BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54850.1
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924243 jgi|Araly1|924243|scaffold_105524.1 924 0.0
> Ahg924243 jgi|Araly1|924243|scaffold_105524.1
Length=666
Score = 924 bits (500), Expect = 0.0
Identities = 603/653 (92%), Gaps = 5/653 (1%)
Strand=Plus/Plus
Query 24 GCCGGCGACTTCTGAAACATCGTCTCCGATGAGGTCTTCAAGTGGTCTAAATGGGATGAG 83
|||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||
Sbjct 1 GCCGGCGACTTCTG--AGAT-ATCTCCGATGAGGTCTTCAAGTGGTCAAAATGGGATGAG 57
Query 84 GGAAAACAACAGTTTTCCGGATAACACAAGGAACCCACAAATTCTTGAAGTGACTCCATT 143
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 58 AGAGAACATGAGTTTTTCGGATAACACAAGGAACCCACAAATTCTTGAAGTGACTCCGTT 117
Query 144 GAACAGTATGCCTTACATTGGTCCAGTAACTCATGCATCCATGTCGAGTAACAGGATGAA 203
||||||| |||||||||| |||||||||||||||||||| ||||||||| |||||||||
Sbjct 118 GAACAGTTTGCCTTACATCGGTCCAGTAACTCATGCATCTATGTCGAGTGGCAGGATGAA 177
Query 204 TGATAGTGTAGAGAAAGTAGGAGGGCCTGCGATGATATTTCTGCCTTCTGACTCAAGTTC 263
||| | ||||||||||||||||||||| || |||||||||||||||||||| |||| |||
Sbjct 178 TGAGAATGTAGAGAAAGTAGGAGGGCCAGCAATGATATTTCTGCCTTCTGAATCAACTTC 237
Query 264 AGAGTTTTCTAACCTTATCAGTCAAACGAAAACCGGAGTTGCTCTCACGGGAAGTGCTGC 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 AGAGTTTTCTAACCTTATCAGTCAAACGAAAACCGGAGTTGCTCTCACGGGAAGTGCAGC 297
Query 324 AATGGGGAAGATTGGACTAACGATTGGGTTGGTTGATATTGCTGAATCCGAAGACTCATA 383
|||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||
Sbjct 298 CATGGGGAAGATTGGACCAACGATTGGTTTGGTTGATATTGCTGAATGTGAAGACTCATA 357
Query 384 TTACTTTCGTGTTGCATTGCCTGGTGTTTCAAGGGATGAGAAGGAATTCAGCTGCGAAAT 443
|||||||||||| |||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 358 CTACTTTCGTGTTTCATTGCCTGGCGTGTCAAGGGATGAGAAGGACTTCAGCTGCGAAAT 417
Query 444 AGAACCAGACGGTAA-GATTATGATAAAGGGAGCAACAACGACGGGGGAGCAGACAGTTT 502
|||||| ||||| || |||| | ||||||||||||||||| |||||||| ||||| ||||
Sbjct 418 AGAACCGGACGG-AAGGATTCTAATAAAGGGAGCAACAACAACGGGGGAACAGACTGTTT 476
Query 503 GCAAACACAATCAGATCTTCAAAATGCTAACACAGAACTTATGCCCACCAGGCCACTTCA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCAAACACAATCAGATCTTCAAAATGCTAACACAGAACTTATGCCCACCAGGCCACTTCA 536
Query 563 CCATCAACTTTCAGCTTCCTGGTCCTGTGAGCAATGAAGAATTTAACGGTAATTTTGGGT 622
|||||| ||| |||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 537 CCATCAGCTTCCAGCTTCCAGGTCCTGTGAGCAATGAAGAATTCAATGGTAATTTTGGGT 596
Query 623 CAGATGGTGTACTTGAAGGCGTAGTGAAGAAGGTGTACTACGAAGACTGAACA 675
|||||||||||||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 597 CAGATGGTGTACTTGAGGGCGTAGTGAAGAAGCTGTACTACGAAGATTGAACA 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33281306541
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5