BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56170.1
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474686 jgi|Araly1|474686|fgenesh2_kg.1__4640__AT1G56170.2 1147 0.0
Ahg474760 jgi|Araly1|474760|fgenesh2_kg.1__4714__AT1G54830.1 235 3e-61
> Ahg474686 jgi|Araly1|474686|fgenesh2_kg.1__4640__AT1G56170.2
Length=961
Score = 1147 bits (621), Expect = 0.0
Identities = 717/761 (94%), Gaps = 16/761 (2%)
Strand=Plus/Plus
Query 35 GATAGCTTAGCAATGGAGCAGTCAGAAGAGGGTCAACAGCAACAGCAACAGGGAGTGATG 94
||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct 207 GATAGCTTAGCAATGGAGCCGTCAGAAGAGGGT------CAACAGCAACAGGGAATGATG 260
Query 95 GATTATGTACCTCCTCATGCTTATCAGAGTGGGCCAGTAAATGCAGCTTCCCATATGGCA 154
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 261 GATTATGTACCTCCTCATGCTTATCAGAGTGGGCCAGTAAATGCTGCGTCTCATATGGCA 320
Query 155 TTCCAACAAGCTCACCACTT---CCACCACCACCATCAGCAGCAACAACAGCAGCAGCTT 211
|||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct 321 TTCCAACAAGCTCACCACTTCCACCACCACCACCATCAGCAACAACAGCAGCAGCAGCTT 380
Query 212 CAGATGTTCTGGGCTAACCAAATGCAAGAGATCGAGCATACCACTGATTTCAAGAACCAC 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CAGATGTTCTGGGCTAACCAAATGCAAGAGATCGAGCATACCACTGATTTCAAGAACCAC 440
Query 272 ACCCTTCCCCTAGCCCGCATCAAGAAGATCATGAAAGCTGATGAAGATGTGAGGATGATC 331
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ACCCTTCCGCTGGCCCGCATCAAGAAGATCATGAAAGCTGATGAAGATGTGAGGATGATC 500
Query 332 TCTGCGGAGGCTCCTGTGATTTTTGCCAAGGCCTGTGAGATGTTCATTTTGGAGCTCACT 391
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TCTGCGGAGGCTCCTGTCATTTTTGCCAAGGCCTGTGAGATGTTCATTTTGGAGCTCACG 560
Query 392 CTACGTGCTTGGATCCACACCGAGGAGAACAAGAGGAGGACCTTGCAGAAGAACGACATC 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CTACGTGCTTGGATCCACACCGAGGAGAACAAGAGGAGGACCTTGCAGAAGAACGACATC 620
Query 452 GCCGCTGCCATTTCCAGGACCGACGTGTTTGATTTCCTTGTGGACATAATCCCGAGGGAC 511
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 621 GCCGCTGCCATTTCCAGGACCGACGTGTTTGATTTCCTCGTGGACATAATCCCGAGGGAC 680
Query 512 GAGCTGAAAGAAGAAGGTTTAGGCGTGACCAAAGGGACCATACCATCGGTGGTGGGTTCC 571
||| ||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||
Sbjct 681 GAGGTGAAAGAAGAAGGTTTAGGGGTGACGAAAGGGACCATACCATCCGCGGTGGGTTCT 740
Query 572 CCGCCATACTATTACTTGCAACAACAGGGGATGATGCAACACTGGCCCCAGGAGCAACAC 631
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCGCCATACTATTACATGCAGCAACAGGGGATGATGCAACACTGGCCCCAGGAGCAACAC 800
Query 632 CCTGATGAGTCTTAAAACTTTTCCCCTTTCGTTTGTTTGGTTGTATCGTAGTAAGGTAGC 691
| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 801 CATGATGACTCTTAAAACTTTTCTCCTTTCGTTTGTTTGGTTGTATCGTAGTAAGGTAGC 860
Query 692 TCTGCTCTGCTGGGAACCATTTCTATTGTGTTCTGTAATGACATGTTAGT-A-----T-A 744
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 861 TCTGCTCTGCTGGGAACCATTTCTATTGTGTTCTGTAATGACATGTTAGTCACCAGATGA 920
Query 745 TCCCCAGTCTATATCTATGGCAATGCAGTTTCTGTTCTCAT 785
|| ||||||||||||||| ||||| |||| ||||||||||
Sbjct 921 TCTACAGTCTATATCTATGTCAATGTAGTTCCTGTTCTCAT 961
> Ahg474760 jgi|Araly1|474760|fgenesh2_kg.1__4714__AT1G54830.1
Length=865
Score = 235 bits (127), Expect = 3e-61
Identities = 265/330 (80%), Gaps = 16/330 (5%)
Strand=Plus/Plus
Query 174 TCCACCACCACCATCAGCAGCAAC-AACAGCAGCAGCTTCAGAT-GTTCTGGGCTA-AC- 229
||||||| || || |||||||| | ||| || |||||||| || ||||||| | ||
Sbjct 305 TCCACCAGCAACAACAGCAGCAGCTAAC-TCAACAGCTTCA-ATCATTCTGGG--AGACT 360
Query 230 CAAATGC-AAGAGATCGAGCATACCACTGATTTCAAGAACCACACCCTTCCCCTAGCCCG 288
| ||| | ||||||| ||| | |||||||||||||||||||| | |||||| | || |
Sbjct 361 C-AATTCAAAGAGATTGAGAAAACCACTGATTTCAAGAACCATAGCCTTCCATTGGCGAG 419
Query 289 CATCAAGAAGATCATGAAAGCTGATGAAGATGTGAGGATGATCTCTGCGGAGGCTCCTGT 348
||||||||||||||||||||||||||||||||| | |||||||| || ||||| |||||
Sbjct 420 AATCAAGAAGATCATGAAAGCTGATGAAGATGTGCGTATGATCTCGGCCGAGGCGCCTGT 479
Query 349 -GATTTTTGCCAAGGCCTGTGAGATGTTCATTTTGGAGCTCAC-TCT-ACGTGCTTGGAT 405
| | || || | ||| ||||||||||| ||| ||||||| || | | | || ||||||
Sbjct 480 TG-TGTTCGCTAGGGCTTGTGAGATGTTTATTCTGGAGCTTACGT-TGAGGT-CTTGGAA 536
Query 406 CCACACCGAGGAGAACAAGAGGAGGACCTTGCAGAAGAACGACATCGCCGCTGCCATTTC 465
|||||| ||||||||||| |||||||| |||||||||||||| ||||| ||||| | |
Sbjct 537 CCACACTGAGGAGAACAAAAGGAGGACGTTGCAGAAGAACGATATCGCGGCTGCTGTGAC 596
Query 466 CAGGACCGACGTGTTTGATTTCCTTGTGGA 495
|| || || | |||||||||||||||||
Sbjct 597 TAGAACTGATATCTTTGATTTCCTTGTGGA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30002735679
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5