BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56180.1 Length=1526 Score E Sequences producing significant alignments: (Bits) Value Ahg474687 jgi|Araly1|474687|fgenesh2_kg.1__4641__AT1G56180.1 2150 0.0 > Ahg474687 jgi|Araly1|474687|fgenesh2_kg.1__4641__AT1G56180.1 Length=1365 Score = 2150 bits (1164), Expect = 0.0 Identities = 1311/1380 (95%), Gaps = 18/1380 (1%) Strand=Plus/Plus Query 1 GGCGAGAAGCACCTCTAATGGCTTTATCTCCGTCGTCTCCTCCATGTCTCAGATCTCTTT 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGCGAGAACCACCTCTAATGGCTTTATCTCCGTCGTCTCCTCCATGTCTCAGATCTCTTT 60 Query 61 CGCCTTCTTTTTCTCGCC-AAAT--TGGCTTCCTTGTTCCACGCGTACAGTCTCTAGTCT 117 || | |||||||||||| || | |||||||||||||||||||||||||||||||| || Sbjct 61 CG-C--CTTTTTCTCGCCGAATTGGTGGCTTCCTTGTTCCACGCGTACAGTCTCTAGCCT 117 Query 118 TTGGTAGCGTCCGGAAGCATGAGTTGCGGAGGCCGAGCGCACTCAGGGAATGGCGGGAGT 177 |||||||||| |||| ||||||| || ||||||||||||| ||||||||||||||||||| Sbjct 118 TTGGTAGCGTACGGAGGCATGAGCTGAGGAGGCCGAGCGCGCTCAGGGAATGGCGGGAGT 177 Query 178 ACGAAGATGCTGTGAAGAGAAAAGATCTCGCCGGGGCTCTTAGATTCCTCAAATCTATTG 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 178 ACGAAGATGCTGTGAGGAGAAAAGATCTCGCCGGGGCTCTTAGATTCCTCAAATCTATAG 237 Query 238 AAAATGATGAACAGCGTGATTCGGTTGAATCTATTGTCACGGCTAAGTTAAGCGGCTTGG 297 ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |||| Sbjct 238 AAAATGATGAAGAGCGTGATGCGGTTGAATCTATTGTCGCGGCTAAGTTAAGCGGTTTGG 297 Query 298 GAGCTCTTGAATTGGAGAGGGATTGGCAAGTTTTAGATGCGTGTTTGAATGCAGATGATA 357 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GAGGTCTTGGATTGGAGAGGGATTGGCAAGTTTTAGATGCGTGTTTGAATGCAGATGATA 357 Query 358 TGAGACTTGTTGGAAGTGCGTTTAGGTTTCTTAAGGAGAGAGGTCTTTTGGCCAACTTCG 417 ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 358 TGAGACTTGTTGGAAATGCATTTAGGTTTCTTAAGGAGAGAGGTCTATTGGCCAACTTCG 417 Query 418 GCAAATTCACCAGTATTGTTTTGGAAGGAACAAGAGAGGTAACACCTACTGTCCTGAAGT 477 ||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 418 GCAAATTCAGCAGTATTGTTTTGGAGGGAACAAGAGAGGTAACACCTACTGTTCTGAAGT 477 Query 478 CTGCAACTGGCTTGGAAGTGACTAAACTTTCACCGAAGAAGTGGGGACTTTCTGGTGGTT 537 ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| | Sbjct 478 CTGCAACTGGCTTGGAAGTGACTAAGCTTTCACCAAAGAAATGGGGACTTTCTGGTGGCT 537 Query 538 CTAGCATTGCTCTGGCTGCTTTGCTGGGTGGAGTCTCCTATCTTCTTTCACAGGAGATTG 597 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 538 CTAGCATTGCTCTGGCTGCTTTTCTGGGTGGAGTCTCCTATCTTCTTTCTCAGGAGATTG 597 Query 598 ATGTGCGGCCAAACCTTGCTGTCATTTTGGGTCTAGCTTATTTGGATTCCGTTTTTCTTG 657 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 598 ATGTGCGGCCAAACCTTGCTGTCATTTTGGGTCTAGCTTATATGGATTCTGTTTTTCTTG 657 Query 658 GTGGTACCTGCTTAGCCCAAGTATCATGCTACTGGCCTCCACATAAGCGTAGAATCGTAG 717 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 658 GCGGTACCTGTTTAGCCCAAGTATCATGCTACTGGCCTCCTCATAAGCGTAGAATCGTAG 717 Query 718 TTCACGAAGCTGGTCATCTTCTTGTTGCATACCTCATGGGCTGCCCAATCCGTGGTGTGA 777 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TTCACGAAGCGGGTCATCTTCTTGTTGCATACCTCATGGGCTGCCCAATCCGTGGTGTGA 777 Query 778 TATTGGATCCGGTTGTTGCCATGCAAATGGGGGTTCAAGGCCAGGCTGGAACCCAATTCT 837 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TATTGGATCCGATTGTTGCCATGCAAATGGGGGTTCAAGGCCAGGCTGGAACCCAATTCT 837 Query 838 GGGATCAAAAGATGGAGAGTGAGATTGCTGAGGGACGACTTAGCGGTAGCTCATTTGATA 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 GGGATCAAAAGATGGAGAGTGAGATTGCTGAGGGACGACTTAGCGGTAGCTCATTTGATA 897 Query 898 GGTATAGCATGGTACTATTTGCTGGTATTGCAGCTGAAGCGCTAGTTTATGGTGAGGCTG 957 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 898 GGTATAGCATGGTACTATTTGCTGGTATTGCAGCTGAAGCGCTAATTTATGGTGAGGCTG 957 Query 958 AGGGTGGAGAGAATGATGAAAATCTGTTCAGGAGCATCTCAGTCCTTCTGGAACCACCGT 1017 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 AGGGTGGGGAGAATGATGAAAATCTGTTCAGGAGCATCTCAGTCCTTCTGGAACCACCGT 1017 Query 1018 TATCCGTAGCTCAGATGTCGAATCAAGCCAGGTGGTCTGTTCTACAATCTTACAATCTAC 1077 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 TATCTGTGGCTCAGATGTCGAATCAAGCCAGGTGGTCTGTTCTACAATCTTACAATCTAC 1077 Query 1078 TCAAGTGGCACAAGGCAGCACATAGGGCCGCTGTTGAAGCTCTCCAAGTGGGAAGTCCTC 1137 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 TCAAGTGGCACAAGGCGGCACATAGGGCCGCTGTTGAAGCTCTCCAAGTGGGAAGTCCTC 1137 Query 1138 TTAGCATTGTGATTAGAAGGATTGAGGAAGCCATGTCTTCAAGCAAATGATTGAAGCACC 1197 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | Sbjct 1138 TTAGCATTGTGATTAGAAGGATTGAGGAAGCCATGTCTTCAAGCAAATGACTGAAGTATC 1197 Query 1198 AGCATTTTCTGTAATTTATTACTAATACGGACAGCCCATaaaaaaaaaaCTCATTTGGAA 1257 ||| |||||||||||||||||||||||||| || |||||||||| ||||||||||| Sbjct 1198 AGCGTTTTCTGTAATTTATTACTAATACGGGCAACCCATAAAAAC----CTCATTTGGAA 1253 Query 1258 TGCATGGAGACCGAAGCAGATAAGCTCTCGGTATCTCGGTATATAAACCACCTGACTGCA 1317 || |||||||| |||||||||| ||||||| || |||||||||||||||||||| Sbjct 1254 TGTATGGAGACGGAAGCAGATACGCTCTCG--AT------ATATAAACCACCTGACTGCA 1305 Query 1318 ACTGGAATGGCGAGAAGGGACTTGTATCTTTGGATCCATGTTCAAGTAAGTTAAGGTTTT 1377 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1306 ACTGGAATGGCGAGAAGGGACTTGTATCTTTGGATGCATGTTCAAGTAAGTTAAGGTTTT 1365 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57135367500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5