BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55530.1 Length=1650 Score E Sequences producing significant alignments: (Bits) Value Ahg337633 jgi|Araly1|337633|fgenesh1_pg.C_scaffold_1004198 1520 0.0 Ahg495725 jgi|Araly1|495725|fgenesh2_kg.8__1541__AT5G56340.1 111 1e-23 Ahg359584 jgi|Araly1|359584|fgenesh1_pg.C_scaffold_419000001 111 1e-23 > Ahg337633 jgi|Araly1|337633|fgenesh1_pg.C_scaffold_1004198 Length=1041 Score = 1520 bits (823), Expect = 0.0 Identities = 985/1060 (93%), Gaps = 23/1060 (2%) Strand=Plus/Plus Query 305 ATGGAAGAAGCAGTTGTAACGAGGTATTGGTGTCATATGTGTTCTCAAACTGTGAATCCA 364 |||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| ||||| Sbjct 1 ATGGAAGAAGCAATTGCAACGAGGTATTGGTGTCACATGTGCTCTCAAACTGTGGATCCA 60 Query 365 GTCATGGAAGCTGAGATCAAATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATGGAA 424 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 61 GTCATGGAAGCTGAGATCAAATGCCCCTTTTGTCAAAGTGGGTTTGTTGAAGAGATGG-A 119 Query 425 GATGACGACGATCATGATTCTTCTGATCCGGCTGATGTTAGAGCAAACAACTCTCTTTGG 484 | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 120 -A-GACGACGATCATGATTCTTCTGATCCGGCTGATGTTAGAGCTAACAACTCTCTTTGG 177 Query 485 GCGCCTATCTTGATGGAACTTATGAATGATCCTGTGCGTCGTAGGAGAAACCAGAGTGTT 544 || |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 178 GCTCCTATCTTGATGGAACTTATGACTGATCCTGTGCGCCGTAGGAGAAACCAGAGTGTT 237 Query 545 GAGTCTGTTGAAGATAATCAAAACGAGGTACAGACCGAGAACAATG--AA-GACGATGGA 601 |||||||||||||||||||||||||||| ||||||||||| |||| || ||| || | Sbjct 238 GAGTCTGTTGAAGATAATCAAAACGAGGCACAGACCGAGAGTAATGAAAACAACGGTGAA 297 Query 602 GAAAATGATTTGGATTGGCAGCTTCAAGAGATTCTCAGGAGAAGGAGAAGACATTCCGCT 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 298 GAAAATGATTTGGATTGGCAGCTTCAAGAGATTCTCAGGAGAAGGAGAAGACATTCTGCT 357 Query 662 GCTGTTTTGCAGTTGCTTCAGGGGATACGAGCAGGGTTGTCTGTAGAATCTGAGAGTACT 721 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 358 GCTGTTTTGCAATTGCTTCAGGGGATACGAGCTGGCTTGTCTGTAGAATCTGAGAGTACT 417 Query 722 GGTAATGGAGGTAATAATCCGGGACGGGTGATCTTGATCAATACCTCCAATCAGACTATC 781 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GGTAATGGAGATAATAATCCGGGACGGGTGATCTTGATCAATACCTCCAATCAGACTATC 477 Query 782 ACGGTTCAAAACTCTGCTGATATGGATTCTGTACCTGCTGGTTCTTTAGGTGACTATTTC 841 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 ACGGTTCAAAGCTCTGCTGATATGGATTCTGTACCTGCTGGTTCTTTAGGTGACTATTTC 537 Query 842 ATTGGTCCTGGATTTGAAATGTTGCTTCAACGTCTAGCTGAGAATGATCCCAACAGATAT 901 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 538 ATTGGGCCTGGATTTGAAATGTTGCTTCAGCGTCTAGCTGAGAATGATCCCAACAGATAT 597 Query 902 GGAACACCTCCTGCTAAAAAAGAAGCTGTCGAGGCTTTGGCTACTGTGAAAATCGAAGAG 961 || |||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||| Sbjct 598 GGGACACCTCCAGCTAAAAAAGAAGCTGTTGAGGCTTTGGGTACTGTGAAAATTGAAGAG 657 Query 962 ACTCTGCAATGTTCGGTTTGTTTAGATGATTTTGAGATTGGAACTGAGGCAAAGCTGATG 1021 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 658 ACTCTGCAGTGTTCGGTTTGCTTAGATGATTTTGAGATTGGAACTGAGGCAAAGCGGATG 717 Query 1022 CCCTGT-ACGCACAAGTTTCATAGTGACTGCTTGTTACCATGGCTTGAGCTTCACAGTTC 1080 |||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 718 CCCTGTGA-GCACAAGTTTCATGGTGACTGCCTGTTACCATGGCTTGAGCTTCACAGTTC 776 Query 1081 ATGCCCGGTTTGCAGATATCAGTTACCTGCAGATGAAGCCAAGACTGATTCAGTAACAAC 1140 |||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 777 ATGCCCTGTTTGCAGATATCAGTTACCTGCAGATGAACCCAAGACTGACTCAGTAACAAC 836 Query 1141 AACGAGCGATAACAATGGAAGCAGTAGTGCTTCTGCTACAACCAGCCATGGAGCTGAGAA 1200 ||| || |||||||||||| ||||| ||||| ||||||||| |||||||||||||||||| Sbjct 837 AACAAGTGATAACAATGGAGGCAGTGGTGCTCCTGCTACAAGCAGCCATGGAGCTGAGAA 896 Query 1201 CAGCGATGGAAACCGGCGCCaagaagaagaagaagaagaagaagaggaggaggaggagga 1260 |||| | || | | | | ||| || ||||||||||| | ||||| | ||||||||| Sbjct 897 CAGC-A-GG---C-G-C-C-AAG--GA-GAAGAAGAAGA-G--GAGGACGCGGAGGAGGA 941 Query 1261 gaacgagaaCAATGACGGAAGCGGATTCTCGATCCCGTGGCCGTTTAGCACCTTGTTCTC 1320 ||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||| | Sbjct 942 GAACGAGGACAATGATGGAAGCGGATTCTCGATCCCATGGCCGTTTAGCACTTTGTTCAC 1001 Query 1321 CTCGTCGCAAGATAGCAATGCACCAACGGATTCTAGTTAA 1360 |||||| ||||||||||||||||||||||||||||||||| Sbjct 1002 CTCGTCCCAAGATAGCAATGCACCAACGGATTCTAGTTAA 1041 > Ahg495725 jgi|Araly1|495725|fgenesh2_kg.8__1541__AT5G56340.1 Length=1571 Score = 111 bits (60), Expect = 1e-23 Identities = 85/97 (88%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 326 AGGTATTGGTGTCATATGTGTTCTCAAACT-GTGAATCCAGTCATGGAAGCTGAGATCAA 384 |||||||||||||| |||||||| |||| | ||||||||| | |||||| |||||||||| Sbjct 246 AGGTATTGGTGTCACATGTGTTCACAAA-TGGTGAATCCAATAATGGAATCTGAGATCAA 304 Query 385 ATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATG 421 |||||||||||||||||| || || | ||||||||| Sbjct 305 ATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATG 341 > Ahg359584 jgi|Araly1|359584|fgenesh1_pg.C_scaffold_419000001 Length=649 Score = 111 bits (60), Expect = 1e-23 Identities = 85/97 (88%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 326 AGGTATTGGTGTCATATGTGTTCTCAAACT-GTGAATCCAGTCATGGAAGCTGAGATCAA 384 |||||||||||||| |||||||| |||| | ||||||||| | |||||| |||||||||| Sbjct 10 AGGTATTGGTGTCACATGTGTTCACAAA-TGGTGAATCCAATAATGGAATCTGAGATCAA 68 Query 385 ATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATG 421 |||||||||||||||||| || || | ||||||||| Sbjct 69 ATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATG 105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61858557880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5