BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56200.1 Length=715 Score E Sequences producing significant alignments: (Bits) Value Ahg474690 jgi|Araly1|474690|fgenesh2_kg.1__4644__AT1G56200.1 804 0.0 > Ahg474690 jgi|Araly1|474690|fgenesh2_kg.1__4644__AT1G56200.1 Length=571 Score = 804 bits (435), Expect = 0.0 Identities = 526/567 (93%), Gaps = 17/567 (3%) Strand=Plus/Plus Query 50 GCTTTAGCCATGGCTATGGCGGCGTCTATTATCCAATCTTCTCCGCTCTCCTTCAATAGC 109 ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1 GCTTTTGCCATGGCTATGGCGGCGTCTATCATCCAATCTTCTCCGCTCTCATTCAATAGT 60 Query 110 AACAACGCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCAAA-AGCCAAAA 168 | ||||| ||||| |||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 61 AGCAACGAAAAGCTGCGGATTCATAGTTCAGGATCGCTCGGTGGAATCAAATTG-CAAAA 119 Query 169 TAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAGTAGAAGGAAATC 228 |||||| |||||| | | | ||||| |||||||||||||||||||||||| |||| Sbjct 120 TAGAGTGTCTCCA-T---T---G--GGATTGAGCTCAGGCCTTGGAAGTAGAAGGCAATC 170 Query 229 TCTTTTGATATGTCACTCAGCCATTAACGCGAAATGCAGTGAAGGACAAACACAGACCGT 288 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 171 TCTTTTGATATGTCACTCAGCTATTAACGCGAAATGCAGTGAAGGACAAACACAGACCGT 230 Query 289 TACTCGGGAGTCACCGACTATAACACAGGCTCCTGTACACTCTAAGGAGAAATCACCAAG 348 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 231 TACTCGGGAGTCACCGACAATAACACAGGCTCCTGTACACTCTAAGGAGAAATCACCAAG 290 Query 349 CCTAGACGATGGAGGAGACGGGTTCCCACCGCGAGATGATGGAGATGGTGGTGGAGGAGG 408 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 291 CCTAGACGATGGAGGAGACGGGTTCCCACCACGAGATGATGGAGATGGAGGTGGTGGAGG 350 Query 409 AGGGGGTGGAGGCAACTGGTCGGGTGGGTTCTTCTTCTTTGGTTTTCTGGCCTTCTTGGG 468 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 351 AGGGGGTGGAGGCAACTGGTCAGGTGGGTTCTTCTTCTTTGGTTTTCTGGCCTTCTTGGG 410 Query 469 TCTATTGAAGGATAAAGAGGGCGAGGAAGATTACCGAGGGAGCAGAAGGCGATA-ATAAT 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 411 TCTATTGAAGGATAAAGAGGGCGAGGAAGATTACCGAGGGAGCAGAAGGCGATAGAAAAT 470 Query 528 ATGGGC-CACTCTTGGTTA-TCTTATTACAGCTACAGGACTCATTTTGTATCTGTTTCGT 585 ||| | || | ||||| | |||||||||||||||||| ||||||||||||||||||||| Sbjct 471 ATGA-CACA-T-TTGGTCAATCTTATTACAGCTACAGGTCTCATTTTGTATCTGTTTCGT 527 Query 586 TGAGTGGGGGATGATATGCCTTGTATT 612 ||||||||||||||||||| ||||||| Sbjct 528 TGAGTGGGGGATGATATGCGTTGTATT 554 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26304812730 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5