BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54740.1 Length=1218 Score E Sequences producing significant alignments: (Bits) Value Ahg924226 jgi|Araly1|924226|scaffold_105507.1 928 0.0 > Ahg924226 jgi|Araly1|924226|scaffold_105507.1 Length=817 Score = 928 bits (502), Expect = 0.0 Identities = 686/772 (89%), Gaps = 24/772 (3%) Strand=Plus/Plus Query 51 ctctctctctTGTTACCAAGATGAGCTTCTACAAAAGAAGCTTTCACTCTTTCCTTGGCC 110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCTCTCTCTTGTTACCAAGATGAGCTTCTACAAAAGAAGCTTTCACTCTTTCCTTGGCC 60 Query 111 AAACCAACACCAAAGGGATGCCGTTTGAATCCGGTCTTGGCCATGATGAGACACAATCAC 170 |||||||||||||| |||||||||||||||||||||||||||||| ||| | | Sbjct 61 AAACCAACACCAAAACGATGCCGTTTGAATCCGGTCTTGGCCATGACGAG--GC---GA- 114 Query 171 ATGGCTTAATGTTGTGCACAGAGTATCTAGGGTTTGAGAGTTACGACATGAGGATGTCCG 230 |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 115 ATGGTTTAATGTTGTGTACAGAGTATCTAGGGTTCGAGAGTTACGACATGAGAATGTCCG 174 Query 231 ATAACGAGGTGGAGAACAAGATGACTTGTCATGCGGAGGTGGAGACCGAAAGGGTTGAAG 290 |||||||||||||||| |||||||||||||| | |||||||||||||||||||| ||| Sbjct 175 ATAACGAGGTGGAGAATAAGATGACTTGTCACGTAGAGGTGGAGACCGAAAGGGTCGAAA 234 Query 291 CAAAGAGGAGGAAGACGAAGGAGAATGTGGTGGTGC-A-AGCGCAGAAAAAACAGTTTCC 348 ||||||||||||||| ||||||||||||||||| || | ||| | | ||||| ||||||| Sbjct 235 CAAAGAGGAGGAAGATGAAGGAGAATGTGGTGGCGCGAGAGC-CGGGAAAAA-AGTTTCC 292 Query 349 TCCGCCTCTCTCGTCATTAAACAGCCGTGGACAGCGATATTTTTATCTCCGTCCGGTGAG 408 ||||||||||||||| || ||| |||| ||||| || | |||||||||||| |||||||| Sbjct 293 TCCGCCTCTCTCGTCGTTGAACGGCCGAGGACAACGGTCTTTTTATCTCCGGCCGGTGAG 352 Query 409 AAAAGACGGTAGATTGGAACTTACGCAAGTTATGGTCGATCGACCAGAGATTTTCCACGT 468 || || ||||||||||||||||||||||| ||| || |||||||||||||||| || | Sbjct 353 GAAGGATGGTAGATTGGAACTTACGCAAGTAATGATCAATCGACCAGAGATTTTTCATGC 412 Query 469 TTCTAGAGTAGATGGACGGTTGAGATTACATTTTGTCGATGGTGTCGAGAATCCCATTAG 528 |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 413 TTCTAGAGAAGATGGACGGTTAAGATTACATTTTGTCGATGGTGTCGAGAATCCCATAAG 472 Query 529 AGCTTATTCTGGTCCTC-AAGAAATTGTGGCCTTAGAAGAGGAACCTAAGGGTCTAGGTA 587 || || || |||||| | ||||||| || ||||||||||| |||||||||||||||||| Sbjct 473 AGGTTGTTGTGGTCC-CGAAGAAATCGTTGCCTTAGAAGACGAACCTAAGGGTCTAGGTC 531 Query 588 ATGAGAAAGAGGGAGGGGAGATTAGTAGATCTGATCTGGAATGTGGTAGAGAGATTAATG 647 ||||||| |||||||||||||| ||||||||||||||| |||| |||| |||||||| || Sbjct 532 ATGAGAACGAGGGAGGGGAGATAAGTAGATCTGATCTGAAATGGGGTACAGAGATTATTG 591 Query 648 AAGACGACAATGATGGTGCATGTAATCAAG-GAATGGATTTATCTATAATCAGTGATGAT 706 |||| |||||||||||||||||| || ||| | ||||||||||||| |||| ||||| Sbjct 592 AAGATGACAATGATGGTGCATGTGATGAAGTGG-TGGATTTATCTATGATCA---ATGAT 647 Query 707 AGTGGTGCAAGAA-GTTGGAGATGTAAAAGTAGTCATGATGTTTCGGTGAATAGTAATAA 765 || ||||| || ||||||||||||| | ||||||||| ||||||||||||||| |||| Sbjct 648 -GT--TGCAA-AACGTTGGAGATGTAATACTAGTCATGAGGTTTCGGTGAATAGTGATAA 703 Query 766 TGATGTTGCACATTTCCATGATGACCATGACACGAGAGAATGGATGTA-CAA 816 |||||||||||||||||||||||| ||||||||||||||||||| ||| ||| Sbjct 704 TGATGTTGCACATTTCCATGATGATCATGACACGAGAGAATGGA-GTAACAA 754 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45480639981 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5