BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54780.1
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924235 jgi|Araly1|924235|scaffold_105516.1 1522 0.0
> Ahg924235 jgi|Araly1|924235|scaffold_105516.1
Length=982
Score = 1522 bits (824), Expect = 0.0
Identities = 926/974 (95%), Gaps = 12/974 (1%)
Strand=Plus/Plus
Query 96 AAAAATGGAGACCCTTCTCTCCCCTCGTGCGCTCTCTCCTCCTCTCAATC-CCAAA-CCT 153
|||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||
Sbjct 17 AAAAATGGAGACCCTTCTCTCCCCTCGTGCTCTCTCTCCTCCTCTCAA-CTCCAAACCCT 75
Query 154 TTGTCC-CTTCACCAGACCAAACCCACTTCACATTCATTGTCTCTCTCAAAACCCACCAC 212
| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 76 CT-TCCAC-TCACCAGACCAAACCCACTTCACATTCCTTGTCTCTCTCAAAACCCACAAC 133
Query 213 CTTCTCCGGTCCTAAACACCTCTCCACCCGGTTCACTAAACCGGAATCAAGAAACTGGTT 272
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 134 CTTCTCCGGTCCTAAACACCTCTCCACCCGGTTTACTAAACCGGAATCAAGAAACTGGTT 193
Query 273 AATAGATGCAAAGCAAGGACTAGCTGCTTTAGCTTTATCTCTAACTCTCACTTTCTCACC 332
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 194 AACAGATGCAAAGCAAGGACTAGCTGCTTTAGCTTTATCTCTAACTCTCAGTTTCTCACC 253
Query 333 TGTTGGCACTGCTTTAGCCTCTGAGTTCAATATCCTCAACGATGGTCCACCTAAAGAAAC 392
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 254 TGTTGGCACTGCTTTAGCTTCTGAGTTCAATATCCTCAACGATGGTCCACCAAAAGACAC 313
Query 393 TTACGTAGTCGATGACGCTGGTGTTCTTAGTCGAGTGACGAAGTCAGATCTTAAGAAGCT 452
|||||||||||| || ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 314 TTACGTAGTCGACGATGCTGGTGTTCTAAGTCGAGTGACGAAGTCAGATCTTAAAAATCT 373
Query 453 TTTGTCTGATCTTGAATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCT 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TTTGTCTGATCTTGAATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCT 433
Query 513 CACCAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTATCCTTC 572
||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 434 CACTAGTAAAGCAGATGCGTTTGAGTATGCAGACCAAGTTTTGGAGAAATGGTATCCTTC 493
Query 573 TATTGAAGAAGGTAACAATAAGGGTATTGTTGTTTTGATAACAAGTCAGAAGGAAGGAGC 632
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 494 AATTGAAGAAGGTAACAATAAAGGTATTGTTGTTTTGATCACAAGTCAGAAGGAAGGAGC 553
Query 633 TATTACTGGTGGTCCTGCTTTTATTGAAGCTGTTGGTGAAAACATTCTTGATGCTACCGT 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TATTACTGGTGGTCCTGCTTTTATTGAAGCTGTTGGTGAAAACATTCTTGATGCTACCGT 613
Query 693 CTCCGAAAATCTTCCCGTACTAGCAACGGACGAAAAATACAACGAGGCGGTATATAGCAG 752
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 614 CTCCGAAAATCTTCCCGTACTAGCAACGGACGAAAAATACAATGAGGCGGTATATAGCAG 673
Query 753 TGCGAAAA-GGTTGGTTGCAGCTATAGACGGTCAACCAGATCCCGGGGGTCCAACCGTAA 811
||| |||| |||| ||||||||||||||||||| |||||||||||| |||||||| ||||
Sbjct 674 TGC-AAAATGGTTAGTTGCAGCTATAGACGGTCTACCAGATCCCGGTGGTCCAACAGTAA 732
Query 812 AGGATAGCAAGAGAGAATCAAATTTCAAGACGAAAGAAGAAACCGATGAGAAGCGAGGAC 871
||||||||||||||||||||||||||||||||||| ||||||| || |||||| ||||||
Sbjct 733 AGGATAGCAAGAGAGAATCAAATTTCAAGACGAAACAAGAAACAGACGAGAAGAGAGGAC 792
Query 872 AGTTCAGTCTTGTCGTTGGAGGATTACTTGTAATTGCCTTTGTAGTTCCCATGGCACAAT 931
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 793 AATTCAGTCTTGTCGTTGGAGGATTACTTGTAATTGCCTTTGTAGTTCCCATGGCACAGT 852
Query 932 ACTTTGCTTATGTCTCCAGGAAGTAAGTAAGTAAACTCGGTTCACTCTCGTAAACCAAAC 991
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 853 ACTTTGCTTATGTCTCCAGGAAGTAAGTAA--A--CTCGGTTCACTCTCGTAAACCAAAC 908
Query 992 CGATCAGGTCAGAACTTTGATTTACCTCGGTTATTTGGTTATGGTTTCTTGGTAAATTGG 1051
||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 909 CGATCAGGTCAGAACTTTGTTTTACATCGGTTATTTGGTTATGGTTTCTTGGTGAATTGG 968
Query 1052 TTTATTTGAACAAT 1065
||||||||| ||||
Sbjct 969 TTTATTTGAGCAAT 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43383879546
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5