BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55170.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474572 jgi|Araly1|474572|fgenesh2_kg.1__4526__AT1G55170.1 1653 0.0
> Ahg474572 jgi|Araly1|474572|fgenesh2_kg.1__4526__AT1G55170.1
Length=1154
Score = 1653 bits (895), Expect = 0.0
Identities = 1097/1187 (92%), Gaps = 44/1187 (4%)
Strand=Plus/Plus
Query 44 CAATTCAAGGTAGAAGACGATATCCGCTC--TG-A--AG--CAGAAGAAAAGGTAATTCT 96
||||||||||||||||||||||||||||| || | || |||||||||||||||||||
Sbjct 1 CAATTCAAGGTAGAAGACGATATCCGCTCTGTGTAGCAGAACAGAAGAAAAGGTAATTCT 60
Query 97 GAATGTCTGGAAGAAACCGGATTCACAGAGATATCCGAGACAGCTATCATGATCATCGTG 156
||||||||||||||||||||||| | | |||||| || |||||||||| ||||
Sbjct 61 GAATGTCTGGAAGAAACCGGATT--C------A-CCGAGAAAGTTATCATGATCGGCGTG 111
Query 157 ATTTACCTCCGGAGAGACCTTTTCTCCGAGGCCCTCCATTGTTACAACCTCCACCACCAT 216
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AATTACCACCGGAGAGACCTTTTCTCCGAGGCCCTCCATTGTTACAACCTCCACCACCAT 171
Query 217 CTTTGTTAGAAGATCTTCAGATACAGGAGGGTGAAATCAGAAGGCAGGATGCTGAAATCA 276
||||||||||||||| | | | | | || | |||||||||||||| |
Sbjct 172 CTTTGTTAGAAGATC-T----T-C---A----G--AT----A--CAGGATGCTGAAATTA 210
Query 277 GAAGGCTTTTGAGTGATAATCATGGACTAGCTGACGACCGAATGGTTCTGGAGAGAGAAC 336
|||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 211 GAAGGCTTTTGAATGATAATCATAGACTAGCTGACGACCGAGTGGTTCTGGAGCGAGAAC 270
Query 337 TCGTTGCTGCTAAAGAAGAGCTTCACCGAATGAATCTGATGATTTCTGATCTTCGTGCTG 396
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TCGGTGCTGCTAAAGAAGAGCTTCACCGAATGAATCTGATGATTTCTGATCTTCGTGCTG 330
Query 397 AGCAAGATCTGCAATTGAGGGAGTTTAGTGAGAAAAGGCATAAACTTGAGGGGGATGTTC 456
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 AGCAAGATCTGCAGTCGAGGGAGTTTAGTGAGAAAAGGCATAAACTTGAGGGGGATGTTC 390
Query 457 GCGCTATGGAGTCGTATAAGAAGGAGGCTTCACAGTTGCGTGGTGAAGTTCAGAAGCTGG 516
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 391 GCGCTATGGAGTCGTATAAGAAGGAGGCGTCGCAGTTGCGTGGTGAAGTTCAGAAGCTGA 450
Query 517 ATGAGATTAAACGTGAATTAAGTGGAAATGTTCAGTTGCTTAGGAAAGATTTGGCTAAAT 576
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 451 ATGAGATTAAACGTGAATTAAGTGGAAATGTTCAGATGCTTAGGAAAGATTTGGCGAAAT 510
Query 577 TGCAATCAGATAACAAGCAGATTCCTGGTATGAGAGCTGAGGTTAAAGACCTGCAGAAGG 636
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 511 TGCAATCAGATAACAAGCAGATTCCGGGTATGAGAGCTGAGGTTAAAGACCTGCAGAAGG 570
Query 637 AGCTTATGCATGCTAGAGATGCAATTGAATATGAGAAGAAGGAAAAGTTTGAGCTTATGG 696
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 571 AGCTTATGCATGCTAGAGATGCAATTGACTATGAAAAGAAGGAAAAGTTTGAGCTTATGG 630
Query 697 AGCAGCGGCAGACAATGGAAAAGAACATGGTTTCTATGGCGCGTGAAGTTGAAAAGCTAC 756
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 631 AGCAGCGGCAGACAATGGAAAAGAACATGGTTTCTATGGCCCGTGAAGTTGAAAAGCTAC 690
Query 757 GCGCAGAACTTGCTACTGTTGATAGTAGGCCGTGGGGTTTTGGTGGATCGTATGGGATGA 816
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 691 GAGCAGAACTTGCTACTGTTGATAGTAGGCCCTGGGGTTTTGGTGGATCGTATGGGATGA 750
Query 817 ATTACAACAATATGGACGGCACTTTCCGTGGCTCGTATGGCGAAAACGATACTTATTTGG 876
|||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||
Sbjct 751 ATTACAACAATATGGATGGCACTTTCCGTGGTTCTTATGGCGAAAACGATAGTTATTTGG 810
Query 877 GATCTTCGGAAAGGAGTCAATATTACAGCCATGGGTCTGGCTCGCAGAAGAAACCTCGTT 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GATCTTCGGAAAGGAGTCAATATTACAGCCATGGGTCTGGCTCGCAGAAGAAACCTCGTT 870
Query 937 TGGATCGTCATTGAAATCTA-AAATGATCTGTGGAAAAAGAATGAGGTGACGACTAAATA 995
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 871 TGGATCGTCATTGAAATCTATAAATGATCTGTGGAAAAAGAATGAGGTGACGTCTAAATA 930
Query 996 GCCCACTTCTCAATACTCCTCTGGTTGTTTGTGGGTATGCATCTACTCTAAATCTAAATG 1055
||||||||| ||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 931 GCCCACTTCGCAAAA-TCCTCTGGTTTTTTGTGGGTATGCATCTACTCTAAATCTAAATG 989
Query 1056 TTAGTTCTTCTGCTTTTTTAATAAGGCGTTATAGTTATGTAACTTAGATGGcttttt-tt 1114
|||||||||||||||| | ||||| |||| |||||| |||||||||||||||||||| ||
Sbjct 990 TTAGTTCTTCTGCTTTCTCAATAAAGCGTAATAGTTGTGTAACTTAGATGGCTTTTTATT 1049
Query 1115 ctttctttctttttAGCCAAGCTTAGATGGCTAATCTATTTCGTA-TG-TTTCAATAATT 1172
|||| | | ||||||||||| | ||||||||||||||||||| | | |||||||||||
Sbjct 1050 CTTT-TCT-TTTTTAGCCAAACCTAGATGGCTAATCTATTTCCTTCTTATTTCAATAATT 1107
Query 1173 TGACGATTTGGTTCTTCTTGCTTGCTATTAATTGTGTTCTATTATCC 1219
|||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1108 TGACGATTTGGTTCTTCTTGCTTGCTATTAGTTGTGTCCTATTATCC 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5