BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55960.1 Length=1723 Score E Sequences producing significant alignments: (Bits) Value Ahg314809 jgi|Araly1|314809|fgenesh1_pm.C_scaffold_1003589 1550 0.0 Ahg904201 jgi|Araly1|904201|Al_scaffold_0003_1329 593 1e-168 > Ahg314809 jgi|Araly1|314809|fgenesh1_pm.C_scaffold_1003589 Length=1158 Score = 1550 bits (839), Expect = 0.0 Identities = 1085/1196 (91%), Gaps = 47/1196 (4%) Strand=Plus/Plus Query 210 CTGGGCTTTGTCTTTCTTCTCCGACGAACTTTCTCGGCGAGCTGTTTCCGATTGTTATTT 269 |||||||||||||||||||||||| |||||||| ||||||||| |||| |||| |||||| Sbjct 9 CTGGGCTTTGTCTTTCTTCTCCGAAGAACTTTCCCGGCGAGCTCTTTCTGATTCTTATTT 68 Query 270 ATGGACCACCGCGATTTCGCTTCTCTTAAtccttctccttcatatcttcttttccactaa 329 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 69 ATGGGCCACCGCGATTTCGCTTCTCTTAATCCTTCTATTTCATATCTTCTTTTCCTCTAA 128 Query 330 atttcgcttcttcacttctgctccttcttcttcttcttcttcttcttcttcttcCTCTCC 389 ||||||||||||||||||| | |||||||||| || |||| | || | | || Sbjct 129 ATTTCGCTTCTTCACTTCT--T-CTTCTTCTTC-TC--CTTC-AC--CTAC--CGAATCA 177 Query 390 CTCTACAGAATCAGTTCCCGCGAACTCTCAATCAAGGATATCCAAACTAGTCTCTGATGA 449 | | | ||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 178 GT-TTC----TCA--TGCCATAAACTCTCAATCAAGGATATCCAAACTAGTCTCTGATGA 230 Query 450 AGATTTGAAATTTCTGATCGAGAATTTGGAGGAGGAAACAAATGATTCCACGGAGATATG 509 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 231 AGATTTGAAATTTCTGATCGAGAATTT---GGAGGAAACAAATGATTCTACGGAGATATG 287 Query 510 GGAACATGTTATTCACAAAAGCAACGATCGCATTTCATACTCTGCTAAACGCTGCAAACC 569 |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 288 GGAAAATGTTATTCACAAAAGCAACCATCGCATTTCATACACTGCTAAACGCTGCAAACC 347 Query 570 CAAAGATGGCGGTGGTCCTATGAAGTACCTAAGTGTCACGGTCTTCGAGGGTTTCTCTGC 629 ||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct 348 CAAAGATGGTGGTGGTCCTATGAAGTACCTAAGTGTTACGGTCTTCGAGGATTGCTCTGC 407 Query 630 AGAGATTGTGAGGGACTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGT 689 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 AGAGATTGTGAGGGATTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGT 467 Query 690 GGTTGAGCATGAGCAGTTGCAGGTTGATAGTAATACTGGAATTGAGATTGGTCGCACCAT 749 |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || Sbjct 468 TGTTGAGCATGAGCAGTTGCAGGTTGACAGTAGTACCGGAATTGAGATTGGTCGCACAAT 527 Query 750 TAAAAAGTTTCCCTTGTTGACATCGAGAGAGTACGTTCTAGCTTGGAGATTGTGGCAAGG 809 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 528 CAAAAAGTTTCCCTTGTTGACATCAAGAGAGTACGTACTAGCTTGGAGATTGTGGCAAGG 587 Query 810 AAAGGAGAAGAAGTTCTACTGTTTCACAAAGGAATGTGATCACAATATGGTACCACAACA 869 ||||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 588 AAAGG-G--CAAGTTTTACTGTTTCACAAAGGAATGTGATCACAATATGGTGCCGCAACA 644 Query 870 GAGGAAGTATGTACGTGTAAGTTACTTTAGATCTGGTTGGCGAATCAGGCAAGTTCCCGG 929 |||||| || ||||||||||| | | || | || | || | |||||||| Sbjct 645 GAGGAATTACGTACGTGTAAG---C--T--AT-T--TT--AG-AT----C-TGTTCCCGG 686 Query 930 TAGAAATGCGTGTGAGATCAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGAT 989 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 687 TCGAAATGCTTGTGAGATCAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGAT 746 Query 990 GGCCAAGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCT 1049 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 747 GGCGAAGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCT 806 Query 1050 TTGTAAATACATAGCAACCAGTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTT 1109 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 807 TTGTAAATACATAGCAACCAGTCATAGAACCCAAGGACCCATTTTATCTGCTGTCACCTT 866 Query 1110 AATGAAAGAGGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCA-TGG 1168 ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 867 AATGAAAAAGGTTCCATCAGAGTTAGAAACTCAGACAGATAATGTCACAGCCTCCATTGG 926 Query 1169 AAACAAGTAGTGGTGAAGGAGTGTTGAGTCATGTTGTAGCCGCCAAACAGAAGaaaaaaa 1228 ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| Sbjct 927 -AACAAGTAGTGGTGAAGGACTGTTAAGTCATGTTGTA---GCCAAACAGAAGAAAAAAT 982 Query 1229 TGAGAAAGCCATCAACGAAACTGATAGCAAAAGGTCTAGTACTTGTGGGCGGTGCGATCT 1288 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 983 TGAGAAAGCCATCAAAGAAACTGATAGCAAAAGGTCTAGTACTTGTGGGCGGTGCGATCT 1042 Query 1289 GCTTGTCCCGTGGTCCCTCAGCCTTAGGTGCTAAAGTCGCATTGGCTTACCTCTTGACGA 1348 | ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1043 GTTTGTCCCGTGGTCACTCCGCCTTAGGTGCTAAAGTCGCATTGGCTTACCTCTTGACGA 1102 Query 1349 AGCTGAACAAACGTGGAACTTCTCTGAATCAGACCACCCAGACCACCACCATTTAA 1404 |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 1103 AGCTGAACAAACGTGGAACTTCTCTGAATCAGACCATCCAGAACACCAGCATTTAA 1158 > Ahg904201 jgi|Araly1|904201|Al_scaffold_0003_1329 Length=3279 Score = 593 bits (321), Expect = 1e-168 Identities = 593/718 (83%), Gaps = 44/718 (6%) Strand=Plus/Plus Query 414 CTCTCAATCAAGGATATC--C-AAACTAGTCTCTGATGAAGATTTGAAA-TTTCTGATCG 469 ||| |||||||| ||||| | | ||| || |||||||||||| | ||| |||| | | Sbjct 228 CTCCCAATCAAGAATATCTACTACACTTGTTTCTGATGAAGATCT-AAAGGGTCTGTTTG 286 Query 470 AGAATTTGGAGGAGGAAACAAATGA--TTCCACGGAGATATGGGAACATGTTATTCACAA 527 | || || ||||||||||| ||| | | | ||||||||||| |||||||||| || Sbjct 287 AAAAATT---GGAGGAAACAAGTGAGGATGCTC--AGATATGGGAAAATGTTATTCAGAA 341 Query 528 AAGCAACGATCGCATTTCATACTCTGCTAAACGCTGCAAACCCAA-AGATGGCGGTGGTC 586 ||||||| |||| | |||||| |||||||| |||||||| |||| |||| ||||||| Sbjct 342 AAGCAACCCTCGCGTCTCATACACTGCTAAATGCTGCAAA-CCAACAGAT---GGTGGTC 397 Query 587 CTATGAAGTACCTAAGTGTC-ACGGTCTTCGAGGGTTTCTCTG-CAGAGATTGTGAGGGA 644 | |||||||| | ||| | || || || |||| || ||| | ||||| || ||||||| Sbjct 398 CCATGAAGTATTTGAGT-ACTACAGTGTTTGAGGATTGCTC-GCCAGAGGTTTTGAGGGA 455 Query 645 CTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGTGGTTGAGCATGAGCA 704 |||||||||||||||||| || ||||||| ||||||||| ||||| |||||||||||||| Sbjct 456 CTTTTACATGGACAATGAATACAGGAAACAATGGGATAAAACTGTCGTTGAGCATGAGCA 515 Query 705 GTTGCAGGTTGATAGTAATACTGGAATTGAGATTGGTCGCACCATTAAAAAGTTTCCCTT 764 |||||||||||| ||||||| |||||| |||||||||||||| || |||||||||||||| Sbjct 516 GTTGCAGGTTGACAGTAATAGTGGAATCGAGATTGGTCGCACTATAAAAAAGTTTCCCTT 575 Query 765 GTTGACATCGAGAGAGTACGT-TCTAGCTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGT 823 ||| ||| | || ||||| || | |||| |||| ||||||| | || ||||| ||| | Sbjct 576 GTTAACACCAAGGGAGTATGTAT-TAGCGTGGAAATTGTGGGAGGGGAAGGATAAGT--T 632 Query 824 TCTACTGTTTCA-CAAAGGAATGTGATCACAATATGGTACCACAACAGAGGAAGTATGTA 882 | |||||||||| ||| ||||||||||||||||||||| || |||||||||||||||||| Sbjct 633 T-TACTGTTTCATCAA-GGAATGTGATCACAATATGGTGCCGCAACAGAGGAAGTATGTA 690 Query 883 CGTGTAAGTTACTTT-AGATCTGGTTGGCGAATCAGGCAAGTTCCCGGTAGAAATGCGTG 941 ||||||||||| ||| ||||||||||||||||| ||| ||| | |||| || || Sbjct 691 CGTGTAAGTTA-TTTCAGATCTGGTTGGCGAATTAGGAAAGG-CA----AGAAC-GCTTG 743 Query 942 TGAGAT-CAAAATGTTTCACCAGGA-GAATGCTGGG-TTAAATGTTGAGATGGCCAAGCT 998 |||||| || | ||||||||||||| || ||| ||| ||||||||||||||||| ||||| Sbjct 744 TGAGATACACA-TGTTTCACCAGGAAGA-TGC-GGGATTAAATGTTGAGATGGCAAAGCT 800 Query 999 CGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCTTTGTAAATA 1058 || ||||| | ||||||||||||||||||||||||||||||||| || ||| |||| || Sbjct 801 TGCTTTCTCTAGAGGCATATGGAGTTACGTTTGTAAGATGGAAAATGCACTTCGTAAGTA 860 Query 1059 CATAGCAACCAGTCATAGAACCCAAGGACCCA-TTCTATCTGCTGTCACCTTAATGAA 1115 ||| ||||||||||||||| ||||||| |||| || |||||||||| | ||||||||| Sbjct 861 CATTGCAACCAGTCATAGACCCCAAGGGCCCACTT-TATCTGCTGTAAGCTTAATGAA 917 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64639145765 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5