BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56080.1 Length=1305 Score E Sequences producing significant alignments: (Bits) Value Ahg474675 jgi|Araly1|474675|fgenesh2_kg.1__4629__AT1G56080.1 1639 0.0 > Ahg474675 jgi|Araly1|474675|fgenesh2_kg.1__4629__AT1G56080.1 Length=1124 Score = 1639 bits (887), Expect = 0.0 Identities = 1052/1127 (93%), Gaps = 30/1127 (3%) Strand=Plus/Plus Query 1 AAAAAGTGCGAATCTTCCAATAAAAACACGCCACGTAGTTTATTTAGGCAGCCGAAGATC 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 AAAAAGTGCGAATCTTCCAATAAAAACACGCCACGTAGTTTATTTGGGCAGCCGAAGATC 60 Query 61 CCGAG-GGCC-CTTT---GCGAT---GTCTCAAAGCGGCGGTGACTTCAACCTCTCCGAC 112 ||||| | || ||| || || |||||||||| |||||||||||| |||||||||| Sbjct 61 CCGAGAGACCTTTTTCGAGCAATGGAGTCTCAAAGCAGCGGTGACTTCAGCCTCTCCGAC 120 Query 113 GAGATTCTCGCCGTGATTCCCACCGACCCTTATGATCAACTCGACCTCGCCAGGAAGATC 172 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 GAGATTCTCGCCGTGATTCCCACCGACCCTTATGATCAACTCGATCTCGCCAGGAAGATC 180 Query 173 ACTTCCATGGCTATCGCTTCAAGGGTTTCGAATCTGGAATCTCAAGTCTCCGGCTTGAGA 232 ||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 181 ACTTCCATGGCCATAGCTTCGAGGGTTTCGAATCTGGAATCACAAGTCTCCGGCTTGAGA 240 Query 233 CAGAAGCTTCTTGAGAAGGATCGGCTTGTTCATGAACTTGAAGACAGAGTCTCTTCCTTT 292 ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| Sbjct 241 CAGAAGCTTCTTGAGAAAGATCGGCTTGTCCGTGAACTTGAAGACAGAGTCTCTTCCTTT 300 Query 293 GAAAGACTTTACCATGAAGCTGACTCGAGTTTGAAGAATGTTGTCGATGAAAATATGAAA 352 ||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||| Sbjct 301 GAAAGACTTTACCATGAGGCTGACTCTACTTTGAAGAATGTTGTTGATGAAAATATGAAA 360 Query 353 CTGACTCAAGAACGAGATTCACTGGCAATCACTGCGAAGAAACTCGGTCGTGATTATGCA 412 || ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 361 CTAACTCAAGAACGAGATTCACTGGCTATCACTGCGAAGAAACTCGGTCGTGATTTTGCA 420 Query 413 AAGTTGGAAGCATTCAAGAGACAATTGATGCAGTCATTGAATGATGATAATCCATCTCAA 472 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 421 AAGTTGGAAGCATTCAAGAGACAATTGATGCAGTCATTGAATGATGACAATCCATCTCAA 480 Query 473 ACTGAGACTGCTGATGTCAGAATGGTTCCTCGAGGCAAAGATGAGAATTC-AA------A 525 |||||||| |||||||||||| |||||||||||||||||||||||||||| || | Sbjct 481 ACTGAGACAGCTGATGTCAGAGTGGTTCCTCGAGGCAAAGATGAGAATTCGAATGGCTTA 540 Query 526 T--G-G-A----TCCTACTCAAACAATGAAGGTTTAAGTGAAGCGAGGCAAAGACAGTCT 577 | | | | |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 541 TCGGCGCACGGTTCCTACTCAAACAACCAAGGTTTAAGTGAAGCGAGGCAAAGACAGTCT 600 Query 578 ATGACTCCGCAGTTCTCTCCCGCG-TTTACACCAAGCGGAACACCAAAGATCTTATCTAC 636 ||||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 601 ATGACTCTGCAATTCTCTCCCG-GTTTTACACCAAGCGGAACACCAAAGATCTTATCTAC 659 Query 637 TGCTGCTTCTCCGAGAAGCTACTCTGCTGCTTCATCGCCAAAGCTATTCTCTGGAGCTGC 696 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TGGTGCTTCTCCGAGAAGCTACTCTGCTGCTTCATCGCCAAAGCTATTCTCTGGAGCTGC 719 Query 697 ATCTCCAACATCTTCACATTATGATATACGTATGTGGTCTTCAACTAGCCAGCAATCTTC 756 ||| |||||| |||||||||||||||||||||||||||||||| | |||||||| ||||| Sbjct 720 ATCCCCAACAACTTCACATTATGATATACGTATGTGGTCTTCATCAAGCCAGCAGTCTTC 779 Query 757 AGTAGCAAACTCTCCTCCACGCTCGCATTCTGTTTCAGCTCGGCATCCGCGGATTGATGG 816 |||||||||||||||||| || ||||||||| ||||||||| ||||||||||||||||| Sbjct 780 AGTAGCAAACTCTCCTCCTCGGTCGCATTCTACTTCAGCTCGCCATCCGCGGATTGATGG 839 Query 817 GAAAGAGTTCTTTAGACAAGCCAGGAGCCGTTTGTCTTACGAACAGTTCAGTGCATTCCT 876 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GAAAGAATTCTTTAGACAAGCCAGGAGCCGTTTGTCTTACGAACAGTTCAGTGCATTCCT 899 Query 877 GGCTAACATCAAGGAACTTAACGCCCGGAAGCAGGGCCGCGAGGAAACATTACAGAAAGC 936 |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| Sbjct 900 GGCTAACATCAAGGAACTAAACGCTCGGAAGCAGAGCCGCGAGGAAACATTACAGAAAGC 959 Query 937 AGAGGAAATATTTGGAAAGGAAAACAATGATCTTTACATATCCTTTAAGGGACTTCTCAC 996 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 960 AGAGGAAATATTTGGAAAGGAAAACAATGATCTATACATATCGTTTAAGGGACTTCTCAC 1019 Query 997 AAGTGGGCGTTGAAACAAAAACTCACCAACTTCTAAGCTTTCTTTTCATGACCAAT--T- 1053 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1020 AAGTGGGCGTTGAAACAAAAAC--ACCAACTTCTAAGCTTTCTTTTCATGACCAATAATT 1077 Query 1054 AGTCATGACTGATTTCAAATTTGTAAAACCTCTTTAACCATAGAAGA 1100 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 AGTCATGACTGATTTCAAATTTGTAAAACCTCTTTAACCATAGAAGA 1124 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48797333760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5