BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55670.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474626 jgi|Araly1|474626|fgenesh2_kg.1__4580__AT1G55670.1 1112 0.0
> Ahg474626 jgi|Araly1|474626|fgenesh2_kg.1__4580__AT1G55670.1
Length=753
Score = 1112 bits (602), Expect = 0.0
Identities = 715/766 (93%), Gaps = 22/766 (3%)
Strand=Plus/Plus
Query 22 AGATCATAAATCCAAAACCACTCATTTTTCTATT-ACTGAAATTTTTCTTagagaagaag 80
||||||||||||||||||||||||||| ||| || ||||||| ||||||| || |||||
Sbjct 1 AGATCATAAATCCAAAACCACTCATTTCTCT-TTCACTGAAAATTTTCTT--AG-AGAAG 56
Query 81 aagaagaagCAAAATGGCCACAAGCGCATCAGCTTTGCTCTCACCAACCACATTCTCCAC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 AAGAAGAAGCAAAATGGCCACAAGCGCATCAGCTTTGCTCTCACCAACCACATTCTCCAC 116
Query 141 TGCAATCTCCCACAAAAACCCTAACTCCATCTCATTCCATGGCCTTCGTCCCCTCCGTCT 200
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 117 TGCAATCTCCCACAAAAACCCTAACTCCATCTCATTCCATGGTCTCCGTCCCCTCCGTCT 176
Query 201 AGGTGGCTCCTCCTCCGCCCTACCCAAACTATCAACCACCG--GGA-GAAAATCCTCCTC 257
|||||||||||||||||| |||||||||| ||||||||| ||| ||||||| |||||
Sbjct 177 CGGTGGCTCCTCCTCCGCCTTACCCAAACTCTCAACCACCTCCGGAAGAAAATCATCCTC 236
Query 258 CGCTGTCGTGAGAGCTGAGCTAAGCCCTTCCATCGTCATAAGTCTCAGCACAGGTCTCTC 317
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGCCGTCGTGAGAGCTGAGCTAAGCCCTTCCATCGTCATAAGTCTCAGCACAGGTCTCTC 296
Query 318 CCTCTTCCTCGGCCGTTTCGTCTTCTTCAACTTCCAGAGAGAGAACGTAGCAAAACAGGG 377
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 297 CCTCTTCCTTGGCCGTTTCGTCTTCTTCAACTTCCAGAGAGAGAACGTCGCGAAACAAGG 356
Query 378 CTTACCGGAGCAGAACGGAAAAACCCATTTCGAAGCTGGAGATGATCGTGCTAAGGAGTA 437
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 357 CTTACCGGAGCAAAACGGAAAAACCCATTTCGAAGCTGGAGATGATCGTGCTAAGGAATA 416
Query 438 CGTCAGTCTCTTGAAATCGAACGATCCAATTGGATTCAACATTGTTGATGTTCTTGCTTG 497
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 417 CGTCAGCCTCTTGAAATCGAACGATCCAATTGGATTCAACATCGTTGATGTTCTTGCTTG 476
Query 498 GGGTTCTATTGGACACATCGTTGCTTACTACATCTTGGCTACTTCCAGCAATGGATACGA 557
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 477 GGGTTCTATTGGACACATCGTTGCTTACTACATCTTGGCAACTTCCAGCAATGGATACGA 536
Query 558 CCCAAGCTTCTTTGGATGATTCGTTTCAATGTCAATCTCTCGTATATGTATATGTATATG 617
|||||||||||||||||||||| ||||||| || | |||| | |||||||||||||
Sbjct 537 CCCAAGCTTCTTTGGATGATTCATTTCAATCTCTTT-TCTC-TC---GTATATGTATATG 591
Query 618 TTTGACttgtgttgcaagctatctaatctgttctctatctctgtttcttc-t-t-c-tgt 673
|||||||||||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 592 TTTGACTTGTGTTGCAAGCTATCTAATCTGTTCTCTATCTCTGTTTCTTCATATTCCTCT 651
Query 674 tgttgttgttgttgtctAAGACTTGTCCCTCTTTTTGCAAATGTT-TTATTTCTCCATTT 732
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 652 -GTTGTCGTTGTTGTCTAAGACTTGTCCCTCTTTTTGCAAAT-TTCTTATTTCTCCATTT 709
Query 733 ACAAAGATTGGTTTGCAGAGTTTTATAAGAAGAACATAATAGTATA 778
| ||||||||||||||||||||| | | ||||||||||| ||||||
Sbjct 710 AAAAAGATTGGTTTGCAGAGTTTCA-A-GAAGAACATAAAAGTATA 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5