BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55480.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924056 jgi|Araly1|924056|scaffold_105337.1 1714 0.0
> Ahg924056 jgi|Araly1|924056|scaffold_105337.1
Length=1086
Score = 1714 bits (928), Expect = 0.0
Identities = 1028/1077 (95%), Gaps = 4/1077 (0%)
Strand=Plus/Plus
Query 126 AAAGAATCTCACCATGTCTTTAGCTCCGAGCAGTTATCCATCTCTGTATTCTTCGCCTTC 185
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 12 AAAGAGTCTCACCATGTCTTTAGCTCCGAGCAGTTATCCATCTCTGTATTCTTCACCTTC 71
Query 186 ACTGCCAAGAACCCAGCAAACCAAGCAAAACCCTAGTTTGATCACTCAATCCAGTTTCAT 245
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 72 ACTGCCAAGAACACAGCAAACCAAGCAAAGCCCTAGTTTGATCACTCAATCCAGTTTCAT 131
Query 246 TTCCGCCAAAAGTCTCTTCCTTTCGAGCAATTCGGCTTCTTTATGCAATACCCATGTTGC 305
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 132 TTCCGCCAAAAGTCTCTTCCTTTCGAGCAATTCGAATTCTTTATGTAATACCCATGTTGC 191
Query 306 CAAACGCCGGAATTTAGCTTTGAAGGCGTCGGAGACAGAGTCTTCAGCTAAAG-CTGAAG 364
|||||||||||||||||||| ||||||||||||||||||||| | || ||| ||||||
Sbjct 192 CAAACGCCGGAATTTAGCTTCGAAGGCGTCGGAGACAGAGTCGACGGC-GAAGACTGAAG 250
Query 365 CAGGAGGAGACGGAGAAGAAGAAGAGAAGTATGAAACATATGAAATTGAAGTGGAGCAGC 424
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 251 GAGGAGGAGAAGGAGAAGAAGAAGAGAAGTATGAAACATATGAAGTTGAAGTGGAGCAGC 310
Query 425 CTTATGGTTTGAAATTCAGGAAAGGAAGAGATGGTGGCACTTACATTGATGCTATCTTAC 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 311 CTTATGGTTTGAAATTCAGGAAAGGAAGAGATGGTGGCACTTACATTGATGCTATCTTGC 370
Query 485 CAGGTGGATCAGCTGACAAAACC-GGAAAGTTCACTGTTGGCGATAGAGTTATTGCCACA 543
| ||||||||||||||||||||| ||||| ||||| || || || || ||||||||||||
Sbjct 371 CCGGTGGATCAGCTGACAAAACCGGGAAA-TTCACCGTCGGTGACAGGGTTATTGCCACA 429
Query 544 AGTGCAGTATTTGGAACAGAGATTTGGCCTGCAGCTGAGTACGGTAGGACAATGTACACA 603
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 430 AGTGCAGTGTTTGGGACAGAGATTTGGCCTGCAGCTGAATACGGTAGGACAATGTACACA 489
Query 604 ATTCGTCAGAGAATTGGTCCCTTGCTTATGCAAATGGAGAAGAGAAATGGTAAGGCTGAA 663
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 ATCCGTCAGAGAATTGGTCCCTTGCTTATGCAAATGGAGAAGAGAAATGGTAAGGCTGAA 549
Query 664 GATACTGGTGAGTTAACAGAGAAGGAGATCATAAGAGCTGAGAGAAATGCCGGATACATT 723
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 550 GATACTGGTGAGTTAACAGAGAAGGAGATAATAAGAGCTGAGAGGAACGCCGGATACATT 609
Query 724 AGCAGTAGATTGAGAGAGATTCAGATGCAAAACTATTTGAAGAAGAAAGAACAGAAAGCT 783
|||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 610 AGCAGTAGATTGAGGGAAATTCAGATGCAAAACTATTTGAGGAAGAAAGAACAGAAAGCT 669
Query 784 CAACGGGAGAAGGATCTTCGTGAAGGGCTGCAATTTTCCAAGAATGGTAAGTATGAGGAA 843
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 670 CAACGGGAGAAAGATCTTCGTGAAGGGCTGCAGTTTTCCAAGAATGGTAAATATGAGGAA 729
Query 844 GCATTGGAGAGGTTTGAGTCGGTGTTAGGTTCTAAACCAACACCAGAAGAAGCATCAGTT 903
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 730 GCATTGGAGAGATTTGAGTCTGTGTTAGGTTCTAAACCAACACCAGAAGAAGCATCAGTT 789
Query 904 GCAAGTTACAATGTTGCTTGTTGCTACTCAAAGCTTAATCAGGTTCAAGCTGGTCTCTCG 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GCAAGTTACAATGTTGCTTGTTGCTACTCAAAGCTTAATCAGGTTCAAGCTGGTCTCTCG 849
Query 964 GCTCTGGAAGAAGCATTGAAGTCAGGATATGAAGATTTTAAGAGAATCAGAAGTGATCCA 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 850 GCTCTGGAAGAAGCATTGAAGTCAGGATATGAAGATTTTAAGAGAATCAGAACAGATCCA 909
Query 1024 GATCTGGAAACTCTCAGGAAGTCGAAGGATTTCGATCCACTTCTGAAGCAATTCGACGAA 1083
|| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 910 GACCTGGAAAATCTTAGGAAGTCGAAGGATTTCGATCCACTCCTGAAGCAATTCGACGAA 969
Query 1084 TCTTTCATCAATGAGAGTGCCATTAACGCCATCAAATCCTTGTTTGGCTTTAACAAGAAA 1143
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 970 TCTTTCATCAACGAGAGTGCCATTAACGCCATCAAGTCCTTGTTTGGCTTTAACAAGAAA 1029
Query 1144 TAGTTCACCTAAAGTTTGTGTCTTTTGATGTGATCTGTTCATAGCTTCTCTTCTCTT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TAGTTCACCTAAAGTTTGTGTCTTTTGATGTGATCTGTTCATAGCTTCTCTTCTCTT 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5