BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54920.3
Length=3226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474768 jgi|Araly1|474768|fgenesh2_kg.1__4722__AT1G54920.2 2846 0.0
> Ahg474768 jgi|Araly1|474768|fgenesh2_kg.1__4722__AT1G54920.2
Length=3102
Score = 2846 bits (1541), Expect = 0.0
Identities = 1997/2207 (90%), Gaps = 71/2207 (3%)
Strand=Plus/Plus
Query 88 AAACAATGCAATCATTGAGAAATCGCACAAGATTCAAGTGCGCAGGG-TAAGCTATCCTG 146
||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 1 AAACAATGCAATCATTGAGAAATCGTACAAGATTCAAGTGCGC-GGGATAAGCTATCCTG 59
Query 147 CGCACCCACCCAGCAACTAGGCGGAGCTTAAAACTA-CCGACTAAAACCGAAGCTTTCAA 205
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| |
Sbjct 60 CGCACCCACCCAGCAACTAGGCGGAGCTTTAAAC-AGCCGACTAAAACCGAAGCTTTC-A 117
Query 206 AATCCATCCGTTAAAAACTGGTTTCCCGATCAAATGAACGGCCTCGATTTCTTCTTCTCC 265
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AATCCATCCGTT-AAAACTGGTTTCCCGATCAAATGAACGGCCTCGATTTCTTCTTCTCC 176
Query 266 CCCTCGCCAATTGTCGATACATCCACAGGAAACAACGGCG-GGGATGATGATTGGGGAGA 324
|| ||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 177 CCTTCGCCAACCGTCGATACATCCACCGGAAACAACGGCGAGGG-TGATGATTGGGGAGA 235
Query 325 TTTCGTCGACTCTTCCGATGCTTTCGATTCAGATCGCAACGGTGCTGATTCATCACATAA 384
||||||| ||||||||| | | ||||||| |||||||| ||| | | | |||
Sbjct 236 GTTCGTCGTCTCTTCCGA-----T-G---CAGATCGAAACGGTGCCGATCCGTTGCCTAA 286
Query 385 TCGGATCGAGTCGGAGAAGAAGAGTCAGGCGAATTGGGTTACTTCTCGTGGTCCAGTGCC 444
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 287 TCGGATCGAGTCGGAGAAGAAGAGTCAGGCGAATTATGTTACTTCTCGTGGTCCGGTGCC 346
Query 445 ACTCTCTGTGTTCGGAGAAGAAGAAGAAGACGATACAGAATCAAGTGCGTCGGTTCCATC 504
||||||||| |||||||||||||||||||||||| |||||||| ||||| | ||| ||||
Sbjct 347 ACTCTCTGTATTCGGAGAAGAAGAAGAAGACGATGCAGAATCAGGTGCGCCAGTTTCATC 406
Query 505 GTTTGGATTCTCATTCGATTCGTTTTCCAGTAAACGCAATGATAGCAACGGATCTGTGAA 564
||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 407 GTTTGGATTCTCATTTGATTCGTTTTCCAGTAAACACAATGATGGCAACGGATCTGTGAA 466
Query 565 TAGAGTAGTGGATTCGAATACAAATCATACTGTTGAAATTAGTGGTTTGATCCCAAATCT 624
|||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct 467 TAGAGTAGTGAATTCGAATACGAAGCATACTGTTGAAATTAGTGGTTTGATCGCAAATCT 526
Query 625 GTATAGAAAGAACGGACATAGTGA--T-AACAATCATGGGAATTCAGGTGGATTCAATGT 681
||||||| |||||||||||||||| | || |||| |||||||||| ||||||||||||
Sbjct 527 GTATAGAGAGAACGGACATAGTGATCTAAATAATCCTGGGAATTCAAATGGATTCAATGT 586
Query 682 AGATCTCTCAAGTTCGAATCGTAAAATCGAGAATTCAGCTGTTAGCTT-G-G---A-GA- 734
||||||||||||||||||||||||||| ||||||||||||||||| || | | | ||
Sbjct 587 AGATCTCTCAAGTTCGAATCGTAAAATTGAGAATTCAGCTGTTAGTTTGGAGACTATGAG 646
Query 735 C--GAATCCTTTGAATTTGGGTACAGAAAGGTCTG-TCAAGGCGAGCAATGT-GCTGAAT 790
| |||||| ||||||||||||||||| ||||||| | |||||||||||||| || ||||
Sbjct 647 CTGGAATCCATTGAATTTGGGTACAGAGAGGTCTGAT-AAGGCGAGCAATGTGGC-GAAT 704
Query 791 TCAAGTACTATTGAGGTCACATTGGATCCAAATTATTCAGATTTGGGATTTGCCGATAAA 850
|||||| || ||| |||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct 705 TCAAGTGCTCTTGGGGTCACATTGGATCCAGATTATTCAGATATGGGCTTTGCCGAGAAA 764
Query 851 AGTGACGATGATCTTGATGGTTGGGAGTTTAAGACTGCTGAGTCTATGTTTGGAACTCTT 910
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 765 AATGACGATGATCTTGATGGTTGGGAGTTTAAGACTGCCGAGTCTATGTTTGGAACTCCA 824
Query 911 GGTGGAAGTTATAAGCAGGAGGAACGAGAGAAAGCGGT-CCA--GAATACAG-CG-GATG 965
|||||||| ||| | |||||||||||||||| || | | |||| | | | | |
Sbjct 825 GGTGGAAGCTAT-A--AGGAGGAACGAGAGAATGC--TAAAAGTGAAT-CTGTTGTGGT- 877
Query 966 T-A-AGTTCAGGTGTTTGGAGTTCACCTGCTATAAATGGAACAGGTCCAAATTTTGATAC 1023
| | | |||| | | ||||||||| | || ||||||||||||||||||||||| ||
Sbjct 878 TCAGAATTCAAGCATCTGGAGTTCA--T-ATACCAATGGAACAGGTCCAAATTTTGAAAC 934
Query 1024 TGCTAAAGTAGATGCAGTTAAGTTAGTGGCTGAACGGGAAAATGGAGATGATGACCCTTG 1083
|| |||||||||||||||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 935 TGATAAAGTAGATGCAGTTAAGTTAGTTTCTGAACAGGAAAACGGAGATGATGACCCTTG 994
Query 1084 GGACAATGGCGGATGGGAGTTTAAGGTTGCTGAAGCGA-AAGAGCCAAAGCGCGATTTAA 1142
|||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||
Sbjct 995 GGACAATGGCGGATGGGAGTTTAAGGCTGCTGAAGC-AGGAGAGCCAAAGCACGATTTAA 1053
Query 1143 CTAACAAGGAATCTAACGGCTGGGGGTTCGGATTTGGTTTTGAACCCGTTTCTAAACTTG 1202
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 1054 CAAACAAGGAATCTAACGGCTGGGAGTTCGGATTTGGTTTTGAACCCGTTTCTAAAATCG 1113
Query 1203 AAACAACCAACTCTTTTCAATCAAGTGTTGAGAAAGAGACGAAAAAGATGGAAAATGGCT 1262
|||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||
Sbjct 1114 AAACAATCAACTCTTTTCAATCAAACGTTGAGAAAGAGACGCAAAAGGTGGAAAATGGCT 1173
Query 1263 CGATTTCCTTTCCAAGCAATGGAGATGTGAATTCTGGAGGAACTTCTTGGGCCTTTAAGC 1322
||||||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||||
Sbjct 1174 CGATTTCCTTTCCAAGCAATGAAGATATGAATTCTGAAGGAACATCTTGGGCCTTTAAGC 1233
Query 1323 AGCCATCTTTGGAAATTGGAAACGAGAAAGAGGAAAAGGAAGTACAGACAGGCAAGCCCA 1382
||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1234 AGCCATCTTTGGAAACTGGAAACGAGAAAGAAGAAAAGGAAGTGCAGACAGGCAAGCCCA 1293
Query 1383 AGGGAGTCTTGCCATTGTCCTTTTTCGAGGATGAGAAATCGGAAACCTCTGACACTTTGG 1442
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1294 AGGGAGTCTTGCCATTGTCCTTTTTCGAGGATGTGAAATCGGAAACCTCTGACACTTTGG 1353
Query 1443 TTCATGAAGATAGTTTTGTTTTAGCCAGCGATTTTCCTGTGAGAGAGAAAACTAAGGCTC 1502
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 TTCATGAAGATAAATTTGTTTTAGCCAGCGATTTTCCTGTGAGAGAGAAAACTAAGGCTC 1413
Query 1503 CAAGTCCAACTGTGTCCATCAGTGACTTAATATCCAGATTATACAGTCAGGTGGAGGAGA 1562
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 1414 CAAGTCCAACTGTGTCCATTAGTGACTTAATATCAAGTTTATACAGTCAGGTGGAGGAGA 1473
Query 1563 AGAATGCTGTTAATATTTTAGAAAACTCTGCAACTGCTTCTAATGAAGTAAATGGTGAGG 1622
|||||||||||||||||| |||||| |||||||||| |||||| | |||| || ||||||
Sbjct 1474 AGAATGCTGTTAATATTTCAGAAAAGTCTGCAACTGATTCTAACGTAGTAGATAGTGAGG 1533
Query 1623 ATGATTCATGGGAATTTCAGGGCCCCAAAATGCCCATAACAGATTCAGGCATAGCAGAAG 1682
||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1534 ATGATTCATGGGAGTTTCAGGGCCCCAAAAAGCCCATAACAGATTCGGGCATAGCAGAAG 1593
Query 1683 GTGCTGATGATTTTGACAGTACTTGGGAGTTTCAAGGGCCTTCTCCAGCCTTGAAAATGT 1742
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |
Sbjct 1594 GTGCTGATGATTTTGACAGTACGTGGGAGTTTCAAGGTCCTTCTCCAGCTTTGAAAAACT 1653
Query 1743 CTGACGTCACAGAAGTTGTCGATGAGTTTGACGATGATTCATGGGAGTTTCAAGGTCCAA 1802
|||| || |||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1654 CTGATGTTACAGAAATTGTTGATGAGTTTGACGATGATTCCTGGGAGTTTCAAGGTCCAA 1713
Query 1803 CACAGCCTGTGAAAGATTCCATGTCGAGGATAGGAGATAATGGTTTGTGGGAATATAAAC 1862
||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||
Sbjct 1714 CACAGCCTGTGAAAGATACAACGTCGAGGATAGGAGATAATGGTTCGTGGGAATATAAAC 1773
Query 1863 ATAGTTCTGTCGAAAATGAAG-TTGGGAATCAATCCTCTGTTCCAAATGGTTTTGGAGAA 1921
|||||||||| |||||||||| |||| |||| | ||||||||||||||||||||||||||
Sbjct 1774 ATAGTTCTGTGGAAAATGAAGATTGG-AATCGACCCTCTGTTCCAAATGGTTTTGGAGAA 1832
Query 1922 TTGCATGATAAAAC-AGTAATTCGGATAGAGCCTAATGATTACCAAGATCTCTTTCATAA 1980
|||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1833 TTGCATGA-AAAACCAGTAATTCGGATAGAACCTAGTGATTACCAAGATCTCTTTCATAA 1891
Query 1981 GCTGAAGATTGAATTATACCACATTGCTCT-ATATCATCTCGAGAAATTAAAGGAAGCTC 2039
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 1892 GCTGAAGATTGAATTATACCACATTGCTCTGA-ACCATCTCGAGAAATTAAAGGAAGCTC 1950
Query 2040 GTGACAAGGCTGCGGATTCTGATGAAGT--T-------CAAAAATGCGACAGTGAAATCG 2090
||||||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 1951 GTGACAAGGCTGCTGATTCTGATGAAGTCCTTGAAGTTCAAAAATGCGACAGTGAAATCG 2010
Query 2091 AGGATCTGCAAAACTTGCTGAACAATGATGTTTTGATCAGTGGAGTCAACCTAGAAAGTC 2150
||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||
Sbjct 2011 AGGATCTGCAAAACTTGCTGAACAATGATGTGTTGATCCGTGGAGTCAACTTAGAAAGTC 2070
Query 2151 TTCAACCAGGATCTTCTGGCA-TGACTGAACTTTAT-AAGGCTCTCCAGGAGCCAAAGTT 2208
| |||||| |||| ||||||| | ||||||||| || || | | ||||||||||||||||
Sbjct 2071 TCCAACCAAGATCCTCTGGCAGT-ACTGAACTT-ATTAAAGTTATCCAGGAGCCAAAGTT 2128
Query 2209 TCGAGAACTTGATTCAGAAGATCTCCTGACAGAGAGATTGTTATCAG 2255
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2129 TCGACCACTTGATTCAGAAGATCTCCTGACAGAGAGATTGTTATCAG 2175
Score = 1402 bits (759), Expect = 0.0
Identities = 876/931 (94%), Gaps = 14/931 (2%)
Strand=Plus/Plus
Query 2285 GCAGAGAAGGACTGGAAATCAACAATCGAACTACTCAAACACGCCACACTGACCCTGAAG 2344
|||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||
Sbjct 2175 GCAGAGAAGGACTGGAAATCAACAATCGAATTACTCAAACACGCTACGCTGACCCTGAAG 2234
Query 2345 ATCATAAACTTGGGTTCTCTTGAGCAACAGTCGAAATACGCTTCAACTTGGTTTGAAATT 2404
||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 2235 ATCCTAAACATGGGTTCACCTGAGCAACAGTCGAAATACGCTTCAACTTGGTTTGAAATT 2294
Query 2405 TCTTCGACCTGTGCTCAAGAATTGCGACATGCTGCATCCATTTGGAAGCAGGTGATTAAA 2464
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2295 GCTTCGGCCTGTGCTCAAGAATTGCGACAAGCTGCATCCATTTGGAAGCAGGTGATTAAA 2354
Query 2465 AATGATGTCCAAGAAGAAATCCTATCTAAACCTCAAGGGAAGAGCTATGCTCTCTCAGTG 2524
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2355 TATGATGTTCAAGAAGAAATCCTATCTAAACCTCAAGGGAAGAGCTATGCTCTCTCAGTG 2414
Query 2525 GGAGAAATTTACAGAGTAGTAAAAATTCTGAGAGCATCAACCAGATTATATAAACCGTGG 2584
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 2415 GGAGAAATTTACAGAGTAGTAAAAATTCTGAGAGTATCAACCAGATTATATAAACCATGG 2474
Query 2585 ATTTTATTAGCTCCAACATCATCCAATGTGTTGGCTGTTCTGGATGAGTGTTTGAAGTTG 2644
||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 2475 ATTTTATTATCTCCAACATCATCCAATGTGTTGGCTGTTCTGGACGAGTGTGTGAAGTTG 2534
Query 2645 TGGTTGAGCTCTGGGCTAGTAGAAGCTCTGCTGAATAGTCATGACGATTCTGCCGATCAA 2704
|||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2535 TGGTTGAGCTCTGGACTAGTAGAAGCTCTGCTGAATGGTCATGACGATTCTGCTGATCAA 2594
Query 2705 CTTCTAGAATCAATCAAGTATATAAACGAAGTTGACGCTTTCACGCT-CTACACGTGCAT 2763
|||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||
Sbjct 2595 CTTCTAGAATCAATCAAGTATATAAACGAAGTTGACGCTTCCACGCTTC-ACACCTGCAT 2653
Query 2764 CACCTCAGCCACATCACCCACATGTTACATTTCTGGGCTAAATACTGACATAGTACCAGG 2823
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 2654 AACCTCAGCCACATCACCCACATGCTACATCTCTGGGCTAAATACCGACATAGTACCAGG 2713
Query 2824 AATCAAGACGGTGGAGTGGAACGGAGAGCATTACTTGCTACCTCTTGCGAATATATGGGC 2883
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2714 AATCAAGACGGTGGAGTGGAACGGAGAGCATTACTTGCTACCACTTGCGAATCTATGGGC 2773
Query 2884 CAATCTGATCAGCCGCGATCCACCGAACCTTCCTGGCCACCATTTTCCTATTGTCTCTTA 2943
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2774 TAATCTGATCAGCCGCGATCCACCGAACCTTCCTGGCCACCATTTTCCTCTTCTCTCTTA 2833
Query 2944 GAATAAAGAAGAAACATACACTACACTCATAACTCACCCGGCAAGCTATTCTCACCGCAG 3003
||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2834 GAAGAAAGAAGAAACCTACACTACACGCATAACTCACCCGGCAAGCTATTCTCACCGCAG 2893
Query 3004 AGCATTTTCGACCAAAACA-A-AT------ATACACCTATACTTATTTGTTTATAATGTT 3055
||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 2894 AGCATTTTCGACCAAAACATATATCCTTCCATACACCTATACTTATTTGTTTATAATGTT 2953
Query 3056 TGATTT-GTTTTGGTCGTTGTATTGTAATTTATA-TCGAATGGGTTTGGGTTTCATTAAT 3113
|||||| ||||||||||||||||||||||||||| | |||||||| ||| ||||||||||
Sbjct 2954 TGATTTTGTTTTGGTCGTTGTATTGTAATTTATAAT-GAATGGGTATGG-TTTCATTAAT 3011
Query 3114 TGAGAATATTCCCAGGTTTTACGGAGGATTTATTTTTGTATCGAACGAAGCAATAAGTCA 3173
|||| | ||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 3012 TGAGCACATTCCCAGGTTTTACAGATGATATATTTTTGTATCGAACGAAGCAATAAGTCA 3071
Query 3174 GTATAATGATTTCATTTATTTTTACAATGTC 3204
||||||||||||||||||||||||||||||
Sbjct 3072 ATATAATGATTTCATTTATTTTTACAATGTC 3102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121746176027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5