BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55760.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924095 jgi|Araly1|924095|scaffold_105376.1 1644 0.0
> Ahg924095 jgi|Araly1|924095|scaffold_105376.1
Length=1031
Score = 1644 bits (890), Expect = 0.0
Identities = 986/1033 (95%), Gaps = 4/1033 (0%)
Strand=Plus/Plus
Query 528 CGGCTTTGGCTTTTGCTAGGATGACTGATTCTGCTTACAGAGTAGACACCATTTCTAGAC 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CGGCTTTGGCTTTTGCTAGGATGACTGATTCTGCTTACAGAGTAGACACCATTTCCAGAC 60
Query 588 TCGCCCAATGGCGAATCCACAATCTTTCTTCCTCCACTTACCGCAAGTCCGATCCTTTCA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGCCCAATGGCGAATCCACAATCTTTCTTCCTCCACTTACCGCAAGTCCGATCCTTTCA 120
Query 648 AGATGGGTCTTTGGAATTGGCACTTGTCTGTGGAGAAAAGCAAGATGCTATTAAATGTTA 707
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 AGATGGGTCTTTGGAATTGGCACTTGTCTGTAGAGAAAAGCAAGATGCTATTAAATGTTA 180
Query 708 AGTTGTATCCAGAGGTATCAAACCTTACCAGAGAAAATCCACCGGTTGCTTCCTTTGCTC 767
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 181 AGTTGTATCCAGAGGTATCCAACCTTACCAGAGAAAATCCACCAGTTGCTTCCTTTGTTC 240
Query 768 TTCGTGTTGTCTCTTCTACTGGTGAGAG-AAAGGCTCTATCTCATCCAGAAGTAATAGAT 826
||||||||||||||||| ||||||| || |||| || |||||||||||||||||||||||
Sbjct 241 TTCGTGTTGTCTCTTCTGCTGGTGATAGGAAAG-CTTTATCTCATCCAGAAGTAATAGAT 299
Query 827 AAGCGGATTAAGACAAACGAAGATTTTATTTGGACTATTGAAGTTCCCTTAACTGGGAAA 886
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGCGAATTAAGACAAACGAAGATTTTATTTGGACTATTGAAGTTCCCTTAACTGGGAAA 359
Query 887 ATCATCATCGACGTCGAGTTTCTTGACTTGAAGGTTTTGTCTCAAGATAGTGGAGAACTT 946
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 360 ATCATCATCGACGTCGAGTTTCTTGACTTGAAGGTTCTGTCTCAAGATAGTGGAGAAATT 419
Query 947 TACTCTATCTGGGCCA-ACGGTTCAACTGAGAATCAATCGCAAGTAACTGCGGTAACATC 1005
|||||||||||||| | |||||||||| |||||||||||| ||| || |||||||||||
Sbjct 420 TACTCTATCTGGGC-AGACGGTTCAACCGAGAATCAATCGAAAGGGACAGCGGTAACATC 478
Query 1006 CCTTGGACGTATGTTGACAGAAAGCATTTACACCGACATAACGATCAATGCCTCTGATGG 1065
||||||||||||||||||||||||||||||||| ||||||| ||||||||| || | |||
Sbjct 479 CCTTGGACGTATGTTGACAGAAAGCATTTACACTGACATAATGATCAATGCTTCGGGTGG 538
Query 1066 AAGCATTGGAGCTCACCGAGCAGTTCTCGCTGCCCGTTCACCTGTTTTCCGCAGCATGTT 1125
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 539 AAGCATTGGAGCTCACCGAGCTGTTCTTGCTGCCCGTTCACCTGTTTTCCGCAGCATGTT 598
Query 1126 TTTACACGACCTGAAAGAGAAAGAACTATCAGAAATAAACGTACTCGACATGCCACTTGA 1185
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 TTTACACGACCTGAAAGAGAAAGAACTATCAGAAATAAACATACTCGACATGCCACTTGA 658
Query 1186 TGCTTGCCAAGCTTTTCTCAGTTATATCTACGGCAATATCCAAAACGAAGACTTTCTTAT 1245
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 TGCTTGCCAAGCTTTTCTGAGTTATATCTACGGCAATATCCAGAACGAAGACTTTCTTAT 718
Query 1246 ACACAGATTGGCACTCCTCCAAGCAGCTGAGAAATATGATATTGCTGATTTAAAAGAGGC 1305
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 719 ACACAGATTGGCACTCCTCCAAGCAGCTGAAAAATATGATATTGCTGATTTAAAAGACGC 778
Query 1306 GTGCCACTTGAGTCTTCTAGACGATATCGACACAAAGAATGTGCTTGAGAGGCTACAGAA 1365
||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 779 ATGCCACTTGAGCCTTCTAGACGACATCGACACGAAGAATGTGCTTGAGAGGCTACAAAA 838
Query 1366 TGCTTATCTCTATCAATTACCTGAACTGAAGGCTAGCTGCATGAGATATCTTGTGAAGTT 1425
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TGCTTATCTCTATCAATTACCTGAACTGAAGGCTAGCTGCATGAGGTATCTTGTGAAGTT 898
Query 1426 TGGCAAAATATTTGAGATCCGAGACGAGTTCAACATATTCATGCAATGCGCAGACAGAGA 1485
||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 899 TGGTAAGATATTTGAAATCCGCGATGAGTTCAACATATTCATGCAATGCGCAGACAGAGA 958
Query 1486 TTTGATTTCTGAAATCTTCCACGAAGTCCTCAGTACCTGGAAAGGATTTTAGGGGAAATC 1545
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 959 TTTGATTTCTGAAGTCTTCCACGAAGTCCTCGGTACCTGGAAAGGATTTTAGAGGAAATC 1018
Query 1546 AGAAAGGGTATGT 1558
|||| ||||||||
Sbjct 1019 AGAATGGGTATGT 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5