGAATTGTAATGTATAGTATTTGATTACAAGAA-ACT 1439
Query 1440 CAGTCCCTAATTATAACGATTAAAAGTAAGAtttt 1474
| || | |||||||||| |||||||||||||||
Sbjct 1440 TAATCATTTATTATAACGACTAAAAGTAAGATTTT 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5