BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55160.3
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474571 jgi|Araly1|474571|fgenesh2_kg.1__4525__AT1G55160.1 785 0.0
Ahg899596 jgi|Araly1|899596|Al_scaffold_0004_246 183 1e-45
Ahg906509 jgi|Araly1|906509|Al_scaffold_0003_3637 178 7e-44
> Ahg474571 jgi|Araly1|474571|fgenesh2_kg.1__4525__AT1G55160.1
Length=771
Score = 785 bits (425), Expect = 0.0
Identities = 481/508 (95%), Gaps = 4/508 (1%)
Strand=Plus/Plus
Query 405 GTTATCTGTTCTTTAGAACTAAGAAAAAGGACCTAGA---TCCTGTAGTTGAAGAGACGG 461
||||||| |||||||||||||||||||||||| |||| |||| || ||||||| |
Sbjct 265 GTTATCTTTTCTTTAGAACTAAGAAAAAGGACATAGATCCTCCTCTAAACGAAGAGATAG 324
Query 462 CTGCTAAATCGAGTTCAGTTGCAGCTCCTGTTACTGTGGAAAAAACTTTGTCTTCCACAG 521
||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||
Sbjct 325 CTGCTAAATCGAGTTCAGTGGCAGCTCCTGTTAGTGTGGAAAAAACTGTGTCTTCTACAG 384
Query 522 TGGTTGCAGAGCCAGTGGTGATCAAGGCACGTGAGCCAATTCCGGAGAAACAACAACGTG 581
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 385 TGGTTGCAGAGCCAGTGGTGGTCAAGGCACGTGAGCCAATTCCAGAGAAACAACAACGTG 444
Query 582 AGCTCTTCAAATGGATGTTGGAGGagaaaaggaaagtaaatccgaaaaacgcagaagaga 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGCTCTTCAAATGGATGTTGGAGGAGAAAAGGAAAGTAAATCCGAAAAACGCAGAAGAGA 504
Query 642 agaaacggaatgacgaagagaaagCGATTCTCAAACAGTTCATCGGCTCCAAAACCATTC 701
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 505 AGAAACGGAATGACGAAGAGAAAGCGATTCTGAAACAGTTCATAGGCTCCAAAACCATTC 564
Query 702 CTACTTTCTGATTCATTAAAGTGCAGATTCTGTTGATTTTTAGTTTGGTTTCACTTCTTA 761
||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 565 CTACTTTCTGATTTATTAAAGTGCAGATTCTGTTGA-TTTTAGTTTGGTTTCAGTTCTTA 623
Query 762 CTTTGTGGATATCACATGTTTTGCTTTTGGAAAAATTGTTCGTTTCATTGTTGAAACCAG 821
|||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 624 CTTTGTGGATATCAGATGTTTTGCTTTTGGAAACTTTTTTCGTTTCATTGTTGAAACCAG 683
Query 822 TCACTTTGGTATCTTCAGTTCCAACATTGATCCATTGTCCGGTCTTGTGTTTCTGTGTCA 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 684 TCACTTTGGTATCTTCAGTTCCAACATTGATCCATTGTCCGGTCTTGTGTTTCTGTGGCA 743
Query 882 TTGTGAAACGTTGAATGCTAGAGAAAAA 909
||||||||||||||||||||||||||||
Sbjct 744 TTGTGAAACGTTGAATGCTAGAGAAAAA 771
Score = 453 bits (245), Expect = 1e-126
Identities = 270/282 (96%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 67 CGCCATGAGTGAAGAAACTCCGAAGCTTTTCACCAATAAACCCAAGAAGAAGGCCATTAT 126
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 CGCCATGAGTGAACAAACTCCGAAGCTTTTCACCAATAAACCCAAGAAGAAGGCCATTAT 61
Query 127 CGCTCAGCTTAAGCACGTTGAAGCCAATTTCAACAATCCCACCGTTCCTCCATCATCTAA 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 62 CGCTCAGCTTAAGCACGTTGAAGCCAATTTCAACAATCCCACCGTTCCTCCATCATCAAA 121
Query 187 ACCGTCTCCAGCTGCAGCAGCGGCGGCTTCGTATACGATGGGTGGTGGTTCTGTTCCTCC 246
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 122 ACCGTCTCCGGCTGCAGCAGCCGCGGCTTCGTATACTATGGGTGGTGGTTCTGTTCCTCC 181
Query 247 TCCGCCTCCTCCTAAGGAATCATTCGCTCGTAGGTACAAATATGTCTGGCCGCTTCTCCT 306
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 182 TCCGCCTCCTCCTAAGGAATCATTCGCTCGGAGGTACAAATATGTCTGGCCGCTCCTCCT 241
Query 307 TACCGTCAATCTCGCCGTCGGAGGATTTTGCTCATCTTTAGA 348
|||||||||||||||||||||||| || | || ||||||||
Sbjct 242 TACCGTCAATCTCGCCGTCGGAGG-TTAT-CTTTTCTTTAGA 281
> Ahg899596 jgi|Araly1|899596|Al_scaffold_0004_246
Length=393
Score = 183 bits (99), Expect = 1e-45
Identities = 163/193 (84%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 405 GTTATCTGTTCTTTAGA-ACTAAGAAA-AAGGACCTAGA-TCCTGTAGTTGAAGAGACGG 461
||||||| || |||| | | ||||||| || ||| |||| | |||| ||| |||| |
Sbjct 203 GTTATCTTTTTTTTA-ACATTAAGAAAGAA-GACATAGAGT-TTGTAAACGAAAAGACAG 259
Query 462 CTGCTAAAT-CGAGTTCAGTTGCAGCTCCTGTTACTGTGGAAAAAACTTTGTCTTCCACA 520
||||||||| | ||| ||||||||||||| ||| ||||||||| ||| ||||||||||
Sbjct 260 CTGCTAAATATG-GTTTAGTTGCAGCTCCTATTATTGTGGAAAAGACTGCGTCTTCCACA 318
Query 521 GTGGTTGCAGAGCCAGTGGTGATCAAGGCACGTGAGCCAATTCCGGAGAAACAACAACGT 580
||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 319 ATGGTTGCGGAGCCAGTGGTGGTCAAGGCATGTGAGCCAATTCTGGAGAAACAACAACGT 378
Query 581 GAGCTCTTCAAAT 593
|||||||||||||
Sbjct 379 GAGCTCTTCAAAT 391
> Ahg906509 jgi|Araly1|906509|Al_scaffold_0003_3637
Length=237
Score = 178 bits (96), Expect = 7e-44
Identities = 162/193 (84%), Gaps = 7/193 (4%)
Strand=Plus/Plus
Query 405 GTTATC-TGTTCTTTAGAA-CTAAGAAA-AAGGACCTAGATCCTGTAGTTGAAGAGACGG 461
|||||| | || |||| || |||||||| || ||| |||| |||| ||| |||| |
Sbjct 46 GTTATCTTTTTTTTTA-AAGCTAAGAAAGAA-GACAGAGATTTTGTAAACGAAAAGACAG 103
Query 462 CTGCTAAAT-CGAGTTCAGTTGCAGCTCCTGTTACTGTGGAAAAAACTTTGTCTTCCACA 520
||||||||| | ||| ||||||||||||| ||| ||||||||| ||| |||||||||
Sbjct 104 CTGCTAAATATG-GTTTAGTTGCAGCTCCTATTATTGTGGAAAAGACTGCATCTTCCACA 162
Query 521 GTGGTTGCAGAGCCAGTGGTGATCAAGGCACGTGAGCCAATTCCGGAGAAACAACAACGT 580
||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 163 ATGGTTGCCGAGCCAGTGGTGGTCAAGGCATGTGAGCCAATTCTGGAGAAACAACAACGT 222
Query 581 GAGCTCTTCAAAT 593
|||||||||||||
Sbjct 223 GAGCTCTTCAAAT 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5