BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55910.1 Length=1196 Score E Sequences producing significant alignments: (Bits) Value Ahg914721 jgi|Araly1|914721|Al_scaffold_0001_4975 1548 0.0 > Ahg914721 jgi|Araly1|914721|Al_scaffold_0001_4975 Length=984 Score = 1548 bits (838), Expect = 0.0 Identities = 936/984 (95%), Gaps = 3/984 (0%) Strand=Plus/Plus Query 28 Atgtctcgttctcttg---tcttcttcttcctctttcttgtcttggtcgtcccttgtctc 84 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTCGTCCTCTTGTCTTCTTCTTCTTCCTCTTTCTTGTCTTGGTCGTCCCTTGTCTC 60 Query 85 tcCCATGGAACCGGAGGAGACCACGACGACGATGAGGCTTCGCACGTTAAGAGTTCCGAT 144 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 TCCCATGGAACCGGAGGAGACCACGACGACGATGAGGCTCCGCACGTTAAGAGTTCCGAT 120 Query 145 CTCAAATCCAAATCCTTAATCTCCGTCAAGATCGCATGTCTTGTCATCATCTTTGTCCTC 204 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 CTCAAATCTAAATCCTTAATCTCTGTCAAGATCGCATGTCTTGTCATCATCTTTGTCCTC 180 Query 205 ACGTTCATAAGCGGTGTATCTCCTTATTTCTTGAAATGGAGCCAAGGGTTTTTGGTTCTT 264 ||||| || ||||| || ||||||||||||||||||||||| |||||||| ||||||||| Sbjct 181 ACGTTTATCAGCGGCGTCTCTCCTTATTTCTTGAAATGGAGTCAAGGGTTGTTGGTTCTT 240 Query 265 GGTACACAATTCGCCGGAGGCGTGTTTCTTGCAACCGCCTTGATGCATTTCTTGTCGGAC 324 || |||||||||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct 241 GGAACACAATTCGCCGGTGGAGTGTTTCTTGCAACCGCCTTGATGCATTTCTTGTCTGAT 300 Query 325 GCTGATGAGACGTTTCGTGGTTTGTTGACGGCGGAAGGAGAGTCGGAGCCATCTCCGGCT 384 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 301 GCTGATGAGACGTTTCGTGATTTGTTGACGGCGGAAGGAGAGTCAGAGCCATCTCCGGCT 360 Query 385 TACCCATTTGCTTATATGTTGGCTTGTGCTGGTTTTATGTTGACCATGCTTGCTGATTCT 444 |||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| Sbjct 361 TACCCATTTGCTTACATGTTGGCTTGTGCTGGTTTTATGATAACCATGCTTGCTGATTCT 420 Query 445 GTCATCGCTCATATCTACTCAAAGACCCAAAACGATTTGGAGCTTCAAGGAGAAGACAAA 504 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTCATCACTCATATCTACTCAAAGACCCAAAACGATTTGGAGCTTCAAGGAGAAGACAAA 480 Query 505 TCGAATCAGAGGTCAGCAACAACTGAAACTTCGATTGGAGATAGCATTCTATTGATCGTA 564 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 481 TCGAATCAGACGTCAGCAACAACTGAAACATCGATTGGAGATAGCATTCTATTGATCGTA 540 Query 565 GCTCTCTGTTTTCACTCTGTCTTCGAAGGCATAGCTATTGGTATTTCAGAGACTAAATCA 624 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 541 GCTCTCTGTTTTCACTCTGTCTTCGAAGGCATAGCTATTGGTATCTCAGAGACTAAATCA 600 Query 625 GATGCTTGGAGAGCTCTCTGGACAATAACACTCCATAAGATATTTGCAGCGATTGCAATG 684 |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 601 GATGCTTGGAGAACTCTATGGACAATAACACTCCACAAGATATTTGCAGCGATTGCAATG 660 Query 685 GGGATAGCTCTTCTCCGTATGATCCCTGACCGTCCTTTATTCTCCTCAATCACTTATTCT 744 || || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 661 GGAATTGCTCTTCTCCGTATGATCCCTGACCGTCCTTTGTTCTCATCAATCACTTATTCT 720 Query 745 TTCGCATTCGCCATCTCGAGCCCAATTGGTGTTGCCATCGGGATAGTCATCGATGCAACG 804 |||||||||||||||||||||||||| |||||||| || || ||||| |||||||||||| Sbjct 721 TTCGCATTCGCCATCTCGAGCCCAATCGGTGTTGCTATTGGAATAGTAATCGATGCAACG 780 Query 805 ACTCAAGGGTCCATCGCGGATTGGATATTCGCATTGTCGATGAGCTTGGCGTGTGGGGTA 864 |||||||| || ||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 781 ACTCAAGGATCGGTCGCGGATTGGATTTTCGCAGTGTCGATGAGCTTGGCGTGTGGGGTA 840 Query 865 TTTGTGTATGTATCTGTGAACCATTTGTTGGCAAAAGGGTATCGACCAAACAAGAAAGTT 924 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 841 TTTGTGTATGTCTCGGTGAACCATTTGTTGGCAAAAGGGTATCGACCAAACAAGAAGGTT 900 Query 925 CATGTTGATGAGCCTCGTTATAAGTTTTTGGCTGTGTTGTTTGGAGTTGTTGTCATTGCC 984 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 CATGTGGATGAGCCTCGTTATAAGTTTTTGGCTGTGTTGTTTGGAGTTGTTGTCATTGCC 960 Query 985 ATTGTTATGATATGGGACACTTGA 1008 |||||||||||||||||||||||| Sbjct 961 ATTGTTATGATATGGGACACTTGA 984 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44641935807 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5