BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56190.1
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474689 jgi|Araly1|474689|fgenesh2_kg.1__4643__AT1G56190.1 2712 0.0
Ahg478641 jgi|Araly1|478641|fgenesh2_kg.3__1342__AT3G12780.1 1631 0.0
> Ahg474689 jgi|Araly1|474689|fgenesh2_kg.1__4643__AT1G56190.1
Length=1760
Score = 2712 bits (1468), Expect = 0.0
Identities = 1678/1775 (95%), Gaps = 31/1775 (2%)
Strand=Plus/Plus
Query 1 ATGATCTTTGTGAATGTGGGCAACGATTGTAAGCAGAGGGAAGGCG-AAGAATTATGATA 59
||||||||||||||||||| | | ||||||| ||||| |||||| | |||||||||||||
Sbjct 1 ATGATCTTTGTGAATGTGGCCCA-GATTGTATGCAGA-GGAAGGTGAAAGAATTATGATA 58
Query 60 ACCTCTCATCAACGATAAGACAAAATCCATAAACTAGTAATATCATCCAATCCTCTCA-- 117
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 59 ACCTCTCATCAACGATAAGACAAAATCCAGAAACTTGTAATATCATCCAATCCTCTCACT 118
Query 118 CTTCTTCCTTATTCCCTCACTTTCACTCTCACTATCTGTTGACTTCACATGGCTTCCACC 177
|||||||||||||| ||||||||| ||||| ||| | || ||||||||||||||||||||
Sbjct 119 CTTCTTCCTTATTCTCTCACTTTCCCTCTCTCTACCCGTCGACTTCACATGGCTTCCACC 178
Query 178 GCCGCAACTGCAGCTCTTTCGATCATCAAATCCACCGGTGGCGCCGCCGTTACACGCTCC 237
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 179 GCCGCAACTGCAGCTCTTTCGATCATCAAATCCACCGGTGGCGCCGCCTTTACCCGCTCC 238
Query 238 TCCCGCGCCTCCTT-TGGACACATTCCC-TCCACATCTGTCTCCGCACGTCGCCTTGGCT 295
|||||||||||||| | || || |||| ||||| ||||||||||||||||||| ||||
Sbjct 239 TCCCGCGCCTCCTTCT-TACCCA-TCCCATCCACCGCTGTCTCCGCACGTCGCCTCGGCT 296
Query 296 TCTCCGCCGTCGTTGACTCTCGTTTCTCGGTCCACGTGGCGTCCAAGGTCCACTCCGTGC 355
||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||
Sbjct 297 TCTCCGCCGTCGTTGACTCGCGTTTCTCCGTCCACGTGGCTTCCAAGGTCCAGTCCGTGC 356
Query 356 GCGGAAAGGGCGCCAGGGGAGTGATTACGATGGCGAAGAAGAGTGTTGGAGATCTGAATT 415
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 357 GCGGAAAGGGAACCAGGGGAGTGATTACGATGGCGAAGAAGAGTGTTGGAGATCTGACTT 416
Query 416 CTGTAGATTTGAAGGGGAAGAAGGTGTTTGTTAGAGCTGATCTCAATGTACCTCTCGATG 475
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTGCGGATTTGAAGGGTAAGAAGGTGTTTGTTAGAGCTGATCTCAATGTACCTCTCGATG 476
Query 476 ACAACCAGAATATCACTGACGACACTAGAATCAGAGCCGCCATTCCCACCATCAAGTTTT 535
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 477 ACAACCAGAATATCACTGACGACACTAGAATCAGAGCTGCCATTCCCACCATTAAGTTTT 536
Query 536 TGATTGAGAATGGTGCTAAGGTCATCCTCTCCACTCATTTGGGAAGGCCAAAGGGTGTCA 595
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 537 TGATTGAGAATGGTGCTAAGGTCATCCTCTCCACTCATTTGGGAAGGCCAAAAGGTGTCA 596
Query 596 CTCCAAAGTTCAGCTTGGCTCCTCTTGTTCCCAGATTATCAGAGCTCCTTGGTATTGAGG 655
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 597 CTCCAAAGTTCAGCTTGGCTCCTCTTGTTCCCAGATTGTCAGAGCTCCTTGGTATTGAGG 656
Query 656 TCGTGAAAGCTGATGATTGTATTGGTCCAGAAGTGGAAACCTTGGTGGCTTCCCTTCCTG 715
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 TCGTGAAAGCTGATGATTGTATTGGTCCAGAAGTGGAAAGCTTGGTGGCTTCCCTTCCTG 716
Query 716 AAGGTGGAGTTTTGCTTCTTGAGAACGTGAGGTTTTACAAGGAGGAAGAGAAGAACGAAC 775
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 717 AAGGTGGAGTTTTGCTTCTTGAGAACGTGAGGTTTTACAAGGAAGAAGAGAAGAACGAAC 776
Query 776 CTGATTTTGCTAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAACGATGCGTTCGGGA 835
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 777 CTGAGTTTGCAAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAACGATGCTTTCGGGA 836
Query 836 CTGCTCACAGAGCCCATGCTTCAACAGAGGGAGTCACTAAGTTCTTGAAGCCATCAGTTG 895
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTGCTCATAGAGCCCATGCTTCAACAGAGGGAGTCACTAAGTTCTTGAAGCCATCAGTTG 896
Query 896 CTGGTTTCCTTTTGCAAAAGGAGTTGGACTACCTTGTTGGTGCGGTTTCAAACCCAAAGA 955
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 897 CTGGTTTCCTTTTGCAAAAGGAGTTGGACTACCTTGTGGGTGCGGTTTCAAACCCAAAGA 956
Query 956 GACCATTTGCTGCCATTGTGGGAGGTTCCAAGGTCTCATCTAAGATTGGAGTTATCGAAT 1015
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 957 GACCATTTGCTGCCATTGTGGGAGGTTCAAAGGTCTCATCTAAGATTGGAGTTATCGAAT 1016
Query 1016 CGCTTCTTGAGAAATGTGACATCCTTCTGCTTGGTGGTGGAATGATCTTTACATTCTACA 1075
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTCTTCTTGAGAAATGTGACATTCTTCTGCTTGGTGGTGGAATGATCTTTACATTCTACA 1076
Query 1076 AGGCGCAAGGTCTTTCCGTTGGCTCCTCCCTTGTTGAAGAAGACAAGCTTGAATTGGCTA 1135
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1077 AGGCGCAAGGTCTTTCTGTTGGCTCTTCCCTTGTTGAAGAAGACAAGCTTGAATTGGCTA 1136
Query 1136 CAACACTCCTTGCCAAGGCTAAGGCCAGAGGAGTCTCTCTGTTGTTACCAACAGATGTTG 1195
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CATCACTCCTTGCTAAGGCTAAGGCCAGAGGAGTCTCTCTGTTGTTACCAACAGATGTTG 1196
Query 1196 TGATTGCTGACAAGTTCGCTCCTGATGCCAACAGCAAGATTGTGCCAGCATCAGCCATTC 1255
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1197 TGATTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTGCCAGCTTCAGCCATTC 1256
Query 1256 CTGATGGGTGGATGGGATTGGACATCGGTCCAGACTCGGTGAAAACATTCAACGAAGCTC 1315
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1257 CTGATGGGTGGATGGGATTGGACATCGGTCCAGACTCGGTGAAAACTTTCAACGAAGCTT 1316
Query 1316 TGGATACCACGCAGACAGTCATTTGGAATGGACCAATGGGAGTTTTCGAGTTTGAAAAGT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGGATACCACGCAGACAGTCATTTGGAATGGACCAATGGGAGTTTTCGAGTTTGAAAAGT 1376
Query 1376 TTGCAAAAGGAACTGAGGCGGTAGCGAATAAACTAGCAGAGCTAAGCAAAAAGGGAGTGA 1435
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1377 TTGCACAAGGAACTGAGGCGGTAGCGAATAAACTAGCAGAGCTAAGTAAAAAGGGAGTGA 1436
Query 1436 CAACGATAATAGGAGGAGGAGACTCGGTGGCAGCAGTGGAGAAAGTGGGAGTAGCAGGAG 1495
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1437 CAACGATAATAGGAGGAGGAGATTCGGTGGCAGCAGTGGAGAAAGTGGGAGTAGCAGGAG 1496
Query 1496 TCATGAGTCACATCTCCACAGGTGGTGGTGCCAGTTTGGAGCTCTTGGAAGGCAAAGTGC 1555
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1497 TCATGAGTCACATCTCCACAGGTGGTGGAGCCAGTTTGGAGCTCTTGGAAGGCAAAGTGC 1556
Query 1556 TTCCCGGTGTCGTCGCTCTTGATGAAGCAACGCCAGTCACTGTTTAACAACAT-CTCTTT 1614
|||||||||| ||||| ||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 1557 TTCCCGGTGTGGTCGCCCTTGATGAAGCAACGCCAGTCACGGTTTAACAAAATTCTCTTT 1616
Query 1615 ATTA------CACCTGAAGGGACCCCCCTAAATGAGTTTCTTCTTCTTATTCTGTTGTAA 1668
|||| |||||||||||||| | || ||||||||||||| ||||||||||||
Sbjct 1617 ATTATTATTACACCTGAAGGGACCTC---AA-TGAGTTTCTTCTT---ATTCTGTTGTAA 1669
Query 1669 ATCAAAGTCT-TTGTTGTACCATCAAATCCATAGAGAG-G-AGGGACTCTTTTTGTCTCA 1725
||| || | ||||||||||| ||| ||||||||||| | || ||||||||||||||||
Sbjct 1670 ATCT--GT-TATTGTTGTACCACCAA-TCCATAGAGAGAGGAGAGACTCTTTTTGTCTCA 1725
Query 1726 AATAAAATCAAA-TACAGTGACATTCGTTATTTTG 1759
|||||||||||| | || |||| ||||||||||||
Sbjct 1726 AATAAAATCAAAATCCAATGACTTTCGTTATTTTG 1760
> Ahg478641 jgi|Araly1|478641|fgenesh2_kg.3__1342__AT3G12780.1
Length=1644
Score = 1631 bits (883), Expect = 0.0
Identities = 1285/1475 (87%), Gaps = 43/1475 (3%)
Strand=Plus/Plus
Query 152 TCTGTTGACTTCACATGGCTTCCA-CCGCCGCAACTGCAG-CTCTTTCGA-TCATCAAAT 208
||| |||| | |||||||||| || | ||||||| | | | || |||| | || | || |
Sbjct 55 TCT-TTGA-TCCACATGGCTT-CAGCTGCCGCAAGTCCCGCCT-TTTC-ACTCCTTAAGT 109
Query 209 CCACCGGTGGCGCCGCCGT--TAC-AC-G--CTC-CTCCCGCGCCT-CCTTTGGA-CACA 259
|||||||||||| || | | | | | | ||| | | ||||||| ||||| | || |
Sbjct 110 CCACCGGTGGCGTCG-CTTCCTCCGCCGGAACTCGCGCACGCGCCTCCCTTT-TACCA-A 166
Query 260 TTCCCTCCACATCTGTCTCCGCACGTCGC-CTTGGCTTCTCCGCC-GTCGTTGA--CTC- 314
||||||| || ||||| ||||| |||| | ||||||||||||||| || | || | |
Sbjct 167 TTCCCTCTACCTCTGTTTCCGCGCGTC-CTCTTGGCTTCTCCGCCACTC-TCGATTCCCG 224
Query 315 TCGTTTCTCGGTCCACGTGGCGTCCAAGGTCCACTCCGTGCGCGGAAAGGG-CGCCAGGG 373
||||||||| ||||||| || ||||| || | || ||| |||| ||||| | ||| |
Sbjct 225 TCGTTTCTCTCTCCACGTTGCTTCCAAAGTTGAATCGGTGTGCGGGAAGGGAAG-CAGAG 283
Query 374 GAGTGATTACGATGGCGAAGAAGAGTGTTGGAGATCTGAATTCTG-TAGATTTGAAGGGG 432
||||| || | |||||||||||||| || |||||||||| || | | ||||||||||||
Sbjct 284 GAGTGGTTTCTATGGCGAAGAAGAGCGTCGGAGATCTGACCTCAGCT-GATTTGAAGGGG 342
Query 433 AAGAAGGTGTTT-GTTAGAGCTGATCTCAATGTACCTCTCGATGACAACCAGAATATCAC 491
|||||||| ||| || ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 343 AAGAAGGT-TTTCGTGAGAGCTGATCTCAATGTACCTCTCGATGATAACCAGACTATCAC 401
Query 492 TGACGACACTAGAATCAGAGCCGCCATTCCCACCATCAAGTTTTTGATTGAGAATGGTGC 551
|||||| || |||||| | ||||| ||||| || ||||||| |||||| || ||||||||
Sbjct 402 TGACGATACCAGAATCCGTGCCGCTATTCCAACGATCAAGTATTTGATCGACAATGGTGC 461
Query 552 TAAGGTCATCCTCTCCACTCATTTGGGAAGGCCAAAGGGTGTCACTCCAAAGTTCAGCTT 611
||| || ||||||||||||||| |||||||||||||||| ||||| |||||||| || ||
Sbjct 462 TAAAGTTATCCTCTCCACTCATCTGGGAAGGCCAAAGGGAGTCACACCAAAGTTTAGTTT 521
Query 612 GGCTCCTCTTGTTCCC-AGATTATCAGAGCTCCTTGGTATTGAGGTCGTGAAAGCTGATG 670
||||||||||| |||| || | || ||||| ||||||||||||||| |||||||||||
Sbjct 522 GGCTCCTCTTG-TCCCTAGGCTCTCCGAGCTTCTTGGTATTGAGGTCACGAAAGCTGATG 580
Query 671 ATTGTATTGGTCCAGAAGTGGAAACCTTGGTGGCTTCCCTTCCTGAAGGTGGAGTTTTGC 730
||||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 581 ATTGTATCGGTCCAGAAGTAGAAAGCTTGGTGGCTTCTCTTCCTGAAGGTGGAGTTTTGC 640
Query 731 TTCTTGAGAACGTGAGGTTTTACAAGGAGGAAGAGAAGAACGAACCTGATTTTGCTAAGA 790
|||||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 641 TTCTTGAGAATGTCAGGTTTTACAAGGAAGAAGAGAAGAACGATCCTGAGTTTGCTAAGA 700
Query 791 AGCTTGCTTCTCTAGCTGACCTTTATGTCAACGATGCGTTCGGGACTGCTCACAGAGCCC 850
||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 701 AGCTTGCTTCTCTAGCTGACCTTTATGTCAATGATGCTTTCGGAACTGCTCACAGAGCTC 760
Query 851 ATGCTTCAACAGAGGGAGTCACTAAGTTCTTGAAGCCATCAGTTGCTGGTTTCCTTTTGC 910
||||||| || || ||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 761 ATGCTTCTACCGAAGGAGTCACTAAGTTCTTGAAGCCTTCAGTTGCTGGTTTCCTTCTGC 820
Query 911 AAAAGGAGTTGGACTACCTTGTTGGTGCGGTTTCAAACCCAAAGAGACCATTTGCTGCCA 970
|||||||| ||||||| |||||||| || |||||||||||||||||||||||||| ||||
Sbjct 821 AAAAGGAGCTGGACTATCTTGTTGGCGCTGTTTCAAACCCAAAGAGACCATTTGCAGCCA 880
Query 971 TTGTGGGAGGTTCCAAGGTCTCATCTAAGATTGGAGTTATCGAATCGCTTCTTGAGAAAT 1030
| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 881 TAGTGGGTGGTTCCAAGGTCTCATCAAAGATTGGAGTTATTGAATCGCTTCTGGAGAAAT 940
Query 1031 GTGACATCCTTCTGCTTGGTGGTGGAATGATCTTTACATTCTACAAGGCGCAAGGTCTTT 1090
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 941 GTGATATCCTTCTTCTTGGTGGTGGAATGATCTTTACATTCTACAAGGCACAAGGTCTTT 1000
Query 1091 CCGTTGGCTCCTCCCTTGTTGAAGAAGACAAGCTTGAATTGGCTACA-ACACTCCTTGCC 1149
| ||||| || |||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 1001 CAGTTGGTTCGTCCCTTGTTGAAGAAGACAAACTTGAATTGGCTACAGA-ACTCCTTGCC 1059
Query 1150 AAGGCTAAGGCCAGAGGAGTCTCTCTGTTGTTACCAACAGATGTTGTGATTGCTGACAAG 1209
|| |||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 1060 AAAGCTAAGGCCAAAGGAGTCTCTCTTTTGTTGCCAACAGATGTTGTGGTTGCTGACAAG 1119
Query 1210 TTCGCTCCTGATGCCAACAGCAAGATTGTGCCAGCATCAGCCATTCCTGATGGGTGGATG 1269
|| ||||||||||||||||||||||||||||| ||||||| |||| || || ||||||
Sbjct 1120 TTTGCTCCTGATGCCAACAGCAAGATTGTGCCTGCATCAGGCATTGAGGACGGATGGATG 1179
Query 1270 GGATTGGACATCGGTCCAGACTCGGTGAAAACATTCAACGAAGCTCTGGATACCACGCAG 1329
||||||||||||||||||||||| | ||||| ||||||||||||||||| || || ||
Sbjct 1180 GGATTGGACATCGGTCCAGACTCTATCAAAACTTTCAACGAAGCTCTGGACACAACACAA 1239
Query 1330 ACAGTCATTTGGAATGGACCAATGGGAGTTTTCGAGTTTGAAAAGTTTGCAAAAGGAACT 1389
||||| |||||||||||||| ||||||||||||||| | ||||||||||| ||||||
Sbjct 1240 ACAGTTATTTGGAATGGACCTATGGGAGTTTTCGAGATGGAAAAGTTTGCGGCAGGAACA 1299
Query 1390 GAGGCGGTAGCGAATAAACTAGCAGAGCTAAGCA-AAAAGGGAGTGACAACGATAATAGG 1448
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 1300 GAGGCGGTAGCGAATAAACTAGCAGAGCTCAGTGGAAAAGG-AGTGACAACGATAATAGG 1358
Query 1449 AGGAGGAGACTCGGTGGCAGCAGTGGAGAAAGTGGGAGTAGCAGGAGTCATGAGTCACAT 1508
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1359 AGGAGGAGACTCGGTGGCTGCAGTGGAGAAAGTAGGAGTAGCAGGAGTCATGAGTCACAT 1418
Query 1509 CTCCACAGGTGGTGGTGCCAGTTTGGAGCTCTTGGAAGGCAAAGTGCTTCCCGGTGTCG- 1567
|||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||| |
Sbjct 1419 CTCCACTGGTGGTGGAGCCAGCTTGGAGCTGTTGGAAGGCAAAGTACTTCCCGGTGT-GA 1477
Query 1568 TCGCTCTTGATGAAGCAA-CGCCAGTCACTGTTTA 1601
|||| ||||||||||| | | |||||||| |||||
Sbjct 1478 TCGCCCTTGATGAAGCGATC-CCAGTCACCGTTTA 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67457823895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5