BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55210.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474578 jgi|Araly1|474578|fgenesh2_kg.1__4532__AT1G55210.1 1171 0.0
> Ahg474578 jgi|Araly1|474578|fgenesh2_kg.1__4532__AT1G55210.1
Length=824
Score = 1171 bits (634), Expect = 0.0
Identities = 769/832 (92%), Gaps = 17/832 (2%)
Strand=Plus/Plus
Query 18 CACACCACCTTGTTTTCTACACCACTTATGTAAACAAACCAACCATAGTAACCAAAACCA 77
|||||| |||||| |||||||| |||| ||||||||||| ||||||||||||||||||
Sbjct 1 CACACCTTCTTGTTCTCTACACCTTTTATATAAACAAACCATCCATAGTAACCAAAACCA 60
Query 78 CAACAAAACACATGGCTAAGCTCATTTTCTTCCTCGCCGTCCAAATCCTCTTTCTCGCCG 137
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 61 CAACAAAACACATGGCTAAGCTCATTTTCTTCCTCGCCGTCCAAATCCTCCTCCTCGCCG 120
Query 138 TGGTTTCTTCCGCCGGAGACGGTGAAGACTTCGCTAGAACCATGGACCGGAAACTTCTTG 197
|||||||||| |||||||| || ||||||||| |||||||||||| |||||||||||||
Sbjct 121 TGGTTTCTTCTGCCGGAGATGGCGAAGACTTCTTTAGAACCATGGATCGGAAACTTCTTG 180
Query 198 GTCTCCACAAAAAGGAGAAACTTACCCATTTCAAAGTCTATTGGCACGATATCTTAAGCG 257
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 181 GTCTCCACAAAAAGGAGAAACTAACCCATTTCAAAGTCTATTGGCACGACATCTTAAGCG 240
Query 258 GTCCGAACCCAACCTCCATCATGATACAACCACCGGTTACAAACAGTTCCTATTTTGGAG 317
||||||||||||||||||||||||| || |||||||||||||||| ||| || |||||||
Sbjct 241 GTCCGAACCCAACCTCCATCATGATCCAGCCACCGGTTACAAACACTTCATACTTTGGAG 300
Query 318 CCATCTCCATGATCGACAACGCTTTGACGGCCAAAGTTCCGATGAACTCCACGGTGTTGG 377
| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 301 CTATCTCCATGATCGACAACGCTTTGACGGCCAAGGTTCCGTTGAACTCCACGGTGTTGG 360
Query 378 GTCAGGCCCAAGGATTTTACGCCGGAGCGGCCCAAAAGGAGTTGGGTTTCCTGATGGCGA 437
| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 GCCAAGCCCAAGGGTTTTACGCCGGAGCGGCCCAAAAGGAGTTGGGTTTTCTGATGGCGA 420
Query 438 TGAACTTTGCTTTCAAGACAGGGAAATATAACGGAAGCACGATCACGATTCTTGGCAGGA 497
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 421 TGAACTTTGCTTTTAAGACAGGGAAATATAACGGAAGTACGATCACGATTCTTGGTAGGA 480
Query 498 ACACGGCGTTGTCGGAAGTCAGAGAAATGCCGATCGTCGGAGGAAGTGGGCTTTTCCGAT 557
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACACGGCGTTGTCAGAAGTCAGAGAAATGCCGATCGTCGGAGGAAGTGGGCTTTTCCGAT 540
Query 558 TTGCTAGAGGCTATGTGGAGGCTAGGACAAAGTGGATTAATCTCAAGAACGGTGATGCTA 617
|||||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct 541 TTGCTAGAGGGTATGTTGAGGCTAGGACAAAGTGGGTTAATCTCAAGAACCTTGATGCTA 600
Query 618 CTGTTGAGTATAGTTGTTACGTGTTGCATTATTGAGGTTAATTAATGATATTTTTGTC-T 676
|||||||||||||||||||||||||||||||||||||||||| ||| || |||| ||| |
Sbjct 601 CTGTTGAGTATAGTTGTTACGTGTTGCATTATTGAGGTTAAT-AAT-AT-TTTT-GTCGT 656
Query 677 TTCTCTATATTTAATTTGACTACGCAATAATTAAT-AA-AACA-G--ATTTCAATCTATT 731
|| |||||||||||||||||||||||||||||||| || || | | |||||||||||||
Sbjct 657 TTTTCTATATTTAATTTGACTACGCAATAATTAATGAATAAAACGGGATTTCAATCTATT 716
Query 732 GAGTTTTCTTAACt-ttttttttttGCATTTGGTTTAATGGTGTGTGTGGTGGACGTTGT 790
||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 GAGTTTTCTTAGTTCTTTTTTTTTTGCATTTGGTTTTATGGTGTGTGTGGTGGACGTTGT 776
Query 791 GCGGGA-GTTGTTTGTACTTTATTAAATTTATAATAAAT-ATCTAGTTTTTT 840
| |||| || | ||||| ||||| || ||||||| |||| ||||||||||||
Sbjct 777 GTGGGAAGT-GATTGTAGTTTAT-AA-TTTATAA-AAATTATCTAGTTTTTT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5