BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56050.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474672 jgi|Araly1|474672|fgenesh2_kg.1__4626__AT1G56050.1 2211 0.0
> Ahg474672 jgi|Araly1|474672|fgenesh2_kg.1__4626__AT1G56050.1
Length=1367
Score = 2211 bits (1197), Expect = 0.0
Identities = 1313/1369 (96%), Gaps = 7/1369 (1%)
Strand=Plus/Plus
Query 43 TTTTGAGCTGAGAGGCTGAGAAAATTAGCACCATGGCGAGAGCAGCTTGTAGCAGTGTCG 102
||| ||||||||||| |||||||||||| || ||||||||||||||||||| ||||||||
Sbjct 1 TTTAGAGCTGAGAGGTTGAGAAAATTAGTACGATGGCGAGAGCAGCTTGTACCAGTGTCG 60
Query 103 TCACGGCTATGGCTTTGTTACCCTCTAAGTCTCTTC-TCTGTAGAAACCAGTTATTATTC 161
|||||||| ||||||||||||| || ||||||| || | |||||||||||||| ||||||
Sbjct 61 TCACGGCTTTGGCTTTGTTACCGTCAAAGTCTC-TCTTATGTAGAAACCAGTTGTTATTC 119
Query 162 TCCGGTAATTCCAAGTTCGTCGGAGTTTTGACTCTCCAGAAGCGATGCTTTTCCTCCAAA 221
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TCCGGTAATTCCAAGTTCGTAGGAGTTTTGACTCTCCAGAAGCGATGCTTTGCCTCCAAA 179
Query 222 GTAAGCATGAGTTTGAAAGCTGGTATCGTCGGTCTTCCTAACGTCGGAAAGTCTACTCTT 281
|| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 180 GTCAGCATGAGTTTGAAAGCTGGAATCGTCGGTCTTCCTAACGTTGGCAAGTCTACTCTT 239
Query 282 TTTAACGCCGTCGTTGAGAATGGAAAGGCTCAAGCTGCTAATTTTCCCTTTTGTACGATT 341
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 TTTAACGCCGTCGTTGAGAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACGATT 299
Query 342 GAGCCTAATGTGGGTATTGTTGCTGTTCCTGATTCGCGTCTTCAAGTGCTTTCTAAACTT 401
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 300 GAGCCTAATGTTGGTATTGTTGCTGTTCCTGATTCGCGTCTTCAAGTGCTTTCCAAGCTT 359
Query 402 AGTGGTTCTCAGAAAACGGTTCCTGCTTCTATTGAGTTTGTGGACATTGCTGGTCTTGTC 461
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 360 AGTGGTTCTCAGAAAACGGTTCCTGCATCCATTGAGTTCGTGGACATTGCTGGTCTTGTT 419
Query 462 AAGGGTGCTAGTCAAGGCGAAGGTTTAGGCAATAAGTTCTTATCTCACATCAGAGAAGTT 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGGGTGCTAGTCAAGGCGAAGGTTTAGGCAATAAGTTCTTATCTCACATCAGAGAAGTT 479
Query 522 GATTCCATCCTCCAGGTGGTGAGATGTTTTGAGGACAATGACATTATTCATGTGAATGGT 581
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 GATTCCATCCTCCAGGTGGTGCGATGTTTTGAGGACAATGACATTATTCATGTGAATGGC 539
Query 582 AAAGTTGATCCAAAGTCTGACATTGATGTCATCAATCTCGAGCTTATTTTCTGCGACTTA 641
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAAGTTGATCCCAAGTCTGACATTGATGTCATCAATCTCGAGCTTATTTTCTGCGACTTG 599
Query 642 GATCAGATTGGTAAAAGGATCGAGAGACTAAAGAAAGGGAAGGCTAAGGATTCACAATCC 701
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 GATCAGATTGGTAAAAGGATCGAGAGACTTAAGAAAGGGAAGGCTAAGGATTCACAATCC 659
Query 702 -AAAGTCAAGGAGGAAGCTGAAAAATCTGCTTTGGAAAGAATTCAGGAAGCTCTTCTGGA 760
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAAAAT-AAGGAGGAAGCTGAAAAATCTGCTTTGGAAAGAATTCAGGAAGCTCTTCTGGA 718
Query 761 AGGAAAACCTGCACGGTCAGTTGCATTGTCCGATCTCGAGATGGAAGTTGTAAAGCATCT 820
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 719 TGGAAAACCTGCACGTTCAGTTGCATTGTCCGACCTCGAGATGGAAGTTGTAAAGCATCT 778
Query 821 CTGCTTGCTTACAATGAAACCTATGATCTACGTGGCAAATGTTGCTGAAACTGATCTTGC 880
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 CTGCTTGCTTACAATGAAGCCTATGATCTATGTGGCAAATGTTGCTGAAACTGATCTTGC 838
Query 881 TGAGCCAGAGAAGAATGCTTACGTTGAAGAAGTGAAGGGTCTTTCTTCTGATTTGCAGTC 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGAGCCAGAGAAGAATGCTTACGTTGAAGAAGTGAAGGGTCTTTCTTCTGATTTGCAGTC 898
Query 941 CGGACATGTAGTTGTTTCAGCACAGGTTGAGTCAGAGCTAACCGAACTTCCTCTTGAAGA 1000
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 TGGACATGTGGTTGTTTCAGCACAGGTTGAGTCTGAGCTAACCGAACTTCCTCTTGAAGA 958
Query 1001 ACGCACAGAATATTTGAACTCTCTTGGTGTCAGTGAAAGTGGCCTCGGGAACCTTATCAG 1060
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 959 ACGCACAGAATATTTGAACTCTCTAGGTGTCAGTGAAAGTGGTCTCGGGAACCTTATCAG 1018
Query 1061 GGCAACATACAGCCTGCTAGGTTTGCAGACATATTTCACTTCTGGTGAAAAGGAAACAAG 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGCAACATACAGCCTGCTAGGTTTGCAGACATATTTCACTTCTGGTGAAAAGGAAACAAG 1078
Query 1121 AGCATGGACAATACACGCTGGCATGACTGCACCACAAGCTGCTGGCGTCATTCATTCTGA 1180
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGCATGGACAATACAAGCAGGCATGACTGCACCACAAGCTGCTGGCGTCATTCATTCTGA 1138
Query 1181 CTTTGAGAAAGGTTTTATTAGAGCTGAGACTGTTGCATATGAAGATTTTGTCACTGCTGG 1240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1139 CTTTGAGAAAGGTTTTATTAGAGCTGAGACTGTTGCGTATGAAGATTTTGTCACTGCTGG 1198
Query 1241 ATCTATAGCAGCAGCAAGGGAGAAAGGACTTTTGAGATCAGAGGGTAAAGAGTACATTGT 1300
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1199 ATCTCTAGCAGCAGCAAGGGAGAAAGGACTTCTGAGATCAGAGGGTAAAGAGTACATTGT 1258
Query 1301 TAAAGAAGGAGATGTGATGCTTTTCCGCTTCAACGTATAGCATAA---CCCTGAGATCTC 1357
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1259 TAAAGAAGGAGATGTGATGCTTTTCCGCTTCAACGTATAGCATAATAACCCCGAGATCTC 1318
Query 1358 AATCACTTCTTCACAGAACACGACAGGTTGTGTTTCTGCGCGGCTTTTA 1406
||||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 1319 AATCACTTCTTCACAGAACACCAAAGGTTGTGTTTCTGCACGGCTTTTA 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5