BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55360.1
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474597 jgi|Araly1|474597|fgenesh2_kg.1__4551__AT1G55360.1 2562 0.0
Ahg929096 jgi|Araly1|929096|scaffold_301553.1 1380 0.0
> Ahg474597 jgi|Araly1|474597|fgenesh2_kg.1__4551__AT1G55360.1
Length=1724
Score = 2562 bits (1387), Expect = 0.0
Identities = 1522/1588 (96%), Gaps = 6/1588 (0%)
Strand=Plus/Plus
Query 212 TTTTTGGGTGACAATGGGAGGAGTGGTGCATCTTAGCACGGCGAAGTTAGCTAGAGGTTT 271
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 141 TTTTTGGGTGACAATGGGAGGAGTGGTGCATCTTAGCACGGTGAAGTTAGCTAGAGGTTT 200
Query 272 CTTAGTGTGTTTATGTCTTTGGGGTTTTTTCTCGCTATCATACGCCGCAAGGTCCGGCGT 331
|||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 201 CTTAGTGTGTTTATTTCTTTGGGGGGTTTTCTCGCTATCATACGCTGCTAGGTCCGGCGA 260
Query 332 ATCAAAGCAGAAGTTTGAAGTGAAGAAACATTTGAACAGGCTGAACAAACCTGCTGTCAA 391
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 261 ATCAAAGCAGAAGTTTGAAGTGAAGAAGCATTTGAACAGATTGAACAAACCTGCTGTCAA 320
Query 392 AAGCATTCAGAGTTCAGATGGTGATGTGATTGACTGTGTTCCAATCTCAAAGCAACCAGC 451
|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 321 AAGCATTCAGAGCCCAGATGGTGATATTATTGACTGTGTTCCAATCTCAAAGCAACCAGC 380
Query 452 TTTTGATCATCCGTTCCTCAAAGATCACAAGATTCAGATGAAGCCTAATTACCACCCTGA 511
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||
Sbjct 381 TTTTGATCATCCGTTCCTCAAAGGTCACAAGATTCAGATGAGGCCTAATTACCATCCTGA 440
Query 512 AGGACTCTTTGATGACAACAAAGTGTCTGCTCCTAAATCAAATGAGAAAGAAGGGCATAT 571
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 441 AGGACTCTTTGATGACAACAAAGTGTCTGCTCCTAAATCAAATGAGAAAGAAATGCATAT 500
Query 572 TCCTCAGTTGTGGCATCGATATGGTAAATGTTCTGAAGGAACTATTCCCATGAGGAGGAC 631
|||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 501 CCCTCAGTTGTGGCATCGATATGGTAAATGTACTGAAGGAACCATTCCCGTGAGGAGGAC 560
Query 632 AAAGGAAGATGATGTTTTGAGAGCAAGTTCAGTTAAAAGATATGGCAAGAAGAAGCGTAG 691
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 561 AAAGGAAGATGATGTTTTGAGAGCAAGTTCTGTTAAAAGATATGGCAAGAAGAAGCGTAG 620
Query 692 AAGTGTCCCTTTACCTAAATCTGCAGAACCTGACCTTATTAACCAAAGTGGTCACCAGCA 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AAGTGTCCCTTTACCTAAATCTGCAGAACCTGACCTTATTAACCAAAGTGGTCACCAGCA 680
Query 752 TGCCATAGCTTATGTAGAAGGAGATAAGTACTATGGAGCTAAGGCTACTATAAATGTGTG 811
||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 681 TGCCATAGCTTATGTGGAAGGAGATAAGTACTATGGAGCTAAGGCGACTATTAACGTGTG 740
Query 812 GGAGCCAAAGATACAGCAGCAGAATGAGTTCAGCTTGTCACAGATATGGCTTCTTGGTGG 871
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 741 GGAGCCAAAGATACAGCAGCAGAATGAGTTCAGTTTGTCACAGATATGGCTTCTTGGTGG 800
Query 872 CTCATTCGGACAAGATCTTAATAGCATCGAAGCTGGTTGGCAGGTGAGCCCGGATCTGTA 931
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 801 CTCATTCGGACAAGATCTTAACAGCATCGAAGCTGGTTGGCAGGTGAGCCCGGATCTGTA 860
Query 932 TGGTGACAATAACACGAGACTCTTCACTTACTGGACTAGTGATGCATATCAAGCTACCGG 991
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TGGTGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCATATCAAGCTACCGG 920
Query 992 TTGCTACAATCTTCTTTGCTCCGGTTTTATTCAAATCAACAGTGACATAGCAATGGGAGC 1051
||||||||| | ||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 921 TTGCTACAACCATCTCTGCTCGGGTTTTATTCAAGTCAACAGTGACATAGCAATGGGAGC 980
Query 1052 AAGCATTTCCCCGGTCTCTGGATATCGTAACTCGCAGTACGATATCAGTATTCTGATCTG 1111
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 981 AAGCATTTCCCCGGTCTCTGGATATCGTAATTCGCAGTACGATATCAGTATTCTGATCTG 1040
Query 1112 GAAGGATCCTAAAGAGGGACACTGGTGGATGCAATTTGGGAACGGCTATGTTTTAGGCTA 1171
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1041 GAAGGATCCTAAAGAGGGACACTGGTGGATGCAATTTGGGAACGGCTATGTTTTGGGCTA 1100
Query 1172 TTGGCCATCTTTTCTCTTCTCCTACTTGACAGAAAGTGCATCGATGATTGAATGGGGAGG 1231
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1101 TTGGCCATCTTTTCTCTTCTCCTACTTAACTGAGAGTGCATCGATGATTGAATGGGGAGG 1160
Query 1232 AGAAGTCGTGAACTCACAATCAGATGGCCAGCACACTTCAACACAAATGGGCAGTGGTAA 1291
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1161 AGAAGTCGTGAACTCGCAATCAGATGGCCAGCACACTTCAACGCAGATGGGCAGTGGTCG 1220
Query 1292 ATTTCCAGAAGAAGGCTTTAGCAAAGCAAGTTACTTCAGGAACATTCAGGTGGTTGATGG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1221 ATTTCCAGAAGAAGGCTTTAGCAAAGCAAGTTACTTCAGGAACATTCAGGTAGTTGATGG 1280
Query 1352 GTCAAACAACCTCAAGGCACCTAAAGGACTTGGAACATTCACTGAACAGTCTAACTGTTA 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 GTCAAACAACCTCAAGGCACCTAAAGGACTTGGAACATTCACTGAACAGTCTAACTGTTA 1340
Query 1412 TGATGTTCAAACCGGAAGCAATGATGATTGGGGTCATTACTTTTACTATGGAGGCCCTGG 1471
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1341 TGATGTTCAAACCGGAAGCAATGATGATTGGGGCCATTACTTTTACTATGGAGGTCCTGG 1400
Query 1472 TAAAAACCAGAAGTGTCCATAAGCTAGGCTCCAAGTAGT-AGTGGCTCGTCTCTCGAGTT 1530
|||||||||||||||||||||| |||||| ||||||||| | |||||||||| |||||||
Sbjct 1401 TAAAAACCAGAAGTGTCCATAAACTAGGCACCAAGTAGTTACTGGCTCGTCTGTCGAGTT 1460
Query 1531 ATCTTGTCTTGTGAATTCACCTTGTTTCTTTCTACACACACTCACTCAAATCCGCCTTCT 1590
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1461 CTCTTGTCTTGTGAATTCACCATGTTTGTTTCTACACACACTCACTCAAATCCGCCTTCT 1520
Query 1591 TGGGTAGTTTTTAGGGATGGTTAAAGTTATGTAATGGTAAAAGTTTGGTGTCTTTTTCTC 1650
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1521 TGGGTAGTTTT-AGGGATGGTTAAAGTTATGTAATGGTAAAAGTTTGGTGTCTTTTTCCC 1579
Query 1651 CATGTAAGTAGGTGGGGAAGAAGTGGAAAGGTGTGGCTTAAGTTTCTTTGAAAACTCAGA 1710
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1580 CATGTAAGTAGGTGGGGAAGAAG---AAAGGTGTGGCTCAAGTTTCTTTGAAAACTCAGA 1636
Query 1711 AACTTTGGCCCTTAGTGTAATTTTACTTTGTCTCCTTT-GTATTGTGATTTGTTTAAACA 1769
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1637 AACTTTGGCCCTTAGTGTAATTTTACTTTGTCTCCTTTTGTATTGTGATTTGTTTAATCA 1696
Query 1770 AGTGAATGAATCTCTCTTTCTCACTCTT 1797
|||||||||||||||||||||||| |||
Sbjct 1697 AGTGAATGAATCTCTCTTTCTCACGCTT 1724
Score = 97.1 bits (52), Expect = 4e-19
Identities = 56/58 (97%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 20 AGTTCGGATTTTGATCTGTGTGGTTGGATTGTTGCAAGAACTAAACCAGACCCACCTT 77
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AGTTTGGATTTTGATCTGTGTGGTTGGATTGTTGCGAGAACTAAACCAGACCCACCTT 58
> Ahg929096 jgi|Araly1|929096|scaffold_301553.1
Length=1306
Score = 1380 bits (747), Expect = 0.0
Identities = 1116/1292 (86%), Gaps = 33/1292 (3%)
Strand=Plus/Plus
Query 219 GTGACAATGGGAGGAGTGGTGCATCTTAGCAC-GGCGAAGTT-AGCTAGAGGTTTCTTAG 276
|||||||||||| | | |||||| ||||| | || |||||| | | |||||||||||||
Sbjct 15 GTGACAATGGGA-G-CT-GTGCATTTTAGC-CTGGTGAAGTTAAAC-AGAGGTTTCTTAG 69
Query 277 TGTGTTTATGTCTTTGGGGTTTTTTCTCGCTATCATACGC--C-GCAAGGTCCGGCGT-A 332
|||||||||| || ||||| | |||||||||| | ||| | || |||| ||| |
Sbjct 70 TGTGTTTATGGCTGTGGGGGATGCTCTCGCTATCCTGCGCAGCAGCGAGGTATGGC-TCT 128
Query 333 TCAAAGCAGAAGTTTGAAGTGAAGAAACATTTGAACAGGCTGAACAAACCTGCTGTCAAA 392
|||| |||||||||||| |||||||| || ||||| ||||| ||||||||| |||| ||
Sbjct 129 TCAAGGCAGAAGTTTGAGGTGAAGAAGCACTTGAATAGGCTCAACAAACCTCCTGTTAAG 188
Query 393 AGCATTCAGAGTTCAGATGGTGATGTGATTGACTGTGTTCCAATCTCAAAGCAACCAGCT 452
| |||||||||| ||||||| ||| | || ||||||||||| ||||||||||| ||||||
Sbjct 189 ACCATTCAGAGTCCAGATGGAGATATAATCGACTGTGTTCCTATCTCAAAGCAGCCAGCT 248
Query 453 TTTGATCATCCGTTCCTCAAAGATCACAAGATTCAGATGAAGCCTAATTACCACCCTGAA 512
||||| || || ||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 249 TTTGACCACCCTTTCCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTACCACCCTGAA 308
Query 513 GGACTCTTTGATGACAACAAAGTGTCTGCTCCTAAATCAAATGAGAAAG-AAGGGCATAT 571
|| |||||||||||||| ||| || | || | ||| || | | ||||| || |||||
Sbjct 309 GGGCTCTTTGATGACAA-TAAG-GTAT-CTGCAAAACCAGAGGGGAAAGCAA-CTCATAT 364
Query 572 TCCTCAGTTGTGGCATCGATATGGTAAATGTTCTGAAGGAACTATTCCCATGAGGAGGAC 631
|||||||||||||| || ||||| |||||| |||||||||| |||||| ||||||||||
Sbjct 365 CCCTCAGTTGTGGCACCGGTATGGCAAATGTACTGAAGGAACGATTCCCGTGAGGAGGAC 424
Query 632 AAAGGAAGATGATGTTTTGAGAGCAAGTTCAGTTAAAAGATATGGCAAGAAGAAGCGTAG 691
|||||| |||||||| ||||||||||||||| | |||||||| ||||||||||||| |||
Sbjct 425 AAAGGAGGATGATGTGTTGAGAGCAAGTTCAATCAAAAGATACGGCAAGAAGAAGCATAG 484
Query 692 AAGTGTCCCT-TTACCTAAATCTGCAGAACCTGACCTTATTAACCAAAGTGGTCACCAGC 750
||| ||| || ||||||||||||||||||||||| || ||||||| |||||| ||||
Sbjct 485 GTCTGTTCCTATT-CCTAAATCTGCAGAACCTGACCTCATCAACCAAAATGGTCATCAGC 543
Query 751 ATGCCATAGCTTATGTAGAAGGAGATAAGTACTATGGAGCTAAGGCTACTATAAATGTGT 810
| |||||||||||||| ||||||||||||||||| ||||||||||| ||| | |||||||
Sbjct 544 ACGCCATAGCTTATGTGGAAGGAGATAAGTACTACGGAGCTAAGGCGACTTTGAATGTGT 603
Query 811 GGGAGCCAAAGATACAGCAGCA-GAATGAGTTCAGCTTGTCACAGATATGGCTTCTT-GG 868
||||||||||||||||| | || ||||| ||||||||||| |||||||||||| || ||
Sbjct 604 GGGAGCCAAAGATACAG-AACACAAATGAATTCAGCTTGTCGCAGATATGGCTT-TTGGG 661
Query 869 TGGCTCATTCGGACAAGATCTTAATAGCATCGAAGCTGGTTGGCAGGTGAGCCCGGATCT 928
||| || || |||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 662 TGGTTCCTTTGGACAAGATCTTAACAGCATTGAAGCTGGCTGGCAGGTGAGCCCGGATCT 721
Query 929 GTATGGTGACAATAACACGAGACTCTTCACTTACTGGACTAGTGATGCATATCAAGCTAC 988
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 722 ATATGGAGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCCTATCAAGCTAC 781
Query 989 CGGTTGCTACAATCTTCTTTGCTCCGGTTTTATTCAAATCAACAGTGACATAGCAATGGG 1048
|||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 782 CGGTTGCTACAACCATCTCTGCTCGGGTTTTATTCAAATCAACAGTGACATAGCAATGGG 841
Query 1049 AGCAAGCATTTCCCCGGTCTCTGGATATCGTAACTCGCAGTACGATATCAGTATTCTGAT 1108
|||||||||||| || ||||||||||||||||| || ||||||||||| |||||||| ||
Sbjct 842 AGCAAGCATTTCACCAGTCTCTGGATATCGTAATTCCCAGTACGATATTAGTATTCTAAT 901
Query 1109 CTGGAAGGATCCTAAA-GAGGGACACTGGTGGATGCAATTTGGGAACGGCTATGTTTTAG 1167
|||||||||||| ||| |||||||| |||||||||||||||||||| || |||||||| |
Sbjct 902 CTGGAAGGATCC-AAAGGAGGGACATTGGTGGATGCAATTTGGGAATGGGTATGTTTTGG 960
Query 1168 GCTATTGGCCATCTTTTCTCTTCTCCTACTTGACAGAAAGTGCATCGATGATTGAATGGG 1227
| || |||||||| ||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 961 GGTACTGGCCATCATTTCTCTTCTCCTACCTAACAGAAAGTGCATCGATGATCGAATGGG 1020
Query 1228 GAGGAGAAGTCGTGAACTCACAATCAGATGGCCAGCACACTTCAACACAAATGGGCAGTG 1287
|||||||||| |||||||| || ||||| ||||| ||||||| ||||| ||||| ||||
Sbjct 1021 GAGGAGAAGTTGTGAACTCGCAGTCAGAAGGCCACCACACTTGGACACAGATGGGAAGTG 1080
Query 1288 GTAAATTTCCAGAAGAAGGCTTT-AGCAAAGCAAGTTAC-TTCAGGAACATTCAGGTGGT 1345
|| | || ||||||||||| ||| ||||||||||||||| ||| |||||||||| || ||
Sbjct 1081 GTCACTTCCCAGAAGAAGG-TTTCAGCAAAGCAAGTTACTTTC-GGAACATTCAAGTCGT 1138
Query 1346 TGATGGGTCAAACAACCTCAAGGCACCTAAAGGACTTGGAACATTCACTGA-ACAGTCTA 1404
||||| || ||||||||||| ||||| |||||||| || |||||||| || | |||| |
Sbjct 1139 AGATGGATCTAACAACCTCAAAGCACCAAAAGGACTGGGTACATTCACCGAGA-AGTCCA 1197
Query 1405 ACTGTTATGATGTTCAAACCGGAAGCAATGATGATTGGGGTCATTACTTTTACTATGGAG 1464
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || |
Sbjct 1198 ACTGTTATGATGTTCAAACCGGAAGCAATGATGACTGGGGACATTACTTCTACTACGGTG 1257
Query 1465 G-CCCTGGTAAAAACCAGAAGTGTCCATAAGC 1495
| ||| ||||| ||| |||| || ||||||||
Sbjct 1258 GTCCC-GGTAAGAACAAGAACTGCCCATAAGC 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67457823895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5