BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55590.1 Length=2095 Score E Sequences producing significant alignments: (Bits) Value Ahg474620 jgi|Araly1|474620|fgenesh2_kg.1__4574__AT1G55590.1 3110 0.0 > Ahg474620 jgi|Araly1|474620|fgenesh2_kg.1__4574__AT1G55590.1 Length=1995 Score = 3110 bits (1684), Expect = 0.0 Identities = 1846/1924 (96%), Gaps = 12/1924 (1%) Strand=Plus/Plus Query 114 TCATGGAGGAAGTGACGAGATCTGTGTTAGCAGAAGAAATACTGAAGCGTTTAGATCTGG 173 ||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||| Sbjct 79 TCATGGAGGAAGTGACGAGATCTGTGTTAGCGGAGGAGATACTAAAGCGTTTAGATCTGG 138 Query 174 AGAATCTCTGTTCCGTCGCATGCGTTTCCACCACTCTCCGCTCCGCCGTTGTTTCCGGCG 233 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 139 AGAATCTCTGTTCCGTCGCCTGCGTTTCCACCACTCTCCGCTCCGCCGTTGTCTCCGGCG 198 Query 234 TTCTTCCTTCTCTTACCTCCCTCGATCTCTCTGTTTTCTCTCCGGACGATGAAACTCTGA 293 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 199 TTCTACCTTCTCTTACCTCTCTCGATCTCTCTGTTTTCTCTCCGGACGATGAAACTCTGA 258 Query 294 ATCACGTGCTGCGTGGTTGTATCGGACTCAGCAGCTTAACTCTGAATTGTCTCCGCCTTA 353 |||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 259 ATCACGTGTTGCGTGGTTGTATCGGACTTAGTAGCTTAACTCTGAATTGTCTCCGCCTTA 318 Query 354 ACGCTGCTTCTGTGCGTGGA-GTTCTCGGGCCACATCTCCGAGAACTTCACTTGCTCAGG 412 ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct 319 ACGCTGCTTCTGTGCGT-GAGGTTCTCGGGCCACATCTCCGAGAGCTTCACTTGCTCAGG 377 Query 413 TGTTCACTTTTATCCTCCACCGTCCTCACTTACATTGGCACCCTCTGCCCAAATCTCCGG 472 ||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 378 TGTTCGCTTTTATCCTCCACCGTCCTCACTTCCATCGGCATCCTCTGCCCAAATCTCCGG 437 Query 473 GTTCTTACTCTGGAAATGGCAGACCTGGATTCTCCCGATGTTTTTCAGTCTAACTTGACG 532 |||||| | |||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 438 GTTCTTTCCCTGGAAATGGCAGACCTGGATTCTCCTGCTGTTTTTCAGTCTAACTTGACG 497 Query 533 CAGATGCTTAACGGGTGTCCTTATCTGGAGTCTCTGCAACTTAATATCCGAGGTATCCTA 592 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 498 CAGATGCTTAACGGGTGTCCGTATCTGGAGTCTCTGCAACTTAATATCCGAGGTATCCTA 557 Query 593 GTAGATGCCACCGCTTTCCAGTCTGTTAGATTCTCCTTGCCAGAAACTCTCAAAGCTCTA 652 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 558 GTAGATGCCACCGCTTTCCAGTCTGTTAGATTCTCCTTGCCAGAAACTCTCAAAGTTCTA 617 Query 653 AGGTTACAGCCACTTCTTGAGTCTGAGGCAATTCTTCTCATGAACAGATTCAAAGTGACT 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 618 AGGTTACAGCCACTTCTTGAGTCTGAGGCAATTCTTCTCATGAACAGATTCAAAGTCACT 677 Query 713 GGAACTTATTTATCTCAGCCTGATTATAATAGTGCCTTGCTATCTCCTTCACCTTCTTTT 772 ||||||||||| ||||||||||| | | ||||||||||||| |||||||||||||||||| Sbjct 678 GGAACTTATTTGTCTCAGCCTGA-T-T-ATAGTGCCTTGCTTTCTCCTTCACCTTCTTTT 734 Query 773 ACTTTGCAAAGCCTGTCTCTTGTCCTGGACTTGATATCTGACAGGCTTATCATAGCTATC 832 |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 735 ACTTTGCAAACCCTGTCTCTTGTCCTGGACTTGATATCTGACAGGCTAATCATAGCTATC 794 Query 833 ACAGGTTCTCTTCCTCAACTTGTCAAACTGGACCTTGAAGATCGTCCTGAAAAAGAGCCA 892 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 795 ACAGGTTCTCTTCCTCAGCTTGTCAAACTGGACCTTGAAGACCGTCCTGAAAAAGAGCCA 854 Query 893 TTTCCCGACAATGACTTGACTTACACTGGGCTTCAGGCTCTCGGTTTTTGTCAGCAACTC 952 ||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 855 TTTCCTGACAGTGACTTGACTTACACTGGGCTTCAGGCTCTGGGTTATTGTCAGCAACTC 914 Query 953 ACAAGCCTCTCTCTGGTTCGAACTTGTTACAACCGCAAGATATCATTCAAGAGAATAAAC 1012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 ACAAGCCTCTCTCTGGTTCGAACTTGTTACAACCGCAAGATATCATTCAAGAGAATAAAC 974 Query 1013 GATATGGGTATATTTCTTCTCTCCGAGGCTTGCAAGGGTTTAGAGTCTGTGAGACTCGGT 1072 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 975 GATATGGGTATATTTCTTCTTTCCGAGGCTTGCAAGGGTTTAGAGTCAGTGAGACTCGGT 1034 Query 1073 GGGTTCCCAAAAGTCAGCGACGCTGGTTTTGCGTCGCTCCTTCACTCATGTCGGAACTTG 1132 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1035 GGGTTCCCAAAAGTCAGCGACGCTGGTTTTGCATCGCTCCTTCACTCATGTCGGAACTTG 1094 Query 1133 AAAAAGTTTGAAGTTCGAGGTGCCTTCCTGTTGTCTGATTTGGCATTTCATGATGTCACA 1192 |||||||||||| | ||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 1095 AAAAAGTTTGAAATACGAGGTGCCTTCCTGTTATCTGATTTGGCATTCCATGACGTCACA 1154 Query 1193 GGGTCTTCCTGTTCTCTTCAAGAGGTCAGACTCTCGACGTGCCCTCTCATAACAAGTGAA 1252 |||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| Sbjct 1155 GGGTCTTCCTGTTCTCTTCAAGAGGTCAGACTCTTGACGTGCCCTCTCATAACCAGCGAA 1214 Query 1253 GCTGTGAAGAAACTGGGGTTGTGTGGCAATCTTGAGGTGCTCGACTTGGGCAGCTGCAAA 1312 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1215 GCCGTGAAGAAACTGGGGTTGTGTGGCAATCTTGAGGTGCTCGACTTGGGCAGCTGCAAA 1274 Query 1313 AGTATATCAGATTCTTGCCTCAACTCTGTTTCAGCCCTCAGAAAGTTAACTTCTCTGAAT 1372 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1275 AGTATATCAGATTCTTGCCTCAACTCTGTTTCAGCCCTCAGAAAGTTAACGTCTCTGAAT 1334 Query 1373 CTCGCTGGAGCTGATGTAACCGATAGTGGCATGCTTGCACTTGGTAAGTCAGATGTTCCC 1432 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1335 CTCGCAGGAGCTGATGTAACCGATAGTGGCATGCTTGCACTTGGTAAATCAGATGTTCCC 1394 Query 1433 ATCACGCAACTGTCTCTCCGCGGCTGTAGGAGAGTCAGTGACAGAGGAATATCCT-ATCT 1491 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1395 ATCACGCAACTGTCTCTCCGCGGCTGTAGGAGAGTCAGTGACAGAGGAATAT-CTCATCT 1453 Query 1492 GTTGAACAATGAAGGAACAATCAGCAAAACATTGTCAACACTTGATCTCGGTCATATGCC 1551 || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1454 ATTAAACAATGAAGGAACAATCAGCAAAACATTATCAACACTTGATCTCGGTCACATGCC 1513 Query 1552 AGGAATCTCAGACAGAGCCATCCACACAATCACACACTGTTGCAAGGCTTTAACAGAGCT 1611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1514 AGGAATCTCAGACAGAGCCATCCACACAATCACACACTGTTGCAAGGCTTTAACAGAGCT 1573 Query 1612 GAGTATCAGGAGTTGCTTTCACGTAACAGATTCTTCGATAGAGTCCCTGGCTACATGGGA 1671 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1574 GAGTATCAGGAGTTGCTTTCACGTAACAGATTCTTCGATAGAGTCGCTGGCTACAAGGGA 1633 Query 1672 AAGACAAGCAGAGGGAGGAAGCAAACAATTGAGGAAGCTCAATGTCCATAACTGTGTGAG 1731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1634 AAGACAAGCAGAGGGAGGAAGCAAACAATTGAGGAAGCTCAATGTCCATAACTGTGTGAG 1693 Query 1732 CTTAACTACTGGAGCACTGAGATGGTTAAGCAAGCCGTCTTTTGCGGGTCTGCATTGGCT 1791 |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1694 CTTAACGACTGGAGCTCTGAGATGGTTAAGCAAGCCGTCTTTCGCGGGTCTGCATTGGCT 1753 Query 1792 CGGAATGGGACAAACACGATTCGCGGGTCGAAAAGAGACGGTTACAGCTATGATTTGTGG 1851 |||| | ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| Sbjct 1754 CGGATTAGGACAAACACGATTCGCTGGTCGCAAAGAGACGGTTACAGCTACGATTTGTGG 1813 Query 1852 ACAGAGGCCGTGGCTCACGTTGTGCTTCGATGGATGTGAGCTTGGATGCTCTGATGGTTG 1911 ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 1814 ACAGAGGCCATGGCTCACGTTGTGCTTTGATGGATGTGAGCTTGGATGCTATGATGGTTG 1873 Query 1912 GGAATTCCACACGCCACAACGCCACTGAAGAACTCA-TTGTCTCACTAGTTCATGTATTG 1970 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1874 GGAATTCCACACGCCACAACGCCACTGAAGAACTCAATTGTCTCACTAGTTCATGTATTG 1933 Query 1971 TATAAAATCGTTCAGAAACATGATTCAGTAGGATGTGT-AATTTTATTTAAACCTT-TTA 2028 |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||| Sbjct 1934 TATAAAATCGTTCAGAAACATGATTCAGTAGGCTGTGTTAATTT-ATTTAAAC-TTCTTA 1991 Query 2029 AAAA 2032 |||| Sbjct 1992 AAAA 1995 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78808716905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5